Array 1 65-391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLBT010000111.1 Micrococcus luteus strain S/N-204-IC-R2 S/N-204-IC-R2_contig_111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 65 36 100.0 34 .................................... TGCGTGTAGGAGCCGCCCAGGTGGCCGGCCAGAA 135 36 100.0 38 .................................... ATTCCGCGCCAGCACTGAGATCGGAGGGGGCCCCCATG 209 36 100.0 40 .................................... GGTGCGCAGTGCGTGGACCCTGCCCTGCATTATGGTGCGA 285 36 100.0 35 .................................... TGGTTGCGGTTGATCCATTCCACGCCTGCCGCCCG 356 36 94.4 0 ......C................G............ | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 98.9 37 GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Left flank : CCTGTGGGGAGCGGACTTCGTTGAGGCGTCGACGGGCGCTTCATGTACGCCGCCGTCTGCTCCGG # Right flank : CGT # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 82-403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLBT010000066.1 Micrococcus luteus strain S/N-204-IC-R2 S/N-204-IC-R2_contig_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 82 37 100.0 36 ..................................... AGGTCGAGGCCCGCGTCGGTGGGGTGTGCCCGGGTC 155 37 100.0 34 ..................................... CCGGGCGGGCCGTCCCGGAAACGAAACATCTCGC 226 37 100.0 35 ..................................... TCACGGAACAGGGCGACGGCGGAGAACCGTTGACC 298 37 97.3 33 .............T....................... GAGGAGTCGGTGGTGCTGATCGGCCCGCCGCGC 368 36 86.5 0 T............T..................-..CT | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 96.8 35 GGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Left flank : CCTATGGGCAGCTTTTCATGGCCGCTTACAGCGGACTTCGTTGAGGCGGGGTGCCCGGCTTCCACGTCATCGTGGACGTCAG # Right flank : TCTCTAGGTGTGATGTCCAGGGAGGTTGTTGAGCCTGGTGGCAGGCGCGGCGCCGATCGCGGAGTGGACGCGATGATGATTGTAGAAGTGCAGCCATCCAGGCAACGCGGCCCTGCGCTCCGTCTCTGAGCTGTAGAACCGGGCGTAGGCCCACCCGTCAGCGAGCGTGCGATGGAACCGCTCAATCTTCCCGTTCGTCTGCGGCCGGTAGGGCCGAGTCCGCTTGGGCTTGATCCCGAGCTCGGTGCAGGCATCACGCCAGGCATGCGAGTGGTAGGCCGAGCCGTTGTCCGAGAGCACCCGCTCCACCTCCACGCCCAGGCGCGCGAAGTGGGCGACCGCGCGGCGCAACACCGCGATGGCCGTCTGGCTGCGTTCATCGGAGTGCATCTCGACATAGGCGAAGCGGGAGTGATCATCGATCACGGTGTGCAGAAAGCCCACCCCGAGCCGGGGCTGGTATCGGGCATCACGGGTTCCTTCGCGGTCCGAGGTCGCCG # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.20,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1756-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLBT010000013.1 Micrococcus luteus strain S/N-204-IC-R2 S/N-204-IC-R2_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1755 36 100.0 36 .................................... CAGGCAGGCCAGACCGGGGAGTTCACCGTCACCGTG 1683 36 100.0 34 .................................... TCCGTGGCGGGACCATGTATGCGATCTGGCGGAC 1613 36 100.0 37 .................................... GCGGCCCACCACGACGCCCTCTACCGTGGCACCCTGA 1540 36 100.0 35 .................................... CGGGGCCGTTCCGTGCTGGGCATCGACCCCGGGTT 1469 36 100.0 35 .................................... GACACAACCCCGCCCGAGGAGACTGCAACCCGCGC 1398 36 100.0 38 .................................... AACAGCTCATCGGTGGCCACGGCGTGCGCGCGGGCCTG 1324 36 100.0 37 .................................... GGTCACGGCAAGGATTTCGCGCGGGGCATCGCGTCCA 1251 36 100.0 35 .................................... CGGATCGCGTCCCCGAGGTCCCGGATGGACTCGCC 1180 36 100.0 36 .................................... TTGCCGATGACCTGGCTGGACACGTCGAGGCCGTCC 1108 36 100.0 35 .................................... GAGCCCGGAGACGTGACGGTGGCGAGGTCGCGGGT 1037 36 100.0 36 .................................... ATGAAGGCCACGGTGCCGCTCATGGTGTCCAACGCG 965 36 100.0 35 .................................... GGGCACACCGCCGTGGTCATCGGCAACCCGTCCGG 894 36 100.0 34 .................................... CAGTCAATCCGCAACCACCAGAAGAAGCACATGC 824 36 100.0 35 .................................... GCACCGGACGCGGTGGTGACCGAGCTCCGGGCCTG 753 36 100.0 39 .................................... TGAACATCGGTGAGGCGGGGGGTGGTGTGTCCGGCACGT 678 36 100.0 35 .................................... GTCACCAGCATCGCCCCGGGTCCCCAGCCGCGCGC 607 36 100.0 34 .................................... CGTCAGCAGCCGTCCGGTGAGCTGGCGCAGGTCA 537 36 100.0 34 .................................... CTGGCCGTCGCCAACGACCCGGACGAGGCCCTCC 467 36 100.0 34 .................................... CAGGGCATCAACCGTGTACTCGCCCCCATGTGGG 397 36 100.0 35 .................................... GGCGACTGGGAGACGAGCGGCAACCGCAACCCTGA 326 36 100.0 34 .................................... CCGGCGCAGTGGTGGTCCGTGCAGGACTACCTCG 256 36 100.0 37 .................................... GTCGACGGGCGCTTCATGTACGCCGCCGTCTGCTCCG 183 36 100.0 40 .................................... GGTGCGCAGTGCGTGGACCCTGCCCTGCATTATGGTGCGA 107 36 100.0 35 .................................... TGGTTGCGGTTGATCCATTCCACGCCTGCCGCCCG 36 36 94.4 0 ......C................G............ | ========== ====== ====== ====== ==================================== ======================================== ================== 25 36 99.8 36 GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Left flank : GTTGAGTGCCCGGGATCGTCTCCGGAGGAGGCTCATCGCCTATGACATTCCTGACGACCGCCGCAGATCCCGGGCGGCCCGCGTCCTCGAAGGGTTCGGAGATCGAGTCCAATATTCAGTCTTCGTGGTGGATGCCTTGCCCGCCCAGTTCGTCTCCCTGCAAGCAGCCCTCGAAGCGGTGCTGGATCCGGGCGAGGACAGCGTGCTGGTCTGCGACCTCGGCCTGACGGCCACGCTTGGCGCAGAGCAGTTCAGCTTTCTGGGTCGATCACGCGAGATCTCTGTGGATGGGCCCATCATCATCTGAAGCGAGCCAGGGACCTTCGCGAAGGCTCCGTCGATGTCCGGAATCCGGCGAGCCGTCGCATCAGAAAAGGGCTTGTCAGCCCACGGTTCATGGGTCGAGGCCGATAAGCATGGCGCTCCACGGACGCCTCTTGAGCCCAGGGCTCGCCGACGGTCGCGTCTGCCCATGTCAAAGGGCTGTAATCTGAGGTGCT # Right flank : C # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGCTCCTGTGGGGAGCGGACTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //