Array 1 74488-74143 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPAL01000032.1 Campylobacter concisus strain AAUH-12CDdes4 1100425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================= ================== 74487 38 100.0 39 ...................................... CAGCAAATAATGTTTGCTCAAATTGTGTAAATCTGTCGT 74410 38 97.4 39 ....................C................. ATTTTTCACTTTGAGTTCTATGTTTCCATGTAAACTCAC 74333 38 97.4 37 .......................T.............. TTAGCACGACTACCGCCATATTGTATGGTCTTGTTTC 74258 38 100.0 41 ...................................... TGTTTGTCATATTTGGGTTATCCCACTGGTCGCACTTACGT 74179 37 86.8 0 .............................GC.-...TT | ========== ====== ====== ====== ====================================== ========================================= ================== 5 38 96.3 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAACA # Left flank : TTTATAGACTATGTCGTAAACCAGCCATCTTTGAGAAGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGGCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAATCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : CCATAATCCATATATAAATTTAGGCCATTTCACATACATAAAAAGTTGTATTTTATTTTTGAGACGTATTATGATAATAGTGCCATCTATCAAAAGAAACACCAATCTACAAGCAAGAATTGTAAAGTCAAAAAAGATCTATATAAGAAAGCAAAAGCATTCAAATTGTCCTAAGCTCAAATAGTCTATTACCAAGAAACACTATGATGCCTACTCAAATGTGGTCCAGTATCTCTATCCGTTTCAAGTGTTTTAAGTGGATTAGCCAAAATAGTATCTAGCAAAGATAGAGTCTAGTCGTCAGCACTTTTTATCGTAAAAAGTATTTTTCGCAATTATTTTTTACACCAGTGATATTATCATTTATAATAACTTTTGAGCAGAAATATTTTAATGTGAGCTTGGCATTTTTAAAAAGGTAGTTTTTATCTTAATATTTAACGTCTAAAAATAGGTGCCATATTGGGTGCCATCTACTTAAGCATTATTAGCAATTTTAA # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 82876-81185 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPAL01000032.1 Campylobacter concisus strain AAUH-12CDdes4 1100425, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 82875 37 97.3 35 .....................C............... AAAACAATTTTGAATTTTTGCATATTTTGCTCCTT 82803 37 97.3 36 .....................C............... ACTTTATGAATATTGTCTAGTATCCCAGTATTTATA 82730 37 97.3 38 .....................C............... GCTACCGAAATATTCGGTAGTACCAAATTTAGCCTTGG 82655 37 94.6 37 ......................TT............. AAGCTATTTGAATAGCTTCCATTTGACTTTGATTAAT 82581 37 100.0 37 ..................................... TAGCTCACTTGATTGAGCACTTAGCTTTTTAATTTGA 82507 37 100.0 40 ..................................... GAAGTCAAGAAATTTTTTATTGCTTCTTTACCTTCAGCCA 82430 37 97.3 41 .......................T............. TCGTGAACAATTACTGCAGATAAGTATTCAGGTTTATTAGG 82352 37 100.0 41 ..................................... ACTTAAGTAATAAGAAGCGCTTGACCACGAGCGGCTTTGAT 82274 37 97.3 37 ......................A.............. ACTAGTTCAGTTTTGTTCATAATGTATCCTTTTGGAT 82200 37 97.3 38 ......................A.............. TCATCAGTTTCTCCATCAGTCTCTGAGTACTGAATAGG 82125 37 94.6 34 ......................TT............. CCATCACAGCGTAAAAAGCCGTTTGGGATATTTG 82054 37 100.0 39 ..................................... AGTATTATTAAACTAGTTATTATTGTCGCATGTCCTATG 81978 37 100.0 38 ..................................... AGTTTTTCTTTTGTTTGTGAATTAAATTTTGGATTTGG 81903 37 97.3 35 .......................T............. TAAAGTAGGTCACACGCTAGTTGTGGGGCGGTCGT 81831 37 97.3 36 ...................A................. ATCAGCTTCCAGCCTAGATATATGCGGCAGTAAAAG 81758 37 100.0 39 ..................................... TCATCATACTGCATCTCTTGAGGCGCATATTGCGCTTGT 81682 37 94.6 35 ......................TT............. TAAGAGTAGGCTTTTAAATTTATGATAGCAGTCGC 81610 37 100.0 36 ..................................... AAGACATCTCCTGCTTTAATTTGAAGCATAGGTAGT 81537 36 91.9 42 ..................T...T-............. TTTTTCTCCTCAAACATAACACGCTCCTTGTGCTCGCCCGTT 81459 36 91.9 39 ......................TT........-.... TTTATGTAGTGCGTTTTCGGGGCTGTTAAACTCTAGGCT 81384 37 94.6 39 ...................AT................ TTATGAGTCTCATCCATGAGAAATACGTCAAAAAATATA 81308 37 97.3 39 .............................G....... CCATTAGCTCATCATAATCATAAAACTCTGGACTATTTA GGGGAAAAAAA [81273] 81221 37 91.9 0 ......................TT............T | ========== ====== ====== ====== ===================================== ========================================== ================== 23 37 96.9 38 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGGCGCAAGAGCTCTTTGTCTAACTTATGTAGTTCTTAATTTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATACCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGCTTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTACATTTATATGTAAAATTAAACTACTTTATCTACAAACACTACCATCAACTTTTTCATACTTTTATTTTTTTTGGAAACGCTTTGTCCATATCTATTTTTATAATTGCTGCATATTTACAAAAAAGAGAAACTAATAAAATATAAGAAGAGGAGATATTAATGAAATATAAAGTTGAAAGATACAAACTCATCTGCAAAAACTGCGGAGAGATATACTACTTTGACTACGAAGGATCAGATGTGTTAGGTAGGGACTACTTCGACCAAATAGTAACAGAGTGCTCTAAATGTGGCTCAAGAGTTTTAGAGAAGCGTGATTTAAATTTCATTGACACAGCGAAGATGAAATTTAAAAAGATGTTAAAACCAAAAAACAGCTACTTTACAAGGTGATAAGATGTTACCACTAATAGCAATTTTTACAAGTAGAGCGATAGTAGATATCCTACAAATAGGCGTAATAACTTTTTCAATCACTGTTTCAGCAGCCAAGACCG # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [29-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //