Array 1 880512-880277 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912979.1 Enterococcus faecalis EnGen0406 adiFQ-supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 880511 37 97.3 29 ....................................C ACTTCCCAAATAGAAAGGACGATGAAACA 880445 37 94.6 29 ...................C................C TAATGTCAAAACAGCAGCTACATTTCTCC 880379 37 100.0 29 ..................................... GGGTTGACTAAAGAGCCGTCAAAAGTTTT 880313 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 98.0 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : TGTATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGTCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTTGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAATTCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : CAAGAAATTGCATTAAGTTCAAAAAATTTGTTTTAGAGCCATGTTGTTAAAAAACAAACTATCACCACAAGCAATCCGTAATTTTTATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 324296-324464 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912980.1 Enterococcus faecalis EnGen0406 adiFQ-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 324296 37 100.0 29 ..................................... TGGCTTGTTGTTACGTGTATTACAGACGG 324362 37 100.0 29 ..................................... GCACACACACGCTACTCACAGGCATTATA 324428 37 67.6 0 ..................GA...GC.ACA.TT..CTA | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 89.2 30 GGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC # Left flank : AGCACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTACTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGA # Right flank : AGACAGAAAAATTAAGGTGTGTAGACTAGAAGAAAACATACCAGGAGGAATTTTTATGTCTAAGAGAACACGAAGAACTTTTTCACAAGAATTCAAGCAACAAATCGTCAATCTTTACTTAGCTGGAAAGCCACGTGTAGAAATCATTCGAGAATATGAACTAACGGCTTCAGCATTTGACAAATGGGTAAAGCAATTTAAAACGAGTGGTTCATTCAAAGAAAAAGATAATCTTACGCCTGAACAAAAAGAATTGTTAGAACTACGTAAAAGAAACCAGCAATTAGAAATGGAAAATGATATTTTAAAGCAAGCAGCGCTGATATTCGGACGAAGAGACAAGTAATCGATGCGAATAAGCATCTTTACCCTATATCAGCGATGTGCAGAATATTAGGTCTATCACGTCAGTCCTATTATTATCAATCAAAACCAAAGAAAGACGAATCAGAACTTGAAGAAGTAGTCGCTGAAGAATTTATCCGCAGCCGAAAGGCCTA # Questionable array : NO Score: 4.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: F [matched GGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 325796-326362 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI912980.1 Enterococcus faecalis EnGen0406 adiFQ-supercont1.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 325796 36 89.2 29 C.G..-..T............................ TTTTCATTTAAGTAGTGCGCTTGATATGC CC,C [325802,325807] 325864 37 100.0 29 ..................................... CGAGAAAAAACGTATGGTGGAAATTGTTG 325930 37 97.3 29 ....................................T AAAGCAGCTTCTAAAACAGAAGGTGAAAT 325996 37 100.0 29 ..................................... ATTGGTAAGATTACATGACCTTTAGTACG 326062 37 97.3 29 ....................................A AAGAAATGGACACATTACACAACGCTTTC 326128 37 100.0 29 ..................................... TGCAACAAAAGAATATTGTTGTCAATGGT 326194 37 97.3 29 ....................................A TCAGTTGTCGGGAAATTGCCGGAGCGTGG 326260 37 97.3 29 ....................................T GGGGCTAAAGGTGTAGCACATCAAGTTTC 326326 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 9 37 97.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : AAGCATTTAGCCGTATCAAACAACCTCTGACAGAGGTTGAGATTTTTCATACTGATCGTGGAAAAGAGTTTGATAACCAAGCTATTGATGAATTATTAACAACTTTTGACATCAATCGATCATTGAGTCATAAAGGCTGTCCTTTTGATAATGCCGTAGCTGAATCAACTTATAAGTCGTTGAAAGTAGAATTTGTCTATCAATACACATTTGAAACCTTACAACAATTGGATTTGGAGTTATTTGACTATGTCAATTGGTGGAACCACCTTCGGTTGCACGGTACACTTGGCTACGAGACACCGGTTGGTTACCGTAACCAGAGATTGGCGCAGCGAATCCTTGATAATGAGCTCGGATGTGCTAACGCTAGCGAGGCAGTCTAACTTTAACTGTTAGCTCCTGCCGAAGATCGTCACATCCGAGGAGGCTCATTGTCAAGGACAATCGGAATAGCATACGGAAAGAAGTTCTGCACCTTATAAAATTTGTCAAAAAAA # Right flank : CAATGTAAATGCTCATTATGATTTACATATGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATATGGTTATTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAAAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGCCCCAATTAAAGTCAAGTTAACCACATTGAAAGATAGAACTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAAAGCGGATTAATTTCCTATGCTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //