Array 1 29858-27893 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETH01000031.1 Salmonella enterica isolate STY110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 29857 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 29796 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 29735 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 29674 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 29613 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 29552 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 29491 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 29429 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 29368 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 29307 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 29246 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 29185 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 29124 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 29063 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 29002 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28941 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 28880 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 28819 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 28758 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 28697 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 28636 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 28574 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 28471 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 28410 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 28349 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 28288 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 28227 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 28166 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 28105 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 28044 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 27983 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27922 29 96.6 0 A............................ | A [27895] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47482-45989 **** Predicted by CRISPRDetect 2.4 *** >NZ_OETH01000031.1 Salmonella enterica isolate STY110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47481 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 47420 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 47359 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 47298 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 47237 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 47176 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 47115 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 47054 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 46993 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 46932 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 46871 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 46810 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 46749 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 46688 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 46627 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 46566 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 46504 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46443 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46382 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46321 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46260 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46199 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46138 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46077 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46016 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //