Array 1 423686-424297 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG666993.1 Corynebacterium accolens ATCC 49725 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 423686 35 86.1 28 T.A.A.C..-.......................... GCGAACCGGAGGTAGCAGGAGGGAGGTG 423749 36 97.2 28 A................................... GGCCGCGCCCCCGACAAGCTGGAGGTAC 423813 36 100.0 28 .................................... CTCAGCGCCGCTAATCCAATCCCAGTCT 423877 36 100.0 28 .................................... GGTAACCCGGGATAACGTCCATTTCTTG 423941 36 100.0 28 .................................... ATAAAGGTACTGTAAGGTACTAAGTACA 424005 36 100.0 28 .................................... TCAAGTAAATGTCTTATTTCCTCCTCGC 424069 36 100.0 29 .................................... CCCACCGACAGGAAGCCTCTCAACAAGAG 424134 36 100.0 28 .................................... CACCCCGCGAGATAGTGCTTGCTCTAAG 424198 36 100.0 28 .................................... AAAGGAAAGTAAATCATGCTAGGAACAT 424262 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 10 36 98.3 28 GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Left flank : AGGTCATCGACCCGTTTGCGCAGTTCTGCTACCGGCAGCGTGGCCACGAACTTAATCTCCGCGCGGGAGTAGCGATCCTGGCGCGCGCCCGCGGCCTGGGCGAGGTCGTGGTAGATGCGGCGGGTGCGCACGAGGCCATCGCGAAGCGCCAGTGCCTGCATCAAGTTCTTCTCGCCATCAAAATCAGTGGCCACGTTTGTGGCATTGATGGCCTGCACGAGCTTATCGATGCGCCCAGTAATGCCCTCCAACTCGCGCAAAAGCTCGGCCGGATCCTCGTCCGGGGTATCGCCCTCCTGCACGCGCACGACGGAGAGCAGGCGCTCGCGCAGCTCATTGAGCCGATCCTGCGCCTGCGCGCGCTCTGCTAATGCCTCTGCCAGTAACATGGTTCCTCCTTCAGGGTAGGTAGGAACCAACCTAGCCGGGGTGGGGGCTGGGGTCAATGGGGCTGAGACACAAAAGTGAAGCTGTGAACGTATCGCTTGTGGCTCTCCCAG # Right flank : CCAGTGCGGCCCAAAAAAGGCCGTTTAACTGGAGTTTATTGGTGATCCTGCTTCAAAAAATTACGAGTTGGGACGGTTTTTCCTCTACTCCAGCGGGCTCTGCCTTAGAAAATCTGATGGCTTTTGCCCACTGATTATCAGTGACGGAAATTATCCTGATGTCGCCACCTTCTGGGAGAGCTGTCTTTATTTGTTTGACGGTCGAAGCGATTCTAGAAGACAGTGGGAAGTACTGGACATAAACGCTTAGTTGAGACCTGCAGAATCCGAGATCTAAGAGATGGTTTCGGAATTTGTTCGCTTCACTAGTTTGTTTCTTAGATTTAACAGGCAGATCGAACATCACCACACACCACATTGGTTCACTATCCTTCGCTGGCATCGAGGATTCCTTCCCAACGGGGTACGCTTAGATCACGAACTGCTCCCTCGACATACAGGCCATAGTGCTGGCCAAATTCATTAAAAACGGTGCTTAATGATTTTCCATCAGCTTCGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGTTCAGTTCTCATTACCCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 227486-233725 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG666994.1 Corynebacterium accolens ATCC 49725 SCAFFOLD2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================= ================== 227486 29 96.6 32 ............................T TGCCGTTTTGGCCATCGTCATGCCTCACTTTG 227547 29 100.0 32 ............................. TTCGAACTCATCCTCACCCACGACCAACGCTT 227608 29 100.0 32 ............................. GACGAAAAGGCCCCCGCCCCGTGTAGGGTGGG 227669 29 96.6 32 ............................G TAGATATTGTCGATACCGCTACCGGCCGCTTT 227730 29 96.6 32 ............................G CTACTGGGGTTCGACTCCCCGGCAGGCCACTG 227791 29 100.0 32 ............................. CAAAAAAGACGGCGCCTACAAAGACACCATCG 227852 29 100.0 32 ............................. CAGCCCAAAACACAATAGCCCGACTAGCAGGC 227913 29 96.6 32 ............................G CCGCCCGCCGCTCCGGCCTCTCCGAATCATGG 227974 29 100.0 32 ............................. GGCGTGGAATCATTCAGCGAGATGGGCACTAG 228035 29 100.0 32 ............................. GCCGGATTTGCGGACGGTTCGCTACAGCAATT 228096 29 100.0 32 ............................. CGACGTAGATGCGCTGAAATTCCTCATCAACA 228157 29 100.0 32 ............................. CTCAATTGCTTGTAGAGGGCCGCACCATGGCC 228218 29 100.0 32 ............................. CCAAGCAAAAATAGCCACATTCCCAGACCACG 228279 29 100.0 32 ............................. TCGACCAAGCTGTCAGGGACGCCGGGTGTTCC 228340 29 96.6 32 ............................G TCAGCGCCCGGCACAGCACCATAGGCGTCGGC 228401 29 100.0 32 ............................. CGCCTGGTGCTTGTGACCCTAGCCGATAGGTA 228462 29 100.0 32 ............................. CCGCGCCGCGTCAGCACACTTCCAGACCGAAT 228523 29 100.0 32 ............................. CGCGCCGAGCCCGGTGTAGATGACAGCTGGGA 228584 29 96.6 34 ............................G TTGCTGGACGAGTAAGGGGATAATGAATGTTTGT 228647 29 100.0 32 ............................. CTCGGCCAATTCGGCCTGCTGCGTATCCCCTT 228708 29 100.0 32 ............................. CAGCCCACCAGCACCCACATCGTCACCATCAG 228769 29 100.0 32 ............................. GCACCGCCCCCGCCGCCGGATTCCAGCGCCCC 228830 29 96.6 32 ............................T CTAAGAAACATGCTCGCGGGGCCAGTATCATC 228891 29 100.0 32 ............................. CCGCGTTGCCTTCCCCGCCACTACCAATAGTC 228952 29 96.6 32 ............................G TCAGCCGGCGCCACGGCAGGCCAAAAGGCATC 229013 29 96.6 32 ............................G CACACAATTTCCTTCCCACCAGTAGTAGGTGA 229074 29 100.0 32 ............................. TACAGCCCGGCGACAAACGCACCGTCACCAAC 229135 29 96.6 32 ............................G CAGCTGCAGAATCGTGCCAGCCACGGCCGCGA 229196 29 96.6 32 ............................G GCCGTTTAAGCCTGCTATCGCCGCAGGGGTGA 229257 29 96.6 32 ............................G AATCTAGCGCCCCTGCTTCACGTTGATGTGAA 229318 29 100.0 32 ............................. TGACTGCCCACATGAAGTGAATGCCGATACCC 229379 29 96.6 32 ............................G TCCGTGAGCTCAATCAATCTACCCGTGATGCC 229440 29 96.6 32 ............................T CAATGAGCTTTTCGCGCAATTCCTCCAGCGTG 229501 29 96.6 32 ............................G CCACGCGTACAAGGCCAGAGCGCGGGAATCGC 229562 29 100.0 32 ............................. TCGCAGCCACGTTCCGAGACCGGTGGTTTCGG 229623 29 96.6 32 ............................G CGATGCTGGACGAGCATCGTGAGGCGCGGCGT 229684 29 96.6 32 ............................G TGACCTTCCTGCCGGGCATTGTTCCGCATCGT 229745 29 96.6 32 ............................G TGGTGGACATCGCAGCGTGCCCATATGTATCG 229806 29 100.0 32 ............................. GGCTCCTCCATCACGCTGGACTATTCAGAGGC 229867 29 100.0 32 ............................. AGCAGCCCAATACTTCCGGCGGGTAGTCTCCA 229928 29 96.6 32 ............................G ACCAGGCAGTCCCCGGTGGTCACTACTCGTGC 229989 29 96.6 32 ............................G AAATGTGCACAACATATCGCATATAAAGCTTG 230050 29 100.0 32 ............................. GGCGCGGACTACGCGCCACTAGAATCGCCGTG 230111 29 100.0 31 ............................. AATTCTTTCAGCGGAACGCGCCGGTCTCGAT 230171 29 100.0 32 ............................. GTTCTTCCCCTCCTCCATGGTGTACGGGTTCA 230232 29 100.0 32 ............................. CGGCGTCAATATCCGCGATGGCAAACGCATTC 230293 29 100.0 32 ............................. ACCCGCAGGCCAACAGTTTCAGTACTCGAGGT 230354 29 96.6 32 ............................G TCGCAGGAGTCCTTAAAATCACGCGCAAAACC 230415 29 96.6 32 ............................G ATTTTTCGGATGTCGCCGCGGTCATCTTCGAT 230476 29 100.0 32 ............................. TACTCCAGCAAGCCCGCGAACACAGCGGCCTA 230537 29 96.6 32 ............................G ACCCGCAAAACCACCAAGACCACTGAGGAGAT 230598 29 100.0 32 ............................. GCTGCGAATCGGTTAGGGCGTAGGCACCGGTC 230659 29 96.6 32 ............................G TTACGTATCTACCCAGGCGCAGGGCCTGATGG 230720 29 100.0 32 ............................. GGGCTCGCGATTGCATTCGGGTGATAGAGCGC 230781 29 100.0 32 ............................. CTCGGCCAATTCGGCCTGTTGGCCATCCTCCC 230842 29 100.0 32 ............................. GGCCACCAAGAGTGCTGTTAAGCACACCACCG 230903 29 100.0 32 ............................. GAGACTAATCGCACTATCCGCAATTCCATCAA 230964 29 96.6 32 ............................G TTTTCCTCATTGTCCAGGCCCGCGGTGGTGTT 231025 29 100.0 32 ............................. CACGATTGGGCGCGCAAGGCGTTTGCTACAGA 231086 29 96.6 32 ............................G CTCGACCGCGTTCATTTCGAGCTGACCCACCG 231147 29 100.0 32 ............................. CGAAGAGGAAGCACACACCATGAACGAGACTA 231208 29 96.6 32 ............................T CAGTACCCGCAGCAGACTAACCCCCAGCAGCA 231269 29 96.6 32 ............................G CGCATCCGAAAGCGAAGAGTCCTAGTCATGGC 231330 29 100.0 32 ............................. CGAAGAGGAAGCACACACCATGAACGAGACTA 231391 29 100.0 32 ............................. CCGGCTGGACACCTGTAGGCAAGGCAATTTCC 231452 29 96.6 32 ............................T CAGCCCGCGCCGCTGGTGACCTAGGACAAAAA 231513 29 100.0 32 ............................. CAGATTCCATTCATTACGTGGAGACTCCTCCA 231574 29 100.0 32 ............................. GCACACCACTTAAGCGCACCCCGATGAAACGC 231635 29 100.0 32 ............................. CGCAGCACCACTCCCATTACCACCACCGATGG 231696 29 100.0 32 ............................. CGAGGAAAGCTGAATAATCCGCCAGTGCCCGC 231757 29 100.0 32 ............................. CGCAGCAGAATGGTTCACCTGGCTCGAAGAGG 231818 29 96.6 32 ............................G CGCACGATTCCTCCCCACCAGTAGTAGGTGAA 231879 29 96.6 33 ............................A CGCGGGCGACGATGACACCATCGGTCTAGCCCC 231941 29 100.0 32 ............................. CCCCACCTCCGAGGACTGCCACGCCGAAATCG 232002 29 100.0 32 ............................. ACCTTGTCTGCGAGGTGCTTTTCATCCGCCTT 232063 29 100.0 32 ............................. CGGCCCGGGCTGACGAGGTATGTCTAATCCCC 232124 29 100.0 32 ............................. AGCAACGGTTAATGCTGGGTCAAGCACGCGCT 232185 29 100.0 32 ............................. GCCTAATGCGCTACCACACCTACACCCCTCCG 232246 29 96.6 32 ............................G GCACGCCCGACCGGCAAACTGAACCTCAGAGC 232307 29 96.6 32 ............................G TCCAATCGCAGGAAGCGCAGGATACCGTAAAG 232368 29 96.6 32 ............................G CGTGGGGATCTAATCATCCAGTGGGATGAAGG 232429 29 96.6 32 ............................G GTGACGTGGTTGACCGCAATGAATACCGCGCC 232490 29 100.0 32 ............................. CCAAGCCGCCGAAATCGTCCTCGTAGACAACA 232551 29 100.0 32 ............................. TCGTCACCGCGATGGACGATAAGGGCAATCCG 232612 29 96.6 32 ............................G GGCGGCCGCCGGTGGAGTATCGACGTGTATGC 232673 29 96.6 32 ............................T GATGGCAAAACCGTCACCACCTGCGCCAGAAG 232734 29 96.6 32 ............................T GATGGCAAAACCGTCACCACCTGCGCCAGAAG 232795 29 100.0 32 ............................. ATTCTCGTTATCCGTGCGCCAGTACTCTGCCC 232856 29 100.0 32 ............................. CCGCCCAAGGAAGACGCGCCGGAAGCCCCGAC 232917 29 96.6 32 ............................G CTCTCGTGAGATTCCTCTAATACCAGTGCCAG 232978 29 100.0 32 ............................. GCGGTCGCCGCTCGACTGTCACAGAACGACAT 233039 29 100.0 32 ............................. GCGGTCGCCGCTCGACTGTCACAGAACGACAT 233100 29 96.6 32 ............................G AACACGCCGTTAAGCACGAGAAAGCCCTTGAA 233161 29 100.0 32 ............................. GCCGTCCATGCAGCCGGGCGCATCGGACAGCA 233222 29 96.6 32 ............................T ACGACGGGTGCATCGGCCGGAATCATCTTCTC 233283 29 100.0 32 ............................. GACGCCCGTACCCTGGGGGAGTGACCCGACTC 233344 29 96.6 32 ............................G TGCGGGCGGTGAGCACGAGCACCAGGTCCGCC 233405 29 100.0 32 ............................. CATGCTGCTCGCAATCTTGCCCACTGACAGCA 233466 29 79.3 201 ..A...T..C.T..........G.C.... TCAAAGTACAGAAAGGAACCAAAAGATGACAATCGTCGTCGCGCTTATCAGCGCATCATTCATCATCACTAAAGCACCAGCATGGGCTACTACCACTGCGCTAGTAGCCATGATCGTTTGCTTAGCTCTGGACACACGCGAGCAATGGCTAGAAAGAAAAAATCATGCAGCTTAAAATCATTGGCGCAGGCACAGAGAAAG C [233490] 233697 29 82.8 0 .......T...A.....AC.........T | ========== ====== ====== ====== ============================= ========================================================================================================================================================================================================= ================== 100 29 98.2 34 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : TGAACTTGAAGTCATCGCTTCTGGTCTTAACTGGGCAGAAGAGGAAACGTTGTCATGATGGTGCTGGTTATTACTGCTTGTCCCGCTGGACTACGCGGCGATCTGTCCAAGTGGCTCATTGAACTGACTCCCGGTGTATTCGTGGGACGTCCCTCTGCTCGTATACGAGATTTGCTCTGGGATCGCACAACCGAGCTTTGTAAAGATGGCCGCGCACTTTTGGTGTATTCAGCCGCGAATGAGCAGGGAATGGAGTTCAAGACTCACAGACATCATTGGGAACCTACGGATTTTGACGGGATTACCTTGATGACGCGACCGACTAAGTCTAGGCAACCACAGCGAAGGACTGGATGGTCTCAAGCCCGACGTAACCGTATTTCTTATAAGAAACAGAAGGGAGGATATTAGACCGCGTGGAGCTTCGAGGGTAGCTTTCCCCAAAATACAAGTCGTATGTAAAATACGTTTAAGGCTCGAATTTCTGCTGTTCAGCAAGT # Right flank : TACCAACCCTCGAAAGGACTTATCATGGACATCATGTCTAAAATTTCAAGCGCACTAATAGTGATCGCCGTGCTTATCGCGCTTACTCTAGGGGATACCCCAATATTCTGGGTAGTCATGTCCCTCACTGCGGTTACGCTCACAGTTGAGACCGTCCAACTCGTGCAGAAGTGGCGGAAAAACGCAGCCTAAAATTGTTGGCCTAGATACTGGTGATGAATGCGCGCTCCCCGCGTGAGCGGGGATGAGCCGTCTTGGATGACATATATGGGAACGCCGACATCGTGCTCCCCGCGTGAGCGGGGATAATTTTTTCTTGATTTAATGCCTCAAATTTCCTGCTACCCAATAATCAAAACATCGAAAGGACATCCAACAACGACGAGCAGCACTTCGGCTATGAGGGGCAGAATTCAACTTCGCTGAGGCTCTAACGTGGGTTCCAGTCGCAGCACGGACATCCACTGTTGGGCGTCGCGCACTCAACTGGGGTTATTCTA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //