Array 1 2195-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHHY01000001.1 Streptococcus uberis strain NCTC4672, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2194 32 100.0 33 ................................ ACTGGTGATAAGTTACAATTGGCATCGGAACAA 2129 32 100.0 34 ................................ ATAAACTCTGACTCTGGTGCCTGCGACAAGCAAC 2063 32 100.0 33 ................................ TTAGTAATTGAAGAACCTGTAAAAATAAATAAA 1998 32 100.0 33 ................................ ACAAACCACACTTACGCCTTTTACATTTGAAAG 1933 32 100.0 34 ................................ AAGAAATGTCTGTTGAATCTGCTTTGCGAGAAAT 1867 32 100.0 33 ................................ ATCAACATAACCAAGCAAATATGGAACAGAAAC 1802 32 100.0 36 ................................ AAGAAGTATCTTGCTAAATAACCATGTTTGATATTT 1734 32 100.0 35 ................................ ATAAACACTTAAATCTGTTGTCATATAAAATCCTT 1667 32 100.0 33 ................................ ACAAGCCTTTAATGCCATGGTTACGTGCTTACC 1602 32 100.0 33 ................................ ACTATGAGGTAAGTCAGTCAAACCGTCAGTTGC 1537 32 100.0 33 ................................ AAAGTAACTCTATAAAACTTTTATCATTGATAG 1472 32 100.0 34 ................................ ATCTAATGATTTTGGTAAAAATTGTGGTTGATAG 1406 32 100.0 35 ................................ TAAACGACCTTTAGAATGGTCATCTTTATCGAACC 1339 32 100.0 33 ................................ ACGATAGACTTTTGATAACTCAAGGGACATGTC 1274 32 100.0 35 ................................ TAGTATTATCAAGCGTTTAAGCTACGTTAAAGGCG 1207 32 100.0 34 ................................ TTCAATCTTCATTTGCTACCTCACTTAATTCATC 1141 32 100.0 34 ................................ AAATCTAGTGACCCTTGCATCTAAATGTGATGAC 1075 32 100.0 34 ................................ AGGTAAGTACCAAGATAAACTTAATCCTTTATGC 1009 32 100.0 34 ................................ ATTCATCCAGTCGTAAACATAAACTGTATACCCT 943 32 100.0 33 ................................ TCAAATTGTGAGATGACCGCTTGTTGATTGACT 878 32 100.0 33 ................................ TGTGTTAATTGTCATAGTTACTACTCCTTAATT 813 32 100.0 34 ................................ CTTAAAACAGGTTATACCTATTCCTTCCATAAAA 747 32 100.0 34 ................................ ATAAAGAAATCAGTAACCCTTTTATCCTTTGTAT 681 32 100.0 33 ................................ CTGTTTTTGTAGAAAGTTATAACCCAAAGACAA 616 32 100.0 33 ................................ GGTTAAAGAAAAAAGCCTAGAAAACGCTACGAA 551 32 100.0 33 ................................ ACTTACTTCAGCAAGTAATTTTTCCTCTGCTAG 486 32 100.0 33 ................................ AGATGGATAGCGAACTTAAAAATGCGATTGATG 421 32 100.0 35 ................................ ACGTAAATTAGTTAGATCGATTGTTTGAACAGGTT 354 32 100.0 33 ................................ ATTTATAGTGAATATTTATGCTTGAATGACTAT 289 32 100.0 35 ................................ TGTTATTTCAACAGTTTAACACGCTATCAGTTTCA 222 32 100.0 33 ................................ CTGTTTGACCTAACGGCATAGCGTGAATCACTA 157 31 96.9 34 .......................-........ TTCTCTAGTCCCTAAATCTACAAAGTTGTCATCA 92 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 33 32 99.9 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : TAAGAGCCATTCGCGGCGACTTAGATAGTTACCCACCATTTTTGGTCTAGGAGGCGCTTATGATGGTTTTAGTGACTTATGATGTCAACACTGAGACAGCAGCAGGACGCAAGCGACTGCGCCGTGTAGCCAAGCTATGTGTAGATTACGGGCAGCGCGTGCAAAATTCTGTTTTTGAGTGTTCTGTTACACCTGCAGAATTTGTGGAAGTGAAAGCTAAATTAATGGAAATCATAGATATAGAGTCTGACAGTATTCGATTTTATTTGCTAGGTAAAAATTGGCAAAATCGTGTGGAGACGATTGGTCGTGATGAGAGTTACGACCCGGATATTGGTGTTTTACTTTTATGAAAAATAGGTGTGCGAACCTAGGTTACTCATTGAAAGTTGGTAGGTTCGTTGTGAAAAACAGCAAAAAACGTGTTATTTTCGATAAATTGACTTTGTAGAAGAACTTTATAGTTTGATAAATAGCACAAAACAGTGTCATGTTGCGCT # Right flank : TATTTCTGGTGAATATTTATGCTTGAATGATTGAGTCGCACCCTTTGCGGGTGCGTGGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1582683-1581327 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHHY01000002.1 Streptococcus uberis strain NCTC4672, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1582682 36 100.0 30 .................................... CTGTTGATGAAAATACTAAAGTTGTTGCTG 1582616 36 100.0 30 .................................... CTCAAAGCGTAGATGTGCTAACGCCTGGCC 1582550 36 100.0 30 .................................... CTGTATTGGGAAGTGCTTTGATTTGGATTT 1582484 36 100.0 30 .................................... TACAAGATGATGTTGAATTAAGCAAAGACT 1582418 36 100.0 30 .................................... TGATGGCATGATGGACAACTCAAAGCTTTT 1582352 36 100.0 30 .................................... TGTCTAAATCAGTGAGAACGTAAGCACGCC 1582286 36 100.0 30 .................................... ACAGTGGTAAAAAATCACTACATGCCATTG 1582220 36 100.0 30 .................................... CAATTAGTCGAATAAAAAGACTTGGTCAGG 1582154 36 100.0 30 .................................... ACATGTTGTGTGAGGGCTTTTTATTATGGA 1582088 36 97.2 30 ....................A............... GGTTCACCATGTTTTTTTTGACCGATAGCG 1582022 36 100.0 30 .................................... CCTATGATGAGAGCCTGAAATATCGAAGTA 1581956 36 100.0 30 .................................... GAGGTGTTAATTTACCAGATGTTAATACTT 1581890 36 100.0 30 .................................... TAGACGAAACAACAGATAAATGGGATAGCC 1581824 36 100.0 30 .................................... ATGTTTATGATTTTAACTGGTTACAATTTG 1581758 36 100.0 30 .................................... TGACGCAAGTAAGGTTTGATGAGGTGTCTA 1581692 36 100.0 30 .................................... GAGCTGCAAAAGAAGTATGATGGCCAGCAA 1581626 36 100.0 30 .................................... AAATTCCGCAATTGCAGATAACATTGTCAA 1581560 36 100.0 30 .................................... AAACAGGTTTAAGACAAGATATTATCTTGC 1581494 36 100.0 30 .................................... TTGTTTTTTACAGCGAAGATGACTGCGCTT 1581428 36 100.0 30 .................................... AGACAATGAAAAAATTCGGCGAGGCACTTG 1581362 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAACCACTTTATTGATATATGTCAGTTTTTAAACGATCTGTGTCAAAAATATTCTCATTTTTTCTGTATGGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCAACTAATGATTATCCAAACGAAGATCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACACGCTTTATCATTTTAATGATGAAGTAACTTTTGAAATTCCACATGTGAATTCTATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTGATTTGAG # Right flank : AGTGTTCTTAAGTAGATTTGGCAACTGTTTATTTTTAAATAATTCCATATAACCTTAAAACAGCCACTTTCTAGAGTGCCTGTTTTTTTGCTATTTTCTCATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTGTTTAAAATGTATAATTATTAATAAACAAGGCGTAAAAATGTATATATTGAAATGCGTTTTCAGGGTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGCCTTTTATAGTAATTAAATTTTTTAGCCAATTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAAAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1877578-1874153 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHHY01000002.1 Streptococcus uberis strain NCTC4672, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1877577 32 100.0 33 ................................ ACTGGTGATAAGTTACAATTGGCATCGGAACAA 1877512 32 100.0 34 ................................ ATAAACTCTGACTCTGGTGCCTGCGACAAGCAAC 1877446 32 100.0 33 ................................ TTAGTAATTGAAGAACCTGTAAAAATAAATAAA 1877381 32 100.0 33 ................................ ACAAACCACACTTACGCCTTTTACATTTGAAAG 1877316 32 100.0 34 ................................ AAGAAATGTCTGTTGAATCTGCTTTGCGAGAAAT 1877250 32 100.0 33 ................................ ATCAACATAACCAAGCAAATATGGAACAGAAAC 1877185 32 100.0 36 ................................ AAGAAGTATCTTGCTAAATAACCATGTTTGATATTT 1877117 32 100.0 35 ................................ ATAAACACTTAAATCTGTTGTCATATAAAATCCTT 1877050 32 100.0 33 ................................ ACAAGCCTTTAATGCCATGGTTACGTGCTTACC 1876985 32 100.0 33 ................................ ACTATGAGGTAAGTCAGTCAAACCGTCAGTTGC 1876920 32 100.0 33 ................................ AAAGTAACTCTATAAAACTTTTATCATTGATAG 1876855 32 100.0 34 ................................ ATCTAATGATTTTGGTAAAAATTGTGGTTGATAG 1876789 32 100.0 35 ................................ TAAACGACCTTTAGAATGGTCATCTTTATCGAACC 1876722 32 100.0 33 ................................ ACGATAGACTTTTGATAACTCAAGGGACATGTC 1876657 32 100.0 35 ................................ TAGTATTATCAAGCGTTTAAGCTACGTTAAAGGCG 1876590 32 100.0 34 ................................ TTCAATCTTCATTTGCTACCTCACTTAATTCATC 1876524 32 100.0 34 ................................ AAATCTAGTGACCCTTGCATCTAAATGTGATGAC 1876458 32 100.0 34 ................................ AGGTAAGTACCAAGATAAACTTAATCCTTTATGC 1876392 32 100.0 34 ................................ ATTCATCCAGTCGTAAACATAAACTGTATACCCT 1876326 32 100.0 33 ................................ TCAAATTGTGAGATGACCGCTTGTTGATTGACT 1876261 32 100.0 33 ................................ TGTGTTAATTGTCATAGTTACTACTCCTTAATT 1876196 32 87.5 13 ...........................TCTT. ACCTATTCCTTAT Deletion [1876152] 1876151 32 100.0 34 ................................ ATAAAGAAATCAGTAACCCTTTTATCCTTTGTAT 1876085 32 100.0 33 ................................ CTGTTTTTGTAGAAAGTTATAACCCAAAGACAA 1876020 32 100.0 33 ................................ GGTTAAAGAAAAAAGCCTAGAAAACGCTACGAA 1875955 32 100.0 33 ................................ ACTTACTTCAGCAAGTAATTTTTCCTCTGCTAG 1875890 32 100.0 33 ................................ AGATGGATAGCGAACTTAAAAATGCGATTGATG 1875825 32 100.0 35 ................................ ACGTAAATTAGTTAGATCGATTGTTTGAACAGGTT 1875758 32 100.0 33 ................................ ATTTATAGTGAATATTTATGCTTGAATGACTAT 1875693 32 100.0 34 ................................ TGTTATTTCAACAGTTAACACGCTATCAGTTTCA 1875627 32 100.0 33 ................................ CTGTTTGACCTAACGGCATAGCGTGAATCACTA 1875562 32 100.0 34 ................................ TTCTCTAGTCCCTAAATCTACAAAGTTGTCATCA 1875496 32 100.0 33 ................................ ATTTCTGGTGAATATTTATGCTTGAATGATTGA 1875431 32 100.0 34 ................................ TTTAAATTTGGTTAATCTGATTTGTTGCATTTTA 1875365 32 100.0 35 ................................ TGTTAGAAAGTACAGTAAACCAAACACAACAGCTC 1875298 32 100.0 33 ................................ TTCGATGGTTTTTATTATCAAAAAGATTTTGTA 1875233 32 100.0 32 ................................ TAAACACGTTTTAATAAAGCCACTAACAAAGC 1875169 32 100.0 33 ................................ AGTTAACCAATAAGTATATTTTGCGATAAGTCT 1875104 32 100.0 34 ................................ ATTTTTAAGGGCATGGATAACCCAGAGAAGATTA 1875038 32 100.0 33 ................................ ATGAGAGTTTTAGGTTATTCAATTTCTCGCCTG 1874973 32 100.0 34 ................................ TTATGAAGTTTATGACTTCGCATTATTTAACACT 1874907 32 100.0 33 ................................ ATCAGTGGCGATTTAAAAAATACAGGTCTTAAC 1874842 32 100.0 33 ................................ TACTTGCAATCGAAAACGCATTTGAAGATTATC 1874777 32 100.0 35 ................................ GAAGCACTGGTAGCTGGACTTGACCAAATTATGGC 1874710 32 100.0 34 ................................ AGTAGTTATTAAAGCATTATCTTACGAAAATCCT 1874644 32 100.0 33 ................................ AGTATCAATAACAAGAGTATCACCATCATAATG 1874579 32 100.0 35 ................................ TCAGAATTGCTCTCTGACTATATTGATAAACCACA 1874512 32 100.0 34 ................................ TTACCTGCTGCATCTTTTTCTTGCGCAAGGTTGA 1874446 32 100.0 34 ................................ ATTTTGTGAGTTTAAAGACTTACTTTCTTTAAAT 1874380 32 96.9 33 .......T........................ CATTCCATTTAATCATTCTTATTTCTTCCTTTC 1874315 32 100.0 34 ................................ TACCAATCATGGCGGATAAAGTAATTCTTAATTT 1874249 32 100.0 33 ................................ TTCCCTACGGAAGTGTAAAATCTACACTTCAAG 1874184 32 96.9 0 .............T.................. | ========== ====== ====== ====== ================================ ==================================== ================== 53 32 99.6 33 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCCATTCGCGGCGACTTAGATAGTTACCCACCATTTTTGGTCTAGGAGGCGCTTATGATGGTTTTAGTGACTTATGATGTCAACACTGAGACAGCAGCAGGACGCAAGCGACTGCGCCGTGTAGCCAAGCTATGTGTAGATTACGGGCAGCGCGTGCAAAATTCTGTTTTTGAGTGTTCTGTTACACCTGCAGAATTTGTGGAAGTGAAAGCTAAATTAATGGAAATCATAGATATAGAGTCTGACAGTATTCGATTTTATTTGCTAGGTAAAAATTGGCAAAATCGTGTGGAGACGATTGGTCGTGATGAGAGTTACGACCCGGATATTGGTGTTTTACTTTTATGAAAAATAGGTGTGCGAACCTAGGTTACTCATTGAAAGTTGGTAGGTTCGTTGTGAAAAACAGCAAAAAACGTGTTATTTTCGATAAATTGACTTTGTAGAAGAACTTTATAGTTTGATAAATAGCACAAAACAGTGTCATGTTGCGCT # Right flank : TTTTAGGCTTAGTTGTTGCACAAAGCCAGTGCGCATTATATGGAATTTATATTATACTATATTCAAAAATAAATTTTTTGGTGTTTAATTATCAGTAAAATCTTGATATCTTCACTCAAAGGATGGATTTTTAAAATTCCCTATAACAATCGTTGATCCTGATTGGCCCCAATATTTGAATCTTCAAGACTGATATCAACTTTTATCTACACTTTCACATATAGAAGTTAGACATTTATCTAATTTTTTAGTTCGTTCTAATTAAGGCTTTTTATTACTAGTTGACAGATTTAACTCTATTTCTAAACTCACTTGCTCTAGTGGTAATATCCTGAAATCTTCCCACATTGGTACCATTCAGGGGTGAAAGCAAGTATCCTGTTGATGAAGGTGTAAGGAAAAAGAAAAAGCCAAGGCATTGGCTTTTTTGATGGTCATTTGTGTGAGTGATCAATGACTTTATTCTTTTTGGCTGAAAATGACTTGCTCTGATTTTTTAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //