Array 1 32681-31869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHV010000026.1 Akkermansia muciniphila strain CSUN-19 AmIV assembly_contig_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 32680 31 100.0 34 ............................... TATTACGACAAATCCCAGGTCTATACACGACAGG 32615 31 100.0 34 ............................... CCATACCGGAAATAGTACCGTCCATGTGACGGCG 32550 31 100.0 34 ............................... TGCTCTGAAAAACGGTAAGGGCGCCAGACTGCCG 32485 31 100.0 34 ............................... ATGACTGCGTGCCTGGACATCAACCCGTCTTGGG 32420 31 100.0 34 ............................... GGTGCGCTCCTCTGTCTCACGCCCCACTCCTTAA 32355 31 100.0 34 ............................... CCGGCGCACAGTTCGGCGCGATCCAGCGGGAGAC 32290 31 100.0 34 ............................... TTGCACAGCGCAGAGATGCAGCGCTTGCTCCCCT 32225 31 100.0 34 ............................... ATTGCCACGGTCATTGACCGCATCGGGACGGGCA 32160 31 100.0 33 ............................... AAGGGAGGCAGCGGCGTGGCGCATGTGCTGCGC 32096 31 100.0 36 ............................... GATTGAGGCGGCAGAAGGAATTCCCCCCGCCATCTG 32029 31 100.0 34 ............................... TGTGATTATCAAACAAAAACCGTTGAAACCTACA 31964 30 80.6 34 .....C....T...A....A.....-...G. CCGAATGACTTTTAGTCTTTCATCTTTAGTATTT 31900 31 83.9 0 ........T...........AC...A...T. | T [31878] ========== ====== ====== ====== =============================== ==================================== ================== 13 31 97.3 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCGCTTTTTTCTCCATTTCACAGGCTTTCCGCTCCAAGAACGGAAAGCCTTTTTTATGCCGGAATGTTGTCATGCACGGCGTCCCTCGTGCCGCACGGTCGGGAATTGTCCGGAAAACGAATGTGGAAGGTCCCATGAAATCATGGAAGGAGGCCTTTTCCCGACCTTCTTCCTGTTCCGTCTTCATCGCACACGCGGGAAAGTTTCTGGACGAAAGGCGCGGAACGGAATACTATGGCCTCTGCATCGCAGCAGGCGAGGGTTGTCGGGACGGCTGGAACGACTTCGTGGCGGAACCTTCCTCCGTCCTTCTCACTCACCGCGCCAACCCCCGGCTCACAGAAAAATCCCGGAACACCGGCGATTCCTGTAACGCTCAGGGTATCTTAGATTGACATCTCCCCATATACCATTTTAGGCGTGGAATACGCATCTCCGCGGACAGGTTGGCGCAAAATACCCTTTGCGTGCCTGACTCTCAATATGTATATATCCCCGCC # Right flank : CATCATGAACGCATGTTCCGATGTTTTCTTATGATGATTCCTTTTGGCTGAAAGGCTTTTCCATGACGTTCAGGCCATGAAAAAGCGCCGGTTCCCACAGGGAGGGGACCGGCGCTTGCGGTATAAGGGGGGAGGGGTTAATGGGCGCAGCCGGCGCAGGCCCAGCCTTCGCGGATTTTGGCGAAGAAGTCGTTGCCCTTGTCATCCACCAGGATGAAGGCAGGGAAGTCTTCCACTTCAATTTTCCAGATGGCTTCCATGCCCAGTTCCGGGTATTCCAGCAGTTCCACCTTTTTGATGTTGTTCTTGGCAAGAATGGCGGCGGGGCCGCCGATGGAACCCAGGTAGAAGCCGCCGTGCTTGTGGCAGGCGTCCGTCACCTGCTGGCTGCGGTTGCCCTTGGCGATCATGATCATGGAGCCGCCGTTCTCCTGGAACAGGTCCACGTAGGAATCCATGCGGCCCGCGGTGGTCGGCCCGAAGGAGCCGGAGGGATAGCC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3813-3393 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHV010000040.1 Akkermansia muciniphila strain CSUN-19 AmIV assembly_contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 3812 31 100.0 35 ............................... TCCAACACTCCCAGGAAAGCACGAGCCTCACAGAG 3746 31 100.0 33 ............................... CCGTCCGCCGCCGGATAGCTTGACGGAATGAAG 3682 31 100.0 34 ............................... GGAAAGGACTGCCTGACCGAGCCGCTGCGGGTGA 3617 31 100.0 33 ............................... TACGTATTGCCTGGGCATCGCCGCTTCCATGGG 3553 31 100.0 33 ............................... ATCCGCCGGTGCAAGGGCGGTTACATGCCCCAG 3489 31 100.0 35 ............................... AGGCAATCGTCGGGCATGATTCCCGTGATGTACAT 3423 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 7 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GATGGCCTGCCTAGCGTCCGCCGTTTCGCTCTTCCTTGTCTGGCTGCTGAACCTCAACAGGTGGACGCGCAAGAGCATCATGTAAAAGATCCGGATATTTGTTTGCACGGACGCTGCGGAACGAGTGAAACTGTTCCGCAGCGTTTTTTGTTCGGAAAGGCTTTTTTCCGTGGGGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCATCACGTGCAGGCACCGGTTGTCCGGATGAGGCATCTCTTTTGAAGAGAAGAATCGGCATCCGTGGTTCCCGGCGCCAACCCCAAGCACACAGAAAATTCCCGGAAAGTCGGCGCTTTTTGTAACCTGTTGGGGATGTTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTACTTGCAGATTGATATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCTCCCCCGCC # Right flank : TTCCGCAATGCCGCCCTGCGCCGCAGTGTAACGCGCCATGACATCTGATCAATTGACGACAGGTATCTGATCAATTTAGCCGTCCCTGCCTACTCCGGGCAGGGGGTGTGCAGGGCTCCTGCATCGCCTCTGCAAGCGGCCATCAGGCCGCCCCAATCCACCGCCTCGTCATCCTCCCTGGTCACACCGTCCTGCAGCATGGCCGCCCTGGCGTCGGCCAGCAGGTGCATCACCCTGGCCCGCTCGCTGGCCGGCTGGTGATCCTGGCGAGGGCTGCCGGTGGTTACCATTGCAAACCTGGCCGCATAACTCTCGGCGCTCGCTGTCCGGCTGGGCCAGCACCAGGCCGTCCACTCGCTCCAGGGGCTGCGCTGCCTCCACGGCTCCTCGATGCGGCACACTGTTGCCGGCACCCTGGCCAGCACCTCACGGCCGATGGTCACATCCTCCGGCGCTAAATCATCCAGCAGCGTCCAATCCATCTCCCGGTAGAGCCGTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4108-3488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHV010000044.1 Akkermansia muciniphila strain CSUN-19 AmIV assembly_contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 4107 31 100.0 34 ............................... AATGCTGGATGGAAAGGTCCGGTCTCTATCTGGA 4042 31 100.0 35 ............................... CGGATTGTGCGGGTGCGCGATTGGGCCGCAGATGT 3976 31 100.0 34 ............................... AACGTCCAGCCATATCTCGCCGGCCGTAAAGCCG 3911 31 100.0 35 ............................... CGGGATGCGGTCCAGATACCTGCTCAGGTCAGCGT 3845 31 100.0 36 ............................... AAATCCAAAAGAATCATATCAATCCCTTATCAATAA 3778 31 100.0 35 ............................... TATGATCTCCTTAAGAGAGTTTTTGCCTGGCATCT 3712 31 100.0 33 ............................... CCCTCACGGGTCCGCTCACGTGCAGGCAACTGT 3648 31 100.0 34 ............................... TCCGGCCGACGCCTGTTGCCTCCGCTACGTCGTA 3583 31 100.0 34 ............................... CGCGTTACATAGGAGGTCGTCTCGCGGGAAAATA 3518 31 74.2 0 ...T...................TCAT.CGG | ========== ====== ====== ====== =============================== ==================================== ================== 10 31 97.4 35 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : TAGGTCCTTTATCTTACCTGACCTCTCCGCAATATCCTCGCACGCTTTAGCAGTGACGTCGTCCTCATCCCTCAATCGCATGGCATGCAATTTGTCTATGGCATCATTGAGCAGGTCCATGAGGTCCCGGCGTTGTTGATGATAATTGATTAGTCTCGATGTGATGTTGTCGTCCATGACCGACACATCGCTCTGATTAACCTCACAGTCCAGTCTATCCGGACATTTTTAATTTTTCGTCGGGTAATCCTTGGCGATTTCGATTTCTTGCAGCGTGGACCCATATCTGTGCAGGGCGTCTGCACACCATCTGCATAGATCTTTCCTGGGTGATTCGTTTTGATCAGATACTTGTCATTGACCCGTGTTTTGCCCTCCGTTTTGATCAGATACCTACTTGTGCTCGGCATCGCTTGCAACCTCTTTTGTTTTCAAGCTTCCAACGGATTTCAACCTTAATTCAACACTGATCAACTATCCTGTCGTCCCTCACCTGAGCG # Right flank : ATTGTTCATATTCCAGCATAGTGCTCCTTCATGTACACAGGAGAATGAATAAGCAACAGTTATGCTTCAATATTTCACGATGCTAGAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATTCAAGGCCGGTCAGTCTTCCATGTTATCCCCTTATGGATCATGATTTCCCGTCAGTCATTCCACAGGTATTCCTGATATTTTATCAGGCTTCCTGCCTCCGGCAGCTGTTTGTATGAGATAGTTTGCCCTGTGAAGACAAGGGGTTATCCCGTTATTGCTTCCATCTTTTGAGGTGCGGGAAGAATTGCTTCATGCCGGACCGGGCTTCTTCCACGGTATATTTCTTTTCCGAGTCCTTGTTGAATTCATCAAGGTATTCCAGGTTGTGCTCGATCATTTCATCCATGGTGCAGTCCCGGGTGAAACGGCCCTCTGCATAGCAGTAGTGGCAGTAATCCTCGTTGC # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8910-8360 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHV010000049.1 Akkermansia muciniphila strain CSUN-19 AmIV assembly_contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 8909 31 100.0 34 ............................... TTCTTCAGGTCGTTGATTTTGTCCTCCACGATCT 8844 31 100.0 35 ............................... CCGGTCCAGGTCATCCATATCTCCGGGGCCAGGTG 8778 31 100.0 33 ............................... TCCGGGCGTCAATTAGAGACACCCAAAAATTGT 8714 31 100.0 33 ............................... CAGGCATGAGCGGTCCACAATCACTCTCTGCCG 8650 31 100.0 33 ............................... GTTAAGACCACCCGCGCATTGTTGCCCTACGAC 8586 31 100.0 34 ............................... GAGGGATGCCTGGCGCTTCCTGGGGTCTGCCACG 8521 31 100.0 33 ............................... TTCTAGATAGGGGGAACTAAGAGTCAAAAATGA 8457 31 100.0 36 ............................... CGTCACGTATTCGGTACGTGCGTCAATGAGGGATTC 8390 31 90.3 0 ..............A...T........C... | ========== ====== ====== ====== =============================== ==================================== ================== 9 31 98.9 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : ACGGGGCCGCCCTTGAGGGCGGCCCCGTTTCATGTTGGCGGAAAAGAAACTAACAAATGGGCGGGAATGAAAAATGGAGGCCGGAAAAAAAGCGGAACTCACCCTTGAAAACTCTGTGGACAAATGCCGGGACTGTCCTGGAAAAATGAACCGGGAATACGGATGAAAGACAAGCCGGGAATGACGGTGGTGTTCGAAGAAGCTTCTGGACGTTCCCCCAGGGAATGGCTAGCATGTCGGCATACCACCTGACTGTGCACAAAGCGGTCATGGCAGGAACATGAAACAATTCGTGCATGTCCTTTCTGCTGCGGCCCCCTTGCGCCAACCCCAAGCTCACAGAAAATCGCCGGGAAACTGGCGCACTCTGTAAGTCATTGAGGCTCGAAGATTGACAAACGAACCACTCATCATTACGACCTGCAAGGCGCAGGATGATTGAACAGGTTGGCGCAAAACGCCATTGGGACCTCTGACTTTCAATCCCTGCGCTTCAGGCC # Right flank : GCGGGGACGCTGTTATATGTTGCATACTTGCAGTTTGTGATGGACAGGAAGGAGGGAAAAGAGTGATATGAGTACGGTATGCAAAAGGATTGGTTGAAAGATCTTTTGGAGTGGAGTCCCCTCTTTCTGGTACTTCTGGCAGGGGGAGCGCTGTGGCTGTATTCCAAGTGGCAGCTCAGGAAGGTGGACAGATCGTTGAAGGAGTTATGGGGGAGCATTATCCGGAAGGCTGAGTCGGGCGATGCGTATTCCCAGTTTCAGGCGGGACGCATGTACCAGAAGGGAAATGGCGTTTCCAGGGATGCCGTATTGGCGGATGAGTGGTTTCACAAGGCGCTTCCCGGATTGAATCGGGAGGCCAATGCCGGAGACAGGGACGCCGCCTTTTGCCTGTACGAGTGTTTCAGAGAAGGGTTGGCTGTGCAGAAAGATGACGCCAAGGCTCTGCTCTGGCTTCAGCGCGCCGCGGAACAGGAGGAGCCGGAGGCCATGTTTGCGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 59173-58936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHV010000005.1 Akkermansia muciniphila strain CSUN-19 AmIV assembly_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 59172 33 100.0 34 ................................. CACTCTATTTTGGATGCGGGAAGTAGCTTGTGAG 59105 33 100.0 34 ................................. CATCCGTAGGAATCGCCGTCGGAGTAATGTCCGT 59038 33 100.0 34 ................................. CCACTGATTACCAGCACATGCGCCCGCCTATCAA 58971 32 87.9 0 ......................-......T.CG | C,TC,C [58940,58943,58948] ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTCTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCCGTGTTTGAATGCGAGGTCTCTCCGGCCCAATTGGTTGACATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGCGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCACAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGTGCTGTTTGACATGGCCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAGGTCGGCGATTCTTGTAAGACATTGGAAAACGCAGATTGACAACCAAGTATGATGAAGAGAAGACGGTATGTGATGTGCCGTCTTCGTGAAGTTGGCGCAAAGCCTCACTTGCATGATTGATTAACAACATGTACCGTTGAGGCA # Right flank : ATGATTAAAAAGCACCCCGGACCAGATAAGTCCGGGGTGCTTTTTTGTTTTCTGCCGCAGGAGTCAGAGAATGGGACGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCTAGTTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCCGCCTGGGAGTATTCTCCGTCTGTATCCCGGAAGACACGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTTTCTCTGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCCACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGTTTCCGTGATGGTGCT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10451-10952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHV010000054.1 Akkermansia muciniphila strain CSUN-19 AmIV assembly_contig_54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 10451 33 100.0 34 ................................. ATAATCCGGAGGACGTGGCGGCCCTCCTGGATGC 10518 33 100.0 33 ................................. CCGGACACCTTGGCATCACCGTACACCTTGGCA 10584 33 100.0 35 ................................. TGTCGGACATGAGCGAGAAGACCCGCGAGAAGTTC 10652 33 100.0 34 ................................. GAGGACCCGGACGCTACCTGGAGAGCCGTGTTGC 10719 33 100.0 34 ................................. GTGGAGATTGCGAAGAATGGAGGGGTGTTGCTGG 10786 33 100.0 34 ................................. AGCAGGAAGGAGAAGCGTTTGTTTGACGCCTGGG 10853 33 100.0 34 ................................. TGAGGCTGACGGGTACAGGGCTGCCGACACGACG 10920 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAGTACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGCCCGCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCAGATCCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTCACCGGAAAGGAAACTGGACGCGCTTGAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAAGAAGGAACATGCTCACCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTGCAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCACTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : CCATCCACGGAAAATGGTTTACCCAAAAGCTGTTGGTCGCACCTCACATGAGGTGCGACTAAACCGTTTGGGCAAGCGTTGGAATATCCATCAGAGCGGACAGCAGAAAGAAGAAAACCGCATTTCCCTGACGTGATTATGTTCGCGATAGTTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTGTCCAGTCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATGCCGTTTCCATAAAGTCTTTTTTCCTGCCGGATGTAAATCCGCCTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTCCACATCCGCGCTTCCCCCAACGGGATATTTTCCATTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATCCGGGCGGCCCACGCATTTCCACGCTCCACAACCCGTACCCTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //