Array 1 43-332 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXP01000001.1 Listeria monocytogenes strain 18ZQLM02 NODE_1_length_574792_cov_76.493322, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 43 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 108 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 174 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 239 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 303 29 93.1 0 .......................A....C | C [326] ========== ====== ====== ====== ============================= ===================================== ================== 5 29 98.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : ATGTAAATAGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTAG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6487-9563 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXP01000022.1 Listeria monocytogenes strain 18ZQLM02 NODE_22_length_14851_cov_64.220524, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6487 36 100.0 30 .................................... AGAATACTTTTTAGTTCATTCTAAAACGCC 6553 36 100.0 30 .................................... TGAAGAGAGCAAAGAACGTGTGAAAACGTG 6619 36 100.0 30 .................................... AAGCGAAAGCATTATTTGTAGAGGTCCATG 6685 36 100.0 30 .................................... GAATTCTATACGTTTAGAACTTTCCCGCCA 6751 36 100.0 30 .................................... GTAACACGAAAGGACTTGTCTACAGCTCTG 6817 36 100.0 30 .................................... TAATGACAAGTTATTATTATAGTAGAAGTT 6883 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 6949 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7015 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7081 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7147 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7213 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7279 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7345 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7411 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7477 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7543 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7609 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7675 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7742 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7808 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 7874 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 7940 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 8006 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 8072 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 8138 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 8204 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 8270 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 8336 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 8402 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 8468 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 8534 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 8600 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 8666 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 8732 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 8798 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 8864 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 8930 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 8996 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 9062 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 9128 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 9194 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 9260 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 9327 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 9393 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 9459 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 9525 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [9550,9556,9559] ========== ====== ====== ====== ==================================== =============================== ================== 47 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 26-505 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXP01000034.1 Listeria monocytogenes strain 18ZQLM02 NODE_35_length_548_cov_4.263658, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 26 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 90 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 155 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 220 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 285 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 348 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 411 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 477 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 100.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CGATTATACTTTTTAGTCAAATTACG # Right flank : AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTAGTTTTAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 40104-40657 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXP01000019.1 Listeria monocytogenes strain 18ZQLM02 NODE_19_length_40678_cov_60.651550, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 40104 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 40170 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 40235 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 40299 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 40365 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [40371] 40433 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 40498 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 40563 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 40629 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 100.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTAACAAGTAGTGTTATACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //