Array 1 181473-188285 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAQI01000004.1 Xenorhabdus ehlersii strain DSM 16337 Ga0242589_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181473 29 100.0 32 ............................. CCTGCCAGAAAATAAACCTGATAGAAAAAACG 181534 29 100.0 32 ............................. AAATTAACAGTTAAATCCATAAAATATTGTGT 181595 29 100.0 33 ............................. TTCAATGGATGGGAGCTGGATATCAATAGCCGC 181657 29 96.6 32 ............................A TCCTGAGTAAGTTCGTTGTATTATCGACCTGC 181718 29 100.0 32 ............................. GGAACTGACAGGTAGGGCGTTGGACTGGGCTG 181779 29 100.0 32 ............................. GCTGAATGCAGAGGAAACAATGGAAAACCAAC 181840 29 100.0 32 ............................. AGATGTATACCATTACCTTCAACAAACAATTT 181901 29 96.6 32 ............................A GAGTCGATGTTTATCGTTCATACCTTGAACCG 181962 29 100.0 32 ............................. AACGTTAATGCGAGTATTGAAATTTGGCGGAA 182023 29 100.0 32 ............................. CTATTATCTCTTTTGCTCTGTGTGGTTTCGCT 182084 29 100.0 32 ............................. ATTCACGGGCTGCCTGTATCGCATACATAGAA 182145 29 100.0 32 ............................. TAGGCGAAAATGTATTGGTATTGGGTTCCAGT 182206 29 100.0 32 ............................. CCGGTGTCTGTACCACGGGCCTGCCGTGGCGG 182267 29 100.0 32 ............................. CATTTAAATACAGGGCAATTGGACACTGATAG 182328 29 100.0 32 ............................. AGATTTTAATCATTATTTGTGCTAACGATATA 182389 29 100.0 32 ............................. TCAGCCCCTTTGTATTTATCAATAACATCATC 182450 29 100.0 32 ............................. AACACTGCGTCAGACATCCAAATTGGATACAG 182511 29 100.0 32 ............................. ACGGTCGAGTCCATGGCGTTACGGGTGTGACA 182572 29 100.0 32 ............................. GCCGTTGTACAGTGAAAATTGTCTCTGTTGAT 182633 29 100.0 32 ............................. GTGTAATCAGGACGCAATCAATATTGCTATCG 182694 29 100.0 33 ............................. GAACGTTATGAATATTAGCGATGCGTGCAACGC 182756 29 100.0 32 ............................. TTATGCGAATTAAAATTTTGTTTGGTGCGTCA 182817 29 100.0 32 ............................. TACAGTTAGCGTAATTCTGACATCCTGACGCA 182878 29 100.0 32 ............................. TTGCTATTAACACCACCCAACAAGAACGCATC 182939 29 100.0 32 ............................. CCCCTTACCGCCAGGTTCTGACTCATGGTTTC 183000 29 100.0 32 ............................. CCTTTCCACGTCTTGTCATCAAACTTAATGAA 183061 29 100.0 32 ............................. ATGCGGACAGTATCATCATGCTGTATCGCGAT 183122 29 100.0 32 ............................. AAAAAGAACTTCCAGTCTAGGTTAGAGAGTCG 183183 29 100.0 32 ............................. TAATAAAAATCACCCTCACTCTCTCAGGCGAA 183244 29 100.0 32 ............................. AAATGATGAAACACACATTCTTGGGCTATGAG 183305 29 100.0 32 ............................. GGTGGCAATAAACGCATCAGTATTTTGTTTTA 183366 29 100.0 32 ............................. ATCCATCGCCACTACGTCCCGAAATATACTGG 183427 29 100.0 32 ............................. TATTACGTCATATCAAAAGATAATGCCGACGT 183488 29 100.0 33 ............................. AGGTTGAAAGTGCTATAAACTTAAAAATTAATG 183550 29 100.0 32 ............................. ATGGGGGAGACGACGGTTATCGCCAATGCTTA 183611 29 100.0 32 ............................. CAAAAAGAAGAACAACGCTTGAACAGAATTGC 183672 29 100.0 32 ............................. CGCAAGAAATGCGAGCAGCGCAGTTGGAAAAC 183733 29 100.0 32 ............................. AATGCAGTCTTATTACATCAGTTGTGGGATGA 183794 29 100.0 32 ............................. CCAACAACAATGGGACAGATCCCAATAGAACC 183855 29 100.0 32 ............................. CGGGGCGTCGGTGGTGCGCATCGCATAGTGGC 183916 29 100.0 32 ............................. TGTCTGTAAATTTTTCAGATAGTTGCGATTTG 183977 29 100.0 32 ............................. GTTTGCTGTTAAAAATCTCATAGAGAAAAACA 184038 29 100.0 32 ............................. CTTTTAAGATAGCCTGCTCTACAAAATCAGCT 184099 29 100.0 32 ............................. ATGGAACTGCTTATTTAATCCAAAGCGAAATA 184160 29 100.0 33 ............................. CGACAGGAGGCCATTGATGCCGTCAAGTCCGGC 184222 29 100.0 32 ............................. CAAACAAAAAAATCAGTTAATGGTACACCAAT 184283 29 100.0 32 ............................. CGCGAGGCCGAGAATGTCAGGTCAGGATACCG 184344 29 100.0 32 ............................. TCACTCTGGGATTTAGTCACGGTCGGCGATGC 184405 29 100.0 32 ............................. GGTTCCAGCAGGCCCTCGCTGATGGGCATATC 184466 29 100.0 32 ............................. GCATTTCGGTAACTGAAAATTAGAAAGAGGCA 184527 29 100.0 32 ............................. GTAATGAATGCCGTTAAATGTACCTAACAGTA 184588 29 100.0 32 ............................. TCTACAATAAACCTGCTCATTTCTTGGAATAT 184649 29 100.0 32 ............................. TAAATTGGCTGTATCACGAATATAAATATTGG 184710 29 100.0 32 ............................. ATAGCTACGAAAGGCGGCTTAGTGATTATGAT 184771 29 100.0 33 ............................. TTGCTATCAACGCCACCCAGCAAGAAAGCATCC 184833 29 100.0 32 ............................. GAAGATGAGATAGCCGAAATCATGTGCGGCGC 184894 29 100.0 33 ............................. GGGTTCCGTGGTGGACACCCAAAACGACACCGC 184956 29 100.0 32 ............................. GGGGCAATTCTCTCCTTTAACTTAACTCCTTG 185017 29 100.0 32 ............................. CCTACGGTATTTTGCTGAGTTACTACGCTCAC 185078 29 96.6 33 ............................A GCAGGGAAAAACGGGCGTTGCCCAAATCAAAGC 185140 29 100.0 32 ............................. GTGGTACGGAAACTGGACTCTTTTCCCTCGCC 185201 29 100.0 32 ............................. CCAACGTTGAGCAGTCACTGGCTCAAGGGGTT 185262 29 100.0 32 ............................. ACTTTGCCTCGTGGGGCGACGGTCTTTTGGAA 185323 29 100.0 32 ............................. CGCACTTGAGAACGGAGTGGCAAATATCAACA 185384 29 100.0 32 ............................. GTCATAATGCTTGTGGGCTATGATTTTGATGA 185445 29 100.0 32 ............................. GTGAAACCGCTGCGGCGGTTATCGGGATTGGC 185506 29 100.0 32 ............................. AAAGCGAATTATTGCCATTCTTCGAATCCATT 185567 29 100.0 32 ............................. ACAACTGCAATAAAAAATTATAGGGCTTTAGG 185628 29 100.0 32 ............................. TCACTAAACATGGCGCTCTTGGGTGAGAAATA 185689 29 100.0 32 ............................. CCCGCGCGCCAGTTTCGCCAGCTCGCCATAAA 185750 29 100.0 32 ............................. CGCGGTGAGTATAAACAGCTTTATAGCCGCGT 185811 29 100.0 32 ............................. ACAGCGACGGAGAGACTACGATGAGTGAGAAA 185872 29 100.0 32 ............................. GTTATAGAAACTAATGGTTCTGGTTTTATTCG 185933 29 100.0 32 ............................. GCTGCAAAAATCGCTGCTGATGGTGCAAAGAA 185994 29 96.6 32 ............................A ATAACCCGTAAATCCGGGACTTTTTAATATTC 186055 29 96.6 32 ............................A ATAACCCGTAAATCCGGGACTTTTTAATATTC 186116 29 100.0 32 ............................. CGCTACCCGGTGCAATCAATGATCCACAAAAA 186177 29 100.0 33 ............................. GAAATATGGAGTTTCATCGACAATACTAATACC 186239 29 100.0 32 ............................. AGCATAGAGTTAGCCGCAGGAAGTGGCTGCTG 186300 29 100.0 32 ............................. ACAGTAACCCTCGCCATTTCAGGCAGAATTTC 186361 29 100.0 32 ............................. CATAATTTTTCATATACAGATTTTCGCCCTGA 186422 29 100.0 32 ............................. TTTTGCAATTGTGATTTACTGATGCCAATATC 186483 29 100.0 33 ............................. CCTGCTCGTAGTTGCGCACGATGCCAACGGAAC 186545 29 100.0 32 ............................. TCAATAACTATTTTCTAAAAATGTAAAATTAT 186606 29 100.0 33 ............................. CTCTTCCCGATGGCTACCGTTGGCAATCTATCC 186668 29 100.0 32 ............................. CTAGCTGTAATTGCAATTCATCATACGTAGGA 186729 29 100.0 32 ............................. CAGATCGATGGCGAGCCGGGGCTGGAAATAGA 186790 29 100.0 32 ............................. AAATAAAATACCCATCAATACAGATTGTGAAA 186851 29 100.0 32 ............................. CGATCAGTATTTTTCTAAAATGGATGTAGTAC 186912 29 100.0 32 ............................. CGAATCCCCGCCTCCGCTTTTCTGCTTGACGT 186973 29 100.0 32 ............................. GTTGACCCTGTCCGGCGGATGTCATGAACAGT 187034 29 100.0 32 ............................. ATAGCGATGGTGACTATGAAACATATGATATT 187095 29 100.0 33 ............................. ATCTTTTTGAACTTCTTTAATGAAATCCAATGC 187157 29 100.0 32 ............................. TTGATAAAAAATCACCAACCGAAAATAAAGAT 187218 29 100.0 32 ............................. CTCGCACATTTATCATGTCAGCCTTAACTAAT 187279 29 100.0 32 ............................. AGACAAATATCTACAGTCCGATAATCATAGAA 187340 29 100.0 32 ............................. AGACAAATATCTACAGTCCGATAATCATAGAA 187401 29 100.0 32 ............................. GAACTGACCGAACGTTATAATGTGCAATATAT 187462 29 100.0 33 ............................. CCGGGGCGCGGCAAGCTGTCTGGCCTGCTCTGC 187524 29 100.0 32 ............................. GACATTGACACTAATTGGCTGATTGAGCATCA 187585 29 96.6 32 ................T............ TTTTTCTACTGCTTCGCAAAGCTTGGCTATAT 187646 29 100.0 32 ............................. GGTTATCCAGTGTTCAAACGTCAACAGGTGCT 187707 29 100.0 32 ............................. ATGGCATCCTGGATTTTTTTGCGCATCGCTAT 187768 29 100.0 32 ............................. CAATAGTAGGAATAAATAACATTGCAAATAAA 187829 29 100.0 32 ............................. AGTCTGTCCTGTCGAGGAAGCGGAATATCACC 187890 29 100.0 32 ............................. CCCGTAAACAACCTTTTCGTTTAGCTTTGCTG 187951 29 96.6 32 ............................T TATCGTTTTGAGGGTAAGCAGAAAATGCTATC 188012 29 100.0 33 ............................. AGGTCTCTATTGACGTGGATGTCGGTCTTCGTC 188074 29 100.0 32 ............................. CAATTTAATCAAACGGGCATGGAGTTTATTTA 188135 29 100.0 32 ............................. CGCTGCAATAATCTCAGAGTTCATTGAACGCC 188196 29 100.0 32 ............................. TGTAGTAACATCAATGCAGGATAGACAATCTA 188257 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 112 29 99.8 32 CTGTTCCCCGTGAGTACGGGGATAAACCG # Left flank : AGACGGAGAACAGCGCCGTGATCGCAACGGTAAGATCAAAGGTTGCCGAGTACCGCTCATTCATGAGGAGGAACAGTTGCAGTGGTTATCGCGCAAATTAGCAGGAGCGGCGCTGTTATCGACGGCTTGGGTAACACCGGAGTCCCCAATCTATTTTTACAAAGATGATATTAGGGGAAAAATTCAGCCAATATGTTTTGAAGGGCAAATCATCGTACAGGAAAATGAATCCTTTATTACTCTTTTAAGTCAAGGAATTGGTCCGGCTAAAGCTATGGGTTGTGGTTTACTCTCTTTGGGTTTGAGTTAGAGATGATCCTCGTAGCACAAATTTTTCGTATAGGGAATTTCGGTAGATCGGGATGGTTTAAGTTTTGTCTTTTTTAACATTTTGAAAAACAAATATTTTTATATTTAATAAAATGCGTTTTTTAAGTAAAAAACGTGGTGGAATTATTTATATCAAATAAGCTCTTTAAAAACAAATAGATATAATTAGT # Right flank : GCAATAGCGAGAGAGGTTCCCTTCTCTCATTTTACTGCTCCCCATACATACGGAAATAAATATAGTGTTTATCATATCACTTTGTTGCAGATAGAGGTGTTTATAGCCTGTGGAGAACTCAAGTCATGGAGGGCTTTTCAGTGTGATAGGAGCTTATGGTGATATATCAAACATCTTTTCTATTTAATCTTTGCAACTTATTGATAATCTGTATCGCTATAAAAATATCGTTGAGTCGTTGAGGTATAAGGGAATAGCGAGTTTCCAGCATGATGGGAGGGACATGTTATATCCTATTGAAAATAAGACAGATAAAAAATGGTTGAAATCGTCCTATAGTAAACTATTTCCATCCGGTAAAATCCGGAGCAAAATAGGGCACGTTGTTATCATTCATAAAATAGTAATAAAAAATGACATATTGTCATTGTTTCAGCTTTCAATTTGGGCTTACTGCGTTTATGATGCGCGCTTCGTATTTTCAACCGGCGCCACTGGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGTGAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 176005-175731 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAQI01000001.1 Xenorhabdus ehlersii strain DSM 16337 Ga0242589_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 176004 30 100.0 31 .............................. TGATCAGCATCATCCCCATATTTTGCAATGG 175943 30 100.0 31 .............................. AATTTTTCCCGCTGGACGGCGGTAAAGGACT 175882 30 100.0 31 .............................. GCGTGTTCTGACCAATGCATGTCAGTCATGA 175821 30 100.0 31 .............................. ATTTACGGGCGCTGGCATTGGCTCCGAATGC 175760 30 96.7 0 G............................. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 99.3 31 TGTGTTCCCCGTACTCACGGGGGTGTTCCG # Left flank : TCCCTTAATTGAAGAAGTACTTGCGGCGGGCGAAATTTCCCCGCCACCCCCTCCTGCTGATGCACAACCTCCCGCCATTCCTGAACCGGTATCTATCGGTGACATTGGGCACAGGAGCCAGTAAAGATGAGTATGACGGTGGTCGTAACAGAAGCCGTTCCTCCTCGATTACGGGGACGTCTGGCTATTTGGTTACTGGAAATACGGGCAGGGGTTTATGTAGGTAATATCTCGCATAAAATCAGGGAGATGATTTGGCAACAAATCACGGAACTGACTGAGGATGGAAATGCCGTTATGGCATGGCAGACCAACACCGAATCTGGGTTTGATTTTCAAACCTTTGGTGAAAACCGAAGGGAACCGCTAGATTTTGATGGCCTGCGTTTAGTGAAATTTAAACCACTTTCTGAGGATCAGTTTGGGAAAGTTAAAGGCGATTAAAATGGTAAAGTTTTTTCTGTTGATAAAAGTTTTTTAGCACAATTGGTTATATTTAG # Right flank : TTTTATAACGTGACCGGTGACCAGCAAGGATTGTGTTCCCCGTAAGCTCAATGAATAATTCCAATATGCCCCGCATAAAAAACATTAATATAACTATTGATTAAATAAGGTAATAGCAAACCAAAGATAAGATTATTCATTGTCGTTTAACAATGACTTATTGTGATAAGTCATATAAATAATAAATAAAATTAAAACATTTATAGACTATCCTCTTATTTTAAGTAACCGAAATAAAAATCAATATAAGAAATAATTTCAATATCAATTTATTATTTTTACTAACATCTTGGAGAGATAAAACTCGTTCTATTTGATGATAAAACAAACGAATATTCCAAATTGTGCAATATTACACCTACAAGCATAATTCGTTGATGATTGTCAAAAAGAGCTATGATAATCTACGCGCCTTTCCGTCTTAATTCGTTCATTTTATAGACAACCAAATATCAAAAATAGGAAGTGAATTCATTTATGAACTTAACTAACACTAGCAA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTGTTCCCCGTACTCACGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.70,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 192050-187384 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAQI01000001.1 Xenorhabdus ehlersii strain DSM 16337 Ga0242589_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 192049 29 100.0 32 ............................. GAGATGGCACAATCAGTTATTAATTTTATTCG 191988 29 100.0 32 ............................. GGACACCTGACGCAATCTTGAACGAACCGGCG 191927 29 100.0 32 ............................. GGGATCACTTTGCTGTGTACCACCACTGGGAT 191866 29 100.0 32 ............................. TTCGAGATTAATCGCGTTATGGAAGAGTATTT 191805 29 100.0 32 ............................. TGCATCCTCTAATATTAGCTCAATACCTGCGG 191744 29 100.0 32 ............................. CGATAACCCTGTGGGTCACGGTCACGTACCGC 191683 29 100.0 32 ............................. ATTTTTATTCGGTGGTTCTATGGTTTGAGTGG 191622 29 100.0 32 ............................. TCCGTTTATTTCAATGCGAGTGACATTTTCGC 191561 29 100.0 32 ............................. CTCAAACAGAATGCGGTAATCACCCACCCTCA 191500 29 100.0 32 ............................. GCGGCAATTAATACTGTAGGAGATATGAGACT 191439 29 100.0 32 ............................. CCGGGACAGATAATTTCCGCATCCGCGATGAT 191378 29 100.0 32 ............................. GATGGTATCAAGTTAAAACTGCATGATCCGAA 191317 29 100.0 32 ............................. CACACATTTCTAGGCTACGAGGTTGTGGAGCG 191256 29 100.0 32 ............................. TCACCGAGATCGCATAGCTTGAACTGGATAAG 191195 29 100.0 32 ............................. GCTATGGCTTCCGCCTCTGTCAGTGGCGTGAA 191134 29 100.0 32 ............................. CCGACAGGCTTAATTGAGCACTTAATGAAGGT 191073 29 100.0 32 ............................. GTGGCTCTGATGATGACTATAAACAGTGGGCG 191012 29 100.0 33 ............................. CTAAGTCAGCGAATGTGGCTTTAATAGTTAATC 190950 29 100.0 32 ............................. CCTCGGTTGCTGTAACAACCGGGGTTTTCTTT 190889 29 100.0 32 ............................. TCCTTATGGTGGGGTTATTGCGCTTCGCCGCC 190828 29 100.0 32 ............................. CTACGTACAATCAATTTACCGGGTTGCCTATA 190767 29 100.0 32 ............................. TATTCCCTTCGGCCTTGGTGATGATGAGCCTA 190706 29 100.0 32 ............................. CCCAAATCCCGTAATGCAATCTCAATATCATT 190645 29 100.0 32 ............................. GTAATCAGTATTTTTTACAGAGCATCGAGATC 190584 29 100.0 32 ............................. GATTATAACAGCCTAATGACAGGATCGCGGTA 190523 29 100.0 32 ............................. GCATATTCTTTTATGCAGATAAATATTGTCAT 190462 29 100.0 32 ............................. GTTGGCCGGGTTCTACAATGGCCGGTAGCTCC 190401 29 100.0 32 ............................. AATTCATACATTTGGACAGGCATCGACAGAGA 190340 29 100.0 32 ............................. GCTTTATCGTCGGGAAGATCGGATTCAGGCAG 190279 29 100.0 32 ............................. AGATTATAATTCATCCATTAAAGAATTATATA 190218 29 100.0 32 ............................. GGGATAATGCGCGTGATTTTCCTCCAGCGGGA 190157 29 100.0 32 ............................. CGTGGGCACCTCCATTTACATGGGGACCGTGG 190096 29 100.0 32 ............................. CTAATGGAGCGGGATCAACACCCCATTAGCTT 190035 29 100.0 32 ............................. TATTTGCGGTCACCAACAGCACCAAATCGGCG 189974 29 100.0 32 ............................. CCAGTCTCATGATGGAAGCTGAATCTCTATCA 189913 29 100.0 32 ............................. AACTTTAATCCGATCATTTTCATAATGAATAT 189852 29 100.0 32 ............................. CAGTCTCTGACGGGAACACAGGTCGCCTATGA 189791 29 100.0 32 ............................. CCATCAATTGCATTCGCGGCGTTGGCATTAAC 189730 29 100.0 32 ............................. ACGACCTGTTTCATTTAGGTTCTTTTGGTAAA 189669 29 100.0 32 ............................. GCCATGGCTGGTATCGTTTAGGTGATATGTAC 189608 29 100.0 32 ............................. GGTACGCCTTATTTGTTATTTTCTTTCACAAA 189547 29 100.0 32 ............................. ATCTACGCGCCGATCCATCAATGGGGCGGCCT 189486 29 100.0 32 ............................. CCGTCACTTTTGGTATTGATGGTCATTATGTA 189425 29 100.0 32 ............................. CATATTACTCTGAACTTGGAACCGTGGAGCAA 189364 29 100.0 32 ............................. TTATTATTTAAATTTGAAACAGTATCGTTAGT 189303 29 100.0 32 ............................. GGGGTCTGTGCTGATCCCAGTCATAATACGGC 189242 29 100.0 32 ............................. ACCCTAAGCACAACCGTGAACAGTCTGGAAAA 189181 29 100.0 32 ............................. ATAAGTTGGCAGAGCAGGCCAGACAGCTTGCC 189120 29 100.0 32 ............................. TTATTCACTTCGGGGGTCAGTTCCTGCGGGGT 189059 29 100.0 32 ............................. GGATCTTGTCCGTGAGGCTTTATTTCGTTTTC 188998 29 100.0 32 ............................. TAGGCAGCATAGTGATTGCGTCCGGCCATCTC 188937 29 100.0 32 ............................. TGAAAACTACGAGTTAAAGTTCAAGATAGCTA 188876 29 100.0 32 ............................. TGGTTATCTGGAGGTTTTCCGCAATGATTGCC 188815 29 100.0 32 ............................. CACTAGAAATTATTCGCGCTGAAATGCCTGAT 188754 29 100.0 32 ............................. TAGGTGCTATTATTTTTATATCAAATAGTGAG 188693 29 100.0 32 ............................. TGTCGCTTTTGTGATACCAGCACGTTCATACA 188632 29 100.0 32 ............................. CAATAACAGCCATCAGGCGCGTAGTCATAGCG 188571 29 96.6 32 A............................ ATGCCCGTCATCACCTGCTGAATTTTGTTCGC 188510 29 100.0 32 ............................. ATGCCCGTCATCACCTGCTGAATTTTGTTCGC 188449 29 96.6 32 ............................A GCCTGCTTTATGGGCGTACTGTGTCCGCGTCG 188388 29 100.0 32 ............................. GTACCCTATGTTGGTGCCTGCATGGATAGGGC 188327 29 100.0 32 ............................. CGCTCGCCGGTGGCCACATCCTCAATGTCCAT 188266 29 96.6 32 .................G........... TACAGCAAGGAAGATGGTGCTTATTAAATTAG 188205 29 96.6 32 .................G........... CCCTTTTATCGCCTGTATGCAATCGAGTGCAA 188144 29 96.6 32 .................G........... GAAAACTAAGTTGCAGCGAGACATACAGCAAT 188083 29 96.6 32 .................G........... CCCGCTTTTACTTACGAGTACAACAATCCCCA 188022 29 96.6 32 .................G........... GCAGACCAGTATCTTTCTAATGATGTTGAGAT 187961 29 96.6 32 .................G........... GGAACGCATGAGCCGCTATGATGAATGGCTGG 187900 29 96.6 32 .................G........... CTGAGGTGGTCATGGCAGCGTTGACCGATCGA 187839 29 96.6 32 .................G........... ATTTACGATGTCCTCCATGAAGAATGGATGGA 187778 29 96.6 32 .................G........... GACTACAACATCATCCAGAAAAAAGACCGGGC 187717 29 96.6 32 .................G........... GCCATGCTAGTAGAACTGTCAAAAGACATCCC 187656 29 96.6 32 .................G........... GTACATCACGTACCCACATCAATCAATACATG 187595 29 96.6 32 .................G........... GGATATTAAACGCATTAAGGATGCCACAAAAT 187534 29 96.6 32 .................G........... TAATCCATTGTCGCTTTTATTTGCTTTTTCAT 187473 29 96.6 32 .................G........... CTGCTGGTCTGAAATTTACGCGATTCGACCAG 187412 29 93.1 0 .............A...G........... | ========== ====== ====== ====== ============================= ================================= ================== 77 29 99.2 32 GTGTTCCCCGTGAGTACAGGGATAAACCG # Left flank : CCCCAACGAGGTCAGCAACATCTTGTAAAGCTGGGCGTTTTTTCTTCATTTTCAATGTAATGCAATCAGTTATTGATAGGTACAGAGGAATAACTCGCGGTTTTAACATATTTATACATCATTACAACACGCTTTCTAGTGAAAAATGCCAATATACTCGCATCTTATTTATCAGCAATTGCTGAAACTGTGATGACTTACACGTGCTTGAGTGAATATTCCAACATGTTGGTGGATATCCCCGCTACTCAATGCAATAGTTTTCAGACTCTTACTCTCTTTGTTGTTGAGTTAAGACCAACAGGTTCTTTTGCGATTTCAGCAATGGGAATCTCATAAATTGATAAGTAAGAGTTAAAAATATGGATGAAATGTGATCTGAATTACAGATGATAAATCGGAAGAATGAAAGAGAAAATTTGACTGACTTTATAGACTAAAAAAATGGTAGAATTTTTCCGCTCTAAAAAATTTTTATAAAACAGATGGATAAAATTAGT # Right flank : TAATCCCTTGCCCTGCGGTAGATACCGACGACGTGTTCCCCGTAAATCAGGAAATTCTTATTATGAAATAATAACCTTAGTTAGCTCGGTTACTTTGTCGATAATGTCTTGAGGTGCTTTCTCAATAAATTTAACTTGACGATCTGAAAAGTCTAAGGATTTGACCTGATGGATAAGAATTGCACCTTGGGTCGATAATTCTTCGGGTAAGACAACTTCTAACATCATTCCCCTTACGGTACTGGTAATGGGGACCACAACAGCAAATCCGGTATGCTCGTTAAATATCTTTCGAGAGATCACAAACGCAGGGCGGCGTTTCATAATTTTTTTCCCTGCGCTCGGATCAAAATCCAATGAAACAATGTCTCCTTTGTCTGGTATGTACATCAAATCACTTCCTTACCAACAGAGTTAGCATTGATTCATTCTCTATCCTCATCTGTTACCGTGAAACATTCTTTAGGGCTTCCGGCTAACAGTAATTCCAATGTTAACTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGAGTACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGAGTACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //