Array 1 262645-263771 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHMY01000002.1 Escherichia coli strain PN93 PN93_NODE_2_length_329880_cov_24.6609_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 262645 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 262706 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 262767 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 262828 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 262889 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 262950 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 263011 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 263072 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 263133 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 263194 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 263255 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 263316 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 263377 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 263438 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 263499 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 263560 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 263621 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 263682 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 263743 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCTTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 289471-290414 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHMY01000002.1 Escherichia coli strain PN93 PN93_NODE_2_length_329880_cov_24.6609_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 289471 29 100.0 33 ............................. ACTCCTGCTGTAGCGAAAAGGGCAGAGCATAGC 289533 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 289594 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 289655 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 289716 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 289777 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 289838 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 289899 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 289960 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 290021 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 290082 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 290142 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 290203 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 290264 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 290325 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 290386 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //