Array 1 3488-444 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGD01000028.1 Ureibacillus terrenus strain ATCC BAA-384 NODE_28_length_16021_cov_311.772682, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 3487 30 100.0 36 .............................. ACACGTAACTAAAAATTGCGAAAAGCAAACCCAAAA 3421 30 100.0 36 .............................. CGCCTCCTTTGCCCAATAAAGATAATTGCTGACTTA 3355 30 100.0 37 .............................. CCGGAAAAACTATCACTTGAAATGCCAGGAATCCTCA 3288 30 100.0 38 .............................. TTGATTTGTGGTTTCTTTGCCATACTCACATCTCCTCC 3220 30 100.0 37 .............................. CTCAAAAAATCGAAAGTCATTAAACCGCAAAGGCTGG 3153 30 100.0 39 .............................. ACGCCTAAACTCATAAAGTTTGAGCGCCTCCTCATACTC 3084 30 100.0 37 .............................. AAGACCAAGAAAATCATTTAATATTATTACTTGGCCA 3017 30 100.0 36 .............................. ATGTCTTCGGGTGCAGGTTTCCAATCGGTGGCTTTG 2951 30 100.0 38 .............................. TTGTATTGCAATTGCAAAGATATGTCATATGGGCTAAA 2883 30 100.0 38 .............................. TCTATAAATGAATAAACAAGTTTTACATTTTCCGTGAC 2815 30 100.0 36 .............................. GAAAGTACCGGAACACCGGACGCAACACACGGGGAC 2749 30 100.0 38 .............................. CTTCAATTTCTCTAATAATCTCGTATTCTTCCCAACCA 2681 30 100.0 35 .............................. TTCGATGAGCCATTCAACATCTTCTGGTCTGACAC 2616 30 100.0 37 .............................. TTTCCATCCTGTAGATAGTCCGATCACTTCTCGAGGA 2549 30 100.0 41 .............................. TTGACTAAAATAATATGTTTGATCATTTCATTCGTATCTTC 2478 30 100.0 39 .............................. TTTTGTGTTAGTGAGGGAGTGTTCCTCCATCTTTTTTAC 2409 30 100.0 38 .............................. TGCGCTCGTTGATGGTGAATTAGAATTGGATGAAATAT 2341 30 96.7 39 ...............G.............. AAATATCAGCCAATTTTCCAGCAAATTCATCCAACTCCC 2272 30 100.0 35 .............................. TCGACAACAGACAGAACGGAAAGCTGTGTCTGTTT 2207 30 100.0 38 .............................. TCAGAAAAAGTGGAGGTGATAGAGTGGGAAAGTCATTT 2139 30 100.0 35 .............................. ATAGATTGATAAATTCCAGTGTGGAGGGAACGGAA 2074 30 100.0 35 .............................. AGTTGTTGAAGCCTCTTTATCCAAAATTCGTACTG 2009 30 100.0 36 .............................. ATAATCTCCATTAGCGATGTAATCGCCTCAGCTGGA 1943 30 100.0 38 .............................. AAACAATGATTTCGAAATCTCTTCGATGATGATTGGCT 1875 30 100.0 38 .............................. ATAAATGCACCACTAATTGTGCCACCAGACAAAGTGCC 1807 30 100.0 36 .............................. ATACAAGCGGTGATAGAACTTTCTTTGTGGATACAA 1741 30 100.0 38 .............................. TGGACCATTTTCTGCCGCTGTCGCTTCCCTCCCTGTCG 1673 30 100.0 36 .............................. ACAAACCTAGTAGTTTGTTTTGTATCGTTGAAGTAG 1607 30 100.0 36 .............................. TCAAACATTATTTGAGTTTTAATAGAGTCTGCTTCA 1541 30 100.0 41 .............................. GCTCATTGTGCATGTCGCGGTCGCGATTTTTTGTAACTTCA 1470 30 100.0 38 .............................. TGGAACAGGTCCTCGTTGGCATGGTCCGGCATTGATTC 1402 30 100.0 37 .............................. AACAATTTATTCCCAATAATCGCAAGATTGCCTGTAT 1335 30 100.0 38 .............................. CAGTAACATCGACAACATTTTCTATGATGATTAAACGT 1267 30 100.0 36 .............................. TAAAAATATCCTCGTTCGTCAGCCCACTTTAAGTAG 1201 30 100.0 36 .............................. TTGAAATATGAAAGAGTGGAAAAAGTAGACAATGTG 1135 30 100.0 36 .............................. ATAATTTTTGTTTGGTCGAACAAGCCAGCCGCGGAC 1069 30 100.0 35 .............................. CGATAAGTTTGAATGTGTCTGAAATGATACGCCAG 1004 30 96.7 38 .............................T TGCGGTTACCAACCCGTTTTGGATATGGCAAATCTTTC 936 30 96.7 37 .............................T ACCAGGAGGGAACAGCATGGGCGAAGGTTACAGAACA 869 30 96.7 37 .............................T TTTAGTGACACAGCATAATAAAACAAACCGAAAACTT 802 30 96.7 36 .............................T AGTTTCGTGGCGGGATACAGTTTCGTTTAGGTTTGA 736 30 96.7 37 .............................T CTCCAACAATCTGCCCGTCAGCATTGCGGACAACTGA 669 30 96.7 35 .............................T CTAGCTTTTGAAAATGCTTAAATGAGCAGCTTCGA 604 30 96.7 34 .............................T CCGGATCGTCTAGATCGACAAGCGGAGTACCTAG 540 30 96.7 35 .............................T AGAGTCTTTGCCTGTACCGTTTTCCGCCAATCAAT 475 30 86.7 0 ...................T....G.T..T | TT [452] ========== ====== ====== ====== ============================== ========================================= ================== 46 30 99.1 37 GTTTTGATCTTACCTATGAGGGATTGAAAC # Left flank : ATTTTAGTGATTACTATGATGGTAAAAAAGCTGCAACTGATACATTAGGACCTGTGCCAATTTATTTTTATACCGTTGAAGTTGAAGCACCTGAAATCGAGATATTGTTTATTGTAAGAGGTGGAAAAAACAGTAGATATCCGAAAGAAATAATCGGAAAAATCGTCGCCGATTGGACAAAAAGTGCTTTAGTAGAGTTAGGACTAGGAGCAAAAACTTCATCTGGATACGGTTTTTTTAATGAAGTAAAAGATGTCACAGAAAAAGTAATGACTAAACAAAAATGATAAGAAGAATTGCAATTAAAATAAAGGATTAAATAATTTGTCGTCGATCGGTCTCACGACAGCAACCCCGAGGGATCGACGACAAATTATTTTTGTATAATTTATAGAAATCCCAATAAAATCAATGAATTTCATTATTTTCACGAAAATTTCAAATTGACTATTTTTTAATAAAAAGTTACTATATAGCTAACAAATGTTGATTTTATTAGG # Right flank : TTAATTTTTGTAGTGTTTGGCAATTAAGGTTATGCATAAATTTTTGCATATTTGACGCTTTACATGGAGTGGCGGGCATGATAGGCTACTTTGCCTTGCAAAGTCCAAATATAATTATGGCTTGCTCCCTTTGCAAGAAATCATGCCCGCAGAGGCTCCATGTCAAGCGATTATAGATACGAATAATTATTCAAGATATCGAATAAATTTAATTGCCATTTCATGCATTTTTTAATTGCCAAAAACAGAGTAAATCCAGCTTTGCCCGGCCATACATGATTCGTTTCATCAGCTTCAATCGGTGAACATGGCCTTCCACAACTCCGTTACTGTAGGAAGTACTAAATGCCAGCTTAATCGACTGTAAATCCCTACGGAGTCGAAGTGCACAATCATATAAATGATTGTTTGGAGAAGACAATTGTTTTTCCAACCATTTGAAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 15794-12230 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGD01000028.1 Ureibacillus terrenus strain ATCC BAA-384 NODE_28_length_16021_cov_311.772682, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 15793 30 100.0 36 .............................. GAAAACGAGTTCCCAAAGACATGGGCACGCGCTTTA 15727 30 100.0 36 .............................. CGAGGGTACTATCTACAATCACCTTCTGATAAATTC 15661 30 100.0 38 .............................. CTTGCTTTAATGATGCAAGAAAGCGGAGGAAGAGGGGC 15593 30 100.0 35 .............................. CCGAATTCGACTTCGCGTCCGTTCCAGCCGCCTAC 15528 30 100.0 37 .............................. CCAATTTCAAGGCATCCACTATCATACTAAAAAATCA 15461 30 100.0 36 .............................. ATCGAATACACGCCGCATGAAATCGGCTCATATGAT 15395 30 100.0 35 .............................. AAAAAGGCTTATAAATACCTTGAATTTGCGATTGA 15330 30 100.0 38 .............................. CTCGCACAATTAACACGGCATCGTCATATGTCATTCAG 15262 30 100.0 39 .............................. AAGAATAGAACATATGTTTTTTTAATAATTGGTTTCTTG 15193 30 100.0 35 .............................. TTTTAGATGGAAAAACATTATATGTCCCATTGGAT 15128 30 100.0 38 .............................. AAGGACGGTTAGGAGAAATAAAATTCAACTTTAATAAC 15060 30 100.0 36 .............................. TGGCTGGGGTAGAGGACAGCTACAAACTGAACTATT 14994 30 100.0 38 .............................. TAATGCTGTAATACTTGCCGTTTTTGCGAACGTCACCA 14926 30 100.0 36 .............................. ATGATATAGTGATTGATTACCGAATCGCCGATGCGT 14860 30 100.0 34 .............................. ATTCAGGTGGAACAGGTTTAAATAATCCGTTCCT 14796 30 100.0 38 .............................. TTTGACGCCCATTCAGCGATTTTAGAAACAACATCAGC 14728 30 100.0 36 .............................. TTTTTTGGAGTGATGAACATGAAAAAAACGGAAGAA 14662 30 100.0 38 .............................. ACTAAAAAAATTGAGCAACGTAAAGCTGCTTTAAATGA 14594 30 100.0 36 .............................. ATGTCCTTTTTGGACATTCCCTGGGACTGCAATTTC 14528 30 100.0 37 .............................. TTATACATCATATAGTGTGTATTGTTAACATACTTTT 14461 30 100.0 38 .............................. TATAACAATGATGCTTGTTTGTGTTGTCGTAGAAGCTG 14393 30 100.0 37 .............................. TCTCGGATGTGGACGCAAAAGGCTGTGTCAAAATTCC 14326 30 100.0 35 .............................. TTGAAACGGTGCTTGGTGACGGCCCGCTTGTGATT 14261 30 100.0 36 .............................. ATTCTTGCGCAGGCAGAAGGCGCGCGTGACATCGCT 14195 30 100.0 38 .............................. CCACCTTGAACTGAATTAATGAAACCACCAAAGTTAGA 14127 30 100.0 36 .............................. CAACAGCTCCTTTTCGAGAATATTTTTCGATTATAT 14061 30 100.0 36 .............................. ACCGATTGTATAATGTAGTTTACTAAAAATAATAAA 13995 30 100.0 36 .............................. CGACAAAGAAGTCGTGCGTGCAATCGGTAACGATTA 13929 30 100.0 37 .............................. CAAGCCTACTGATACGGAAATATACAATCCGCATCCG 13862 30 100.0 35 .............................. TCGCCCTGCCGCCGTTTGACCATGCACCGATTGGT 13797 30 100.0 38 .............................. TTCAATACATCACAGAAAGAATAAACAAGTTTGACATT 13729 30 100.0 35 .............................. CAGGGAGAAATAACCCAAAAGGTAAGCCAATCAAC 13664 30 100.0 36 .............................. AGAATCCATTCACCTCCGCCACCGTATGTAAAGTTT 13598 30 100.0 38 .............................. GCTGTTATCGGCGCTGCTGTTGGTGGCGATGAAACAGC 13530 30 100.0 39 .............................. GCGCTCGTAGCCGCTGCATTTGCTTCGTTCGCCGCATTT 13461 30 100.0 37 .............................. TGAAACACATGAAATCGGGATGCTTTCGTGGGAAGGT 13394 30 100.0 35 .............................. CTGAAGATATGCAGCAGCAAGTAAAAAACGACTAA 13329 30 100.0 37 .............................. AAAGTAGTGCATAAAGATAATTCTTTTTTCATTTTCA 13262 30 100.0 39 .............................. GATGAATGGAAACAAGAAGCAATTAAATTTTTTACAAAC 13193 30 100.0 37 .............................. ATAAATTTTTTGTTTTGTCTTCCTCCGCTAGTAAGGA 13126 30 100.0 38 .............................. TGCAGCTGCTTCTCCAATTCCGCAGCCGCAAGCTCTGC 13058 30 100.0 37 .............................. CGGATGTGCTAGTGCACATCGTCAAGCGCAAGTGTGC 12991 30 100.0 35 .............................. AGTATTGGAGCAATAGCAGCGCCAATCGGAATAGC 12926 30 100.0 37 .............................. CGGAATACAAAGCAGGCGCGCGCTGACATCCAAACCC 12859 30 100.0 36 .............................. TCTAGCGTCTCACTTTCCATTGTTTCTACATTAGCC 12793 30 100.0 37 .............................. TCAGACTTGGAAGAAATAAACGCCGAATTCAACTCTC 12726 30 100.0 37 .............................. TCAGGTAGTGAAAGACCCGACAGGTAGCGGATACATT 12659 30 100.0 37 .............................. TTGGCATTTCGGTCTTAGGTCGTCGGATTCGGGTTTG 12592 30 100.0 36 .............................. TCATGTTCGTATTGAACGTTTTCAAAATGTTTGCGG 12526 30 100.0 39 .............................. GTTCCTTCCAGTTTTTCAGTTCAGCCGGTACAGGTTTGA 12457 30 100.0 37 .............................. CAAGATTGCCTGTGTGGCTTTCGCCTTCACAGCCTCC 12390 30 100.0 35 .............................. AGCGATAACTTTACGAAAATTGATACAGAAATTAA 12325 30 100.0 36 .............................. ACGGTTGTTGTACTTGATACGCCAAACAATCCGGTG 12259 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ======================================= ================== 54 30 99.9 37 GTTTTGATCTTACCTATGAGGGATTGAAAT # Left flank : GATGGACAACTCTACGAGGATTGGAAAAATTGTCCATGCAGGCGATGCTTACTTTCGCTGCCATGAACTTAAAGAAAATGGCAAACTGGACATGGAAAAGACCATGTCCAGCCTAAATAAGAGAAGAATCTTAGAAAATGATGAGCAAAAAAAGACAAACCCCAACTCAAATGAAGCATTTGAGTTGGGGTTTGTCGACAGTCTGAGAGCTACTTAAAACAGTAGCT # Right flank : CGAGCAAATTTTTTCCTCACTTTTTTTGTAAAATTTCAATTTTCCCCATATTTTTGTTGAATTTTTACAAAATTATTAAATTAATGAAGGATTCCGAAAAAATGTGTCAAAGTTATTATATAATTAGCAATAAAGTGGAAATTGTGTAAGAATTTTGGAGGAATTGTTGTAATGTATCATACTGTAGTTATTACGTGCGGAACGTCTTTTAATAATTCAAGTAATTTTTTTTGTTTTAATAATTTTGATAAATTTAAGGAAAAATCACTTAATTTATTTGATACAGAGATATCAGAAGAAACTGAAAATGTTATCAATAAGTGGCTTCATTTATGTATAAGGAAACATAAGCAAAACAAACTAGAGCCAAATCAGGTTAGCGCAGAATATTCAACAATGTATTCTTTAAAAAAATTAGGGAAGCTACATAAAAAACCAACCGTTGTTCTTATTGTGACGAACAGTATTGGCGGTTATATGGCTGAACGATTATTAAGCTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 16943-16516 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGD01000026.1 Ureibacillus terrenus strain ATCC BAA-384 NODE_26_length_17423_cov_427.715772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 16942 32 100.0 33 ................................ CCGCAGGACGTGAAAGTTTGCTTGCTTCTTGCT 16877 32 100.0 35 ................................ AACAAAACATTACCGTTCAAATCAAAACCTATAGG 16810 32 100.0 35 ................................ TGGATTCGCCAAAATTTCTTTTTCTCTCTGTTTTA 16743 32 93.8 35 ................A...........G... TTCCGTTTTAGTTTCAAAATGTAAATGTGTACCCG 16676 32 81.2 30 ..T........TA...A.A...........T. AGTGGTTCGAATTTCTCATATCCTGGTTTG 16614 31 71.9 36 A.TA...T...-A.A.AA.............. ACTTCAATGCACCCACTGGTTTTTGTTTGTTCGATA 16547 32 68.8 0 ...C........A.TAA.A.A.....CC..G. | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 88.0 34 GTCGCACCCCGCGTGTGTGAGGGGATTGAAAC # Left flank : CCCATGTCCCATTCCGAAATAATTCACAAAAAATTTAGCACATTCTTTCGGAAAGGGGGAGAGGGATATTCCGAAGGAATGTGCAAAAAAGAGTCTTTTTTGTGCGGAAATAAAGTGATAATTTACACATGATTTCGCTTTTTCGGAGGAGAGCTCGTTCGGGGCGTTTATGGAGTGTTACGGGAAGTTGGCGGCTGGATTGGAGAGGGAATAGGCCGTCGGAGTGGGGAACCGGGATTTACCGGTTCTCTTTTTTTGGCATGGGGAGCGGGACTTATTGAAGATTTGCTGGCATGGTTGCCGTAATCGATTGGTGCTAATGTCAAGTGAACATAAAATTCCCGGGGGATTCGCACCTCTTGGTATTCCTGAATTTTCGGGGATTTTGTATAATAAAATTAAAGTTTTTGGAGGGCATTTTTTTCGATTCGTACTTTTGGCCTTCGGAGCCCTTGAGCCACAAGGGCCGAAAAAGTTGGC # Right flank : TAACCCTCCCTCCTAAATCCCTCTTGTTGCTTTAACAAGATCGTTTTTTAAGTTTTTTAATTTTCCGCTTGCCAAACAAAAAACGCAGCCTTTGCATGGCAGGGAAAATCCGCAAAGGCTGCATTTTTATTTGGAATTCTCTGCTTTTCCCACATTCGTGCGGGGACTGTAAGATTTTCAAAAGCGGTCCGATTATTTTGCTAATATGATGGCAGTTGGTGGAGGGGGTGTTGGGCAGTTTGGGGAAATGGATTTGGTTGGTATCGAGAAAGGTATAAAACTGAAAAAAGTGCTGAACTTTGCGTTATCTCTATATTGATTATTTCTGGATGAAAAGGAATTGTGGACGGAGCAGGGGCAGGCATCTCGCTCGATTATATATAATGAAAAGCAGGCAAACACGGATGCCAGGACGATGAAAATCAGTTCTTTGTATTTTTGGGAGGATGGCAAGTACATTCAGCTCCTTTTCAATTGGTTGAATTTGTAAAATATAGAAC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGTGTGTGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 772-275 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGD01000003.1 Ureibacillus terrenus strain ATCC BAA-384 NODE_3_length_199492_cov_385.575392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 771 30 100.0 36 .............................. AACATGGTTTTCTTTTGCTGTCGTAATAGCCATTGA 705 30 100.0 37 .............................. TCAATAGCATTTTTAATAAATGCATAAATATCAGGCC 638 30 100.0 36 .............................. TTGAGTTTGAAATGGATGCACTGGATTTTGGTATTG 572 30 100.0 33 .............................. CTCTTCTTGTGTAATCGTGCCGTTTCCTAACGC 509 30 100.0 38 .............................. TATCTTATTTATTTCTTTTGTCAATAGATTTTTTAAAA 441 30 100.0 37 .............................. GATGGTCGTATTATTTCCATTGAGGACTCGGCTACAA 374 30 100.0 40 .............................. ACATCTACGAAATAGCTTCCATATATCAAGTGCCAGTGGA 304 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 8 30 100.0 37 GTTTTGATCTTACCTATGAGGGATTGAAAT # Left flank : ATGAATATATTTATATGAATCATCTTTAGCTTGAGATTCAGAGAGTGAGGGTTGGTCGTTGTTTGTGATCCTTGTATATGACGTTGGAGAAAAAAGAGTAGGAAAAGCGTTAAAAATTTGTAGAAAATATTTACATTGGGTACAAAATTCTGTGTTTGAAGGAGAAATTTCAAAAGCCAACCTGGTAAAATTAAAAAAAGAATTAGAAATGTTAATTGATAATGATGAAGATTCCGTTATTTTATATACGTTTCGTTCGCAGAAATATACCGGAAGAGAAATCATGGGAAAAGAAAAAGCAACGACAGATTTTTTGATTTAATTTTGTCGTCGATCGGTCTCACGACAGCAACCCCGAGGGATCGACGACAAATTATTTTTGTATAATTTATAGAAATCCCAATAAAATCAATGAATTTCATTATTTTCACGAAAATTTCAAATTGACTATTTTTTAATAAAAAGTTACTATATAGCTAACAAATGTTGATTTTATTAGG # Right flank : TTGTAGACGAAATAGAGCTACTTAAAACAGTAGCTCGCAGCTTGTAGACAAAGTCCCTAACTAGGGGCCAAATCTACAGGCTTTTTTGTATAATAGGGATAGAATTCTTGGTTAACGGGGGAAATTTAGGATGTTATCGAAGCGTACAGACAATAATCGAAATCAATTGGAAATGGTGGCTCTTGATCAATTGGTTCCAGAAGATCATTTGGTAAGGAAGATTGAACAAGCCATAGACTTTGATTTTATTTACGATCTTGTCAAAGATACCTATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 19963-16663 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGD01000003.1 Ureibacillus terrenus strain ATCC BAA-384 NODE_3_length_199492_cov_385.575392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 19962 28 72.4 38 A.G..A..........AG.TT..-..... ATCAATTATATAAAGGTTTTTTGGTTAGAGATTTTAGG 19896 29 100.0 36 ............................. AGGCCTCAATGCTTCATAGACCACAGGAATTGCTTC 19831 29 100.0 36 ............................. AATTTCGTTATGATGTTCAACCGCATTTGAAAAATC 19766 29 100.0 36 ............................. CAAGGTGCTGATATAGTAATTGGAGCGAGAATGCTT 19701 29 100.0 36 ............................. AATTAGCATTTAAGTTTCTTTTTTGCCCGAATCAGC 19636 29 100.0 37 ............................. TCTTGCCGATTGCAAAAGGGATTGAACAAGAGTTGAC 19570 29 100.0 36 ............................. AATTTTCTATTGAGGAGGGATAGTATGGCAAGTATC 19505 29 100.0 36 ............................. AGGTGTGGCGATATTCGGAACTATGTGGGAAGACCA 19440 29 100.0 36 ............................. GGAATACTTGGATGCCGTTGATGCTGCTTATGTTAC 19375 29 100.0 37 ............................. CTGATACAGGAATGACGGAAGAACGGTTGCGTGAACT 19309 29 100.0 37 ............................. GCACTTGAGGATATTGCAAACACACTTCTAAACGCTT 19243 29 100.0 36 ............................. TGTCAACACTGTCGATAGTTATCGCAGAATTTTTGA 19178 29 100.0 37 ............................. GAGAACACCTGAATAATACCCATTATGAAAGTTAGTG 19112 29 100.0 35 ............................. TAAACGCGTGCCGTCGTCACGTTCCGGGCCAATCC 19048 29 100.0 35 ............................. TTAATTTCTTTAGAGTGTTGATAATCTTGCGCTTC 18984 29 100.0 36 ............................. ATTATGGCGACTTCCAATATAAGACCGGCAGATTTA 18919 29 100.0 36 ............................. GTGCCATGACAGCGGAAAAGACTACTACGATTACAT 18854 29 100.0 36 ............................. GAATATCTTTTGCCGGCGATTGAAGCGGCTCAAGAA 18789 29 100.0 38 ............................. ATCATCATGTACTCTTCGTTTTGATTTTGAATCATCGC 18722 29 100.0 38 ............................. CGTGTTTCTCATACGCTGGACGTAAATGTGGATAGGCA 18655 29 100.0 36 ............................. CTTCAACAAAGCCGGTTTGTTGCGAACGCTTCTTAA 18590 29 100.0 36 ............................. CATGATCGTCTTTCGGCGCTTTCAATTTCGATGGAC 18525 29 100.0 35 ............................. AAGAAGAAAATGCAAATGCCACATCAGATTTGTTG 18461 29 100.0 36 ............................. TAATAATACAAACTAAAACTAACGTGGCCCGTTTGC 18396 29 100.0 35 ............................. CGACTATTTAATTTAAAAACTGTGATGTCCGCTTG 18332 29 100.0 37 ............................. GAATGTCTTGTTCTGTTTGTGTGATGCGTGTTTCCGC 18266 29 100.0 36 ............................. CTTGACTTTGGTATTTTCGTTCGTATTCATCACCAT 18201 29 100.0 37 ............................. ATTCATCATAATCCGTTTCCAGTTTCGTAATTTTTCC 18135 29 100.0 37 ............................. TCTACATGATGATTAGCCGTTACCTTACCTTGTTCGA 18069 29 100.0 38 ............................. GGATGCTTTTCTTCAGCTTCTTCGCGCGTTTCATAGAA 18002 29 100.0 36 ............................. ATATAAATATTGATATATCAACATTTTTCTTTATTT 17937 29 100.0 37 ............................. ACCTTCGCGCAAAAATTCCCCCACCGGCAAACAAAGA 17871 29 100.0 39 ............................. CAAGTGCGTCGAAATAATCTGCTTTCGGTTTCATGAGAG 17803 29 100.0 37 ............................. TTCGCACGCATTTTTAAACGTGAACGCAACTCATTGT 17737 29 100.0 37 ............................. CTATATTCAATTCGTCAAAGAAGATCCTGCTGAAACA 17671 29 100.0 36 ............................. TAAAAGATTGGTGCAACCGATTTGCGAATGCGAGAA 17606 29 100.0 37 ............................. ATCCAAGAGAAGCCTTGTCAAATGCTTTCCAACCAGT 17540 29 100.0 36 ............................. AGTGTTCCTGCTACGTCTCCCAACACAGGAAGCCAT 17475 29 100.0 36 ............................. AATAAACACACCCCCAGATGTCAATCATCTAAAAAT 17410 29 100.0 37 ............................. ATTGCTCCTTGTAGCTGTTGAACAACATTTCCTCTCG 17344 29 100.0 37 ............................. TTTTCTATCAAGTTAGAGATACATTAAACGCTTTTGT 17278 29 100.0 36 ............................. ACCACAACAAGCAAAAGACCCTCGTAAGTGTCAACC 17213 29 96.6 37 ................A............ ACCTGTAAATCACTCATGATAGAGTAAGATGGAGAAC 17147 29 100.0 36 ............................. TCTTCATCGGGGATAATGATACGATTTCGGTCTTTG 17082 29 100.0 37 ............................. ACTATATTTAGAAAAAACCGGTGAATTTACGGAAGAA 17016 29 100.0 36 ............................. ATTGCTTTGTAGATAAATTTGATCCAAGTGGAACAG 16951 29 100.0 37 ............................. GAAAAAGCAACGCCGCAATTCACGAACCTTACTTACC 16885 29 100.0 35 ............................. TCTGTCATGGGCTGGAAATTGGCAGGATGTTCCAA 16821 29 100.0 36 ............................. TTCCAAATTGCACGACTTGACCGCAGCGGCACTATA 16756 29 96.6 36 ..........................T.. GGGATTGCGAAAGGAATGTTTATACCGAGAGATTGG 16691 29 96.6 0 .....................T....... | ========== ====== ====== ====== ============================= ======================================= ================== 51 29 99.3 36 GTTTTCTATTAACTATGTGGAATGTAAAT # Left flank : CATCGGAAACTGAAGCGGCAGACGTCTTATCGATTTTTAATTCGTCTAGAATGCTACAAGCTCATAAAACATTTCATTGGCGATGAAGATTACAGAGCTTTAAAGGCATGGTGGTAGATGTGTATGTATTAGTTGCTTATGATGTGGAAGAAAAGCGGGTGCCAAAGGTTAATAAAATTTTAAAAAAATATTTAACTTGGACGCAAAATTCTTTGTTTGAAGGAGAAATCACAGAAGGATTGTTAAAGCAATGCATGGCTGAAATATTGCCAAAAATTGATCCAGCGCATGATTCGCTTTATGTTTATCGAATAGCTAATCCGAAACACATTAAAAAGGTGGTTTATGGGGTAGAAAAAGACTTTGAAAGTATGTTTCTTTGAATTTGCAGTGGATCATTTTTCAATATGATTGCAGTGTAATCCTTGGTAATAAAGGCTTTAGGGCGATTTTAACAAAAAAGAAAAAATATAACCTTCCATTTACTGCAAATTTGTATA # Right flank : TCTAGTCATTCCATATGTTCTGAGAATTGTTTTTTTTAGTGTTTGGCAATTAAGAATAAACATATTTGCCGCTTTACATGGAGGGTATATACGGCTTGCCCCCTTTGCAAGAAATCCTGCCCACAGAGGCTCCTTGTCAAGTAATCGGAGTTAAGAATAATTATTCGATTTTGAATGAAAATATTCTATAAAGAGATTCTGCCCTAAATGAAAAAAGAGAATTTGAGGAAAGCTCAGATACTCTTTTTTTATTGCGTCCGGAGCCCGAGAGAAGTGAAATCGTAAGCCCGAAATCAAACGACGCATACAAATCAATCACACCTCCCTGTAACATAGAGTTATCGATGACAGAGGAGGTGTTACTTTGACAATTGAAAAACTAAATATTGTACCTGTCAAATTAAATTTTGATTCCGATTCAACTTCACCCTCAACAAGTCGTGGCCCTCTTATACCTGTATGTGTGATTCAAGCAACGGATTTGAAAATTTCCTTCAACC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTATTAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 31199-28682 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIGD01000003.1 Ureibacillus terrenus strain ATCC BAA-384 NODE_3_length_199492_cov_385.575392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 31198 29 100.0 38 ............................. TTTGTTGAATCCTAAAATCACTGATGCATCACTGCCAC 31131 29 100.0 38 ............................. TTGAAAGCTGAGATGAAAGCTATCAATTCAATTAAAAA 31064 29 100.0 35 ............................. TCTTGCACCGGATGTTCTTTTGTAATGAGATTGTC 31000 29 100.0 37 ............................. CCAAATTCGCACCCAAAATCAGATTATCATTTTTATC 30934 29 100.0 37 ............................. TTTTTTCTTCGGCTTCATTGAACGGGACGTATTCACC 30868 29 100.0 37 ............................. CGCTATTTTTAACGCAAGAGTTGATGTACGTTTTCAT 30802 29 100.0 35 ............................. GTTTGATATACAGAGTGTCTTGAACGACGACGAGG 30738 29 100.0 36 ............................. AGTTCACAAACACTAAGGGGAAAACGATTTTACCGA 30673 29 100.0 37 ............................. TATCAACGTTTGCATAAAATCCTGCATAAACGTTCTT 30607 29 100.0 36 ............................. ATGCGTTCTTCGAAGCTAACAAAGAAGAAATGCTGC 30542 29 100.0 37 ............................. ATAATAAGTCGCAAAATCCACGTTGTGTTGCTTTTAA 30476 29 100.0 37 ............................. ATGCGATGAAATTCAGTGTGTTACAACTACTATTGAG 30410 29 100.0 36 ............................. AGTTTTATCCCACTTGTATTTCGGGTTTCTTCTTCT 30345 29 100.0 36 ............................. CTCGTAACATGGCTTTAATAGATAAACAATTTCCCG 30280 29 100.0 37 ............................. AAACAATTGAATACGAGTTGAAGTAAATTAGAAAACC 30214 29 100.0 35 ............................. ATCGAATCCGAAGAGGTTCCAGAAGGTAAAGTCTT 30150 29 100.0 36 ............................. TCAATTACATTGTAAACTCTGGATATTTAATTGCTG 30085 29 100.0 36 ............................. CTGAATTCCGTTTTCATGTCCGGTGTAATCGGAAAG 30020 29 100.0 37 ............................. GGCAAGATGCCGACGATGGTGACGCATAGCAAACAAC 29954 29 100.0 37 ............................. TCTTGCAAATTGCATGGGCGATGAACAAGGCGGCAGA 29888 29 100.0 36 ............................. AAAAAACACCGTTGCCCAAATTGACGAATCACCAGC 29823 29 100.0 36 ............................. ACTTGCTTGTCTACTGTTACCGTTGTACTGTAATCG 29758 29 100.0 35 ............................. TGATAAAACAAACTGAAATGAACTGAATCCGTCGA 29694 29 100.0 38 ............................. GTGGCTATTCCGGGGGCTGTTCGTTTTAGCCCTGAACC 29627 29 100.0 35 ............................. TGTTGCGGATTCGGGTAGGTTGTCGCAATATCAGC 29563 29 100.0 37 ............................. ACACAACGCATTGATATTTTTGACGCGACTGTATTTG 29497 29 100.0 36 ............................. CGCCACATGCCGACACGTTCATCAAGATCGACATAT 29432 29 100.0 37 ............................. CATTTTGAATCATGGCTCGATCAATTTGAATATGTGG 29366 29 100.0 37 ............................. ATATTTCCAAGTCGATATATTGCCCGGCAAGAAACTC 29300 29 100.0 39 ............................. CGCGGATCTTGTTCATCGATAAAATCCATCGCTTCCAAA 29232 29 100.0 40 ............................. CAGCAACCGCATCACTTTCGTCATCTGTCGCAAACTTTCC 29163 29 100.0 36 ............................. TATATGTATCTGAAACAGATTGCGAGTGAGTTTAAT 29098 29 100.0 35 ............................. ACTGCTATGTTAACAGCTTTGCTAATTTCCAATTT 29034 29 100.0 35 ............................. TGTTCAACGATGACCGCAAACGCTTCAGGGTCTAA 28970 29 100.0 35 ............................. TTTCTTGTTCTACCGCTTTTGACTTTGTAAACTTT 28906 29 100.0 36 ............................. AGATTATGCTCGATTCAGGACATGGCGGTCGGGATC 28841 29 100.0 36 ............................. TCAGTTGAAGTTGTTCTATTTGTCTCGATTTTCTAT 28776 29 100.0 37 ............................. TAATGAGCCTAGTGAGGAATCCATAAGAGCAGCTATG 28710 29 89.7 0 ................A.......A...G | ========== ====== ====== ====== ============================= ======================================== ================== 39 29 99.7 36 GTTCTTTATTAACTATGTGGAATGTAAAT # Left flank : GGAACCCCATGAATTAACTCCCAACGTCCTTCCCATTGTTCATAGTCTTGATAGCGGTAACGTTTATGCGGTTCAGGCGTAGTCATATGGCTTTCCCTCGCTTAACCGTACTTTTTTCTCATTGTACCGCATTTATTTTAAGTTTTAAAACCATTGTCTTTACTATTACTCCGATTTTTACATATTCTTTAACTTTACGGAAAAATTGGAAAGGGAAATTATAATGAAATCAAAGTGGGGATTCATGAAAAGATAAATTTCCGCTCTTTATTTCCATTTTTTTGAATACAATGAATCGATCAAATTTTAATGATGATTTTGCAGTGGATCATTTTTTAAGATATTTGTCTGAAACCTAAGAAAATAAAGGCTTCCAGCATCTTTTTTGACTTTTTATTAAAACCCGACTGCCTATTTACTGCAAATTTTAAAAATGTTACATTAACTTTGAGCTTATAAATCCTGTATATATGAGGGTTTTAGAAATCTGATAAACTAGG # Right flank : TCGGGATCGTTTTGATTATCGATCACTAGCTTTGGACGCTGGGATGGAAAATTTTGCTTTCCTTGCAATGTGTGAGCAGAAATTTTAACTAATGAAAAGTGCAGAGTTTTGCAAAGAATAATGCAAAAACTCTGCACTTATTTTTTAATAAGGACTCATGTATGTGCATAAAAGCGGCAAATTCAATGATTGACAGACTTATACTTTTTTATAGGAATTGAGAAGCAATTAGTGTAGCTATAGTAGTTTAGCATATAAAATTTTTTCTGAAATGACGAAAACGGCATTCCAGAATTTGCAGAATGTTCTATGATTTAATTAAGGAAAGTTTTAATAGAAATGTCAATTCTGGTCGCTTAGAAATTTGCAATAATATTAAGTAAGAAAAATGACTCACTAAATTTTACCTAAGTATTAAATAATACACATAGTATTGTTCAAACAACAATTACTAAATACAAAATTTATCTTAGTTAGTATTTTTTAATTAGAAAGGAGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTATTAACTATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //