Array 1 1184-2275 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZZI01000024.1 Neisseria meningitidis strain Neisseria meningitidis isolate R286, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1184 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 1250 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 1316 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 1382 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 1448 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 1514 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 1580 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 1646 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 1712 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 1778 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 1844 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 1910 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 1976 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 2042 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 2108 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 2174 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 2240 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //