Array 1 584012-585432 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPI010000001.1 Streptococcus oralis strain J22 Soralis_J22_DanaHsu_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 584012 36 100.0 30 .................................... CAATAGTTGCTCCAGTATCTTTGTAGACTT 584078 36 100.0 30 .................................... AAACTTCTACCGTTTAGCTAAGCCTATACA 584144 36 100.0 30 .................................... AGTCTTGATTAGATATCGAATGATAATAAA 584210 36 100.0 30 .................................... TAGAACTTAAAGAAAGCAAAATACGGGTTG 584276 36 100.0 30 .................................... GTTTTTCATCTAAATAGTTACATAGATTGT 584342 36 100.0 30 .................................... AAAAAGCTGAACGTGGGGAGTCGTTCTTTA 584408 36 100.0 30 .................................... CTGACTGTTCAAGGTTTGTAATGATTTTTT 584474 36 100.0 30 .................................... CTTTTGAGGGCAAACGAGCTAGCAAGCAAA 584540 36 100.0 29 .................................... AAGTTTAAAAAATGTTTAAAAAGACTTGA 584605 36 100.0 30 .................................... TTAAACTCACATTCAGAACCTAGCGACCGT 584671 36 100.0 30 .................................... TTACGAAGCAATTTCATTTCTTTAGACTTG 584737 36 100.0 30 .................................... AAAATGGGTAGGAAATGTGTTCTTCGGAGA 584803 36 100.0 30 .................................... AATTTTTAAAAAGTATGATATAATAAAACT 584869 36 100.0 30 .................................... CCTCCTCTCAAATAGAATTTTAAGCGAACA 584935 36 100.0 30 .................................... GGAAACGGCTTTGGGCAAGCTCCTTGACCA 585001 36 100.0 30 .................................... TGTTAGACTGCTCACGCAATTGGTTCTCTG 585067 36 100.0 30 .................................... TTAATCGTATGGAACAAGTTAAATCTGACT 585133 36 100.0 30 .................................... AACCCTGATGGATCCACAAACCCAGAGGGT 585199 36 100.0 30 .................................... GTTCTGGTAGTGGAGGTAAAGGCAAAGGTA 585265 36 100.0 30 .................................... TTGATATGCTGATGTTTTCCGTTTCGGCTC 585331 36 100.0 30 .................................... TTCAAAAGCATTTAGGAAAGATTGAGCTGA 585397 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTTACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAGTATGAAATGAAAACAAAATTTCGTAGTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTAGAATTTAAGAATTTATAATATTTTTGAGGGGAGCAAAAATCAAAATTGACGAATTTGAG # Right flank : CACCTCATGCTTGAAGATGGCCGATTGGCTGAAAAAGAAAGTTTCAACATCGAGCCTAACGGATTGATCCCTACAAAATAATTTTTTAAAAATAGAAAGGAAATTTTCTAAAATATTGTTCGAATTGTAACCGCAGGCTCAGGCTTGCGGGCTTTTTTGTTTGCAATAATAAAAGCAGTGACGGAAATCACTGCTTATCAGCTGTAGCAAATTCATAAAGTTTTTCTGCTGTGAGAAGTGCCATTTTGTCCATGCTTGTTTTTCCTTTTCTGAGGTCAGAAACGGTAGTCCATGGCACACCGGCACCTTGTGAAATAGCAGATGTAGAAATAGAACTATTAAGTAATTCTTGAATAACTTTTCTCATATTTTTCTTTACCTCAATTTTTATCTTAATCATATTATATAACGGAGAACCGAGATGTCAAGCGTTTTGATAAATTATTTCTAAATATTTTCGCCCCAAACTTGCCCCCAAAAACTTATTTTTTTATATTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 85485-85191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPI010000004.1 Streptococcus oralis strain J22 Soralis_J22_DanaHsu_Sia_NO_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 85484 35 100.0 29 ................................... AAAACTATATTTAACTATGAACCCGTGGG 85420 35 100.0 30 ................................... TCATGTTCATCAATATCTCAATGGCGGGGA 85355 35 100.0 30 ................................... TGTCTATTTCATGCTAATTGCCAACATAAT 85290 35 100.0 30 ................................... CTCTATCCAATACTCGGTCATACATATACA 85225 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================== ================== 5 35 100.0 30 GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Left flank : GCAATCTCAAAAGAGAAAAAAAATGAAATCATCGCACAATATGCACGTCACGAAGGTGATACAGGTTCAGTAGAGGTTCAAGTTGCTGTCCTTACTTGGGAAATCAACCACCTTAACGAACACATCAAACAACACAAAAAAGACCACGCTACTTACCGTGGATTGATGAAGAAAATCGGTCGCCGTCGTAACTTACTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTAATCAACTCTCTAGGACTTCGTCGCTAATCTGCTTTATTTTCCACTTACATTGCGTTGTCACCTTACCTCGATATACTCAAGTATAATCTTCGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGAATGATCTCCCTTCGGGGAGATTTTTTGTTTCACTAAAATTTTCGTACAATCTTTGGCTTGTCGCCTAGTCTATAAACGTTTTATCCAGCAAGAATAAAGCTCTCTGATTTCAGAGGGCTTTTTTATTGAG # Right flank : CTCAAATAGTATCAGCTAATTACACCATAAAGGTGCGCATCTACTCGGCTTGAAAAGTCGAGTAGCTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATAGAAGTAGTCACCGAATTTCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTGACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //