Array 1 162014-160049 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEAL01000007.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain N17-0346 N17_0346_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162013 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 161952 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 161891 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 161830 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 161769 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 161708 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 161647 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 161585 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 161524 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 161463 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161402 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161341 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161280 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161219 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161158 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161097 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161036 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 160975 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 160914 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 160853 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 160792 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 160730 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 160627 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 160566 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 160505 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160444 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 160383 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160322 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160261 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160200 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160139 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160078 29 96.6 0 A............................ | A [160051] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179638-178145 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEAL01000007.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain N17-0346 N17_0346_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179637 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179576 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179515 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179454 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179393 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179332 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179271 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179210 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179149 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179088 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179027 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 178966 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 178905 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 178844 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 178783 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 178722 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178660 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178599 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178538 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178477 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178416 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178355 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178294 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178233 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178172 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //