Array 1 961-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXUD01000063.1 Salinivibrio sp. HTSP NODE_143_length_97719_cov_23.288286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 960 28 100.0 32 ............................ TTTTAAATTAAAACCCGCCTAGCATTGACGGG 900 28 100.0 32 ............................ GCTTGTTGGTCTTGGGCGATGATCCCGCATTT 840 28 100.0 32 ............................ TCTGTTTTATTCATGAAGCTATTGTACTGCCT 780 28 100.0 32 ............................ TAAAAAAGTCGAGTCGCCACAACTCGGCTTTT 720 28 100.0 32 ............................ TTACACTCCGTCAGCTTCTGCGATGAAAGAGC 660 28 100.0 32 ............................ TGCTCTAACGCCTCATCGCGAGCACGCTGGAT 600 28 100.0 32 ............................ TTTCTGGCTGCCGAGTAGAAATATCTTTCCCA 540 28 100.0 32 ............................ TCTCACTTGACTCCCCCCAAGTATGCATTTGG 480 28 100.0 32 ............................ TGACGATACATTCCAGTTGCTTATATCTTGAT 420 28 100.0 32 ............................ AGCCACTAATATCTTGATTAAAAGAACTATCG 360 28 100.0 32 ............................ GCGATCTCTGACTGTTTTTGCGTCCTCAAGTC 300 28 100.0 32 ............................ TGGCGCTCGAAACCGTGTCACAAGAACTTGGC 240 28 100.0 32 ............................ CAGAAGTTTTGCTCTTACTAAACTTGCCGAGA 180 28 100.0 32 ............................ ATACGCCAAGGTACACTACTTTAATAGTGTAC 120 28 100.0 32 ............................ TCGCCCGCCGGTTGTTGGCTCGTAGTTAATGC 60 28 85.7 0 .....................G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCGCGCCATACTTTGAAGCTCCGCGGTTTTAATTCACGTCGCATTAACGCAATCACATCGTCTTGGCGTAGGCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATCTCGGTCTCCTTGTGCTGGTGGCCAATAATACGCGTAGAGCAGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGTTACCCTTGTTTTTGGGATATTTAAAAATAAACAATAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGGGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTCACTGACAATTATTACGTTATTCTATA # Right flank : GACACAAGCCCCAGCACGATGTTGGATAGGGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1369-81 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXUD01000069.1 Salinivibrio sp. HTSP NODE_160_length_11239_cov_22.665895, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1368 28 100.0 32 ............................ AACAAAGGCAAGCAGTGCTAGAATGAACATCT 1308 28 100.0 32 ............................ TCGCGCTCAAAGCGCAAAACTGGCGAATAGGC 1248 28 100.0 32 ............................ GAGACCAACATGCCAGAACGAAACTTAGATCC 1188 28 100.0 32 ............................ AAATGGATCGCGCTTTGGTTCGTGGTCGTAAG 1128 28 100.0 32 ............................ TTCATCAGTGCTAACGACCAATGATAACACCA 1068 28 100.0 32 ............................ TTAAAAAAGAGCCTTTGCGGCTCTTTTTCTTA 1008 28 100.0 32 ............................ GGTAAATTGCAGGCTCGCCGCGTCCACATCAA 948 28 100.0 32 ............................ TCGTTTTACGATCGTTGGCATAACCTGACATT 888 28 100.0 32 ............................ TTTTTGCCCCGCTATTCCAACTGCTTTTAAAC 828 28 100.0 32 ............................ TTGGTGGCTGTTTCTTGGCTTGATTCGGTTGG 768 28 100.0 32 ............................ AAAAAAGCGATGACAATAGGTGCAAGCAAGAA 708 28 100.0 32 ............................ ATTTTGCCTATCTCGGCAATATGGCGTTGCCA 648 28 100.0 32 ............................ TCAAGCTTGGCCTGATACTCAGATAGCTGCTT 588 28 100.0 32 ............................ CAGCAGTAGTTATAAAATAAGTGTATCTCTAT 528 28 100.0 32 ............................ TCTTAGCTATTTAACAATTGTTTGAAAAGCTC 468 28 100.0 32 ............................ TTTCTTAGTTGAAGAAGAGCAATAAAGCTCCA 408 28 100.0 32 ............................ ACGATAAAAAATATCAGGGCGTGAATATACTT 348 28 100.0 32 ............................ GCTAGACAAAAACGGCGAGGTGCATGTGGAAT 288 28 100.0 32 ............................ ATCAGCTGCTGCCAGTCCTTGTATGTGGACGT 228 28 100.0 32 ............................ ATGACGCCGAATTTTTGCAAACGTCTGATGAA 168 28 89.3 32 .........................GTG GCAGAAAGATGCTCGAAGTTAGCTGGCGAAAG 108 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGTGCAAGACTATGCCTACTTTAAACGTTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGATCGGCGCGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGCGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCGCTGCCTTTTATTCAAGTCACCAGCCTGTCGAGCCAAAAACGAGCAGGGCGTACGGAAGAGTTTGCTTTGTATATCGAGCGGGAGACTACCAAGCAGCCGCCAAACAAGGAACAACCGTTCACCTGTTATGGGCTCAGCCGACGAGAACCCGATCAGCAATCAGCGGTACCGTGTTTTTGAGGGGGAAACCCCTCTTTACCCCTTCTTTTTGGGCTCTTTAAAAATAGAGAGGAAATACAGTTAGTTACGGCAGGCCATTTTTAACAAGGGTAAAAGACGATTTTTATCCTAATGGCCTGTTGTACCTGACGATTATTACGTTATTCTATT # Right flank : GACACAAGCGCCGCTACGGTGTTGGATATGTGAAAATTGCCAACGGGCGCCTGTCACGATCGAGGTCAATCGTTGGCCTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1899-2588 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXUD01000081.1 Salinivibrio sp. HTSP NODE_203_length_2560_cov_27.258984, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1899 28 100.0 33 ............................ CTTCATCAGTTGGCTTAATCATACCGCCCAATA 1960 28 100.0 33 ............................ CAGTAAATTGTGGCTCGTGAGCGCCAGCGAAGA 2021 28 100.0 32 ............................ AACATAACTTGTCTAGACGGGCACGGATTTTG 2081 28 100.0 32 ............................ ATAAATATTATGATAATTATTCATTTTTTAAA 2141 28 100.0 32 ............................ AATGAAAATCGCAATTGCCTACGTAGGTCCCA 2201 28 100.0 32 ............................ TATTTGCCAAGTCCGCACCGCCAGTTCTTTGT 2261 28 100.0 32 ............................ TCAAACGTTTGACTTTCTCGCTCCGATCTATG 2321 28 100.0 32 ............................ CCGACTTGCAGCAGGAGTGGCGACCTGTGTAG 2381 28 100.0 32 ............................ AGTGGCGTGACGATGAGTAAAGCCCAGCGCGA 2441 28 100.0 32 ............................ GTGAGGCACTGGCGGCACGAAGAGAAAAGGGT 2501 28 100.0 32 ............................ CATCACATCGCTGGCCATAATAAAAAACTGGT 2561 28 85.7 0 .....................G...GTG | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAAAACTGGACGCTCTGTTACCCCGACCGCATGTTGCCGCGTTTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGTAAGCGTTGGTATGACATTAGTTTGAGCCACTTCGAACGTTGGTCGCAAGATGCAGGTGTGCCGTGGCAAATGATCAAACCGCATCTGTTGGATACGATCAACTTGGCGAGAGATATCTGGCCAAATCAACTTGCGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTACGTAATCATTGGAAAGCCCTGCACAAGGACTTCACCATCGATTCGTAACCCAACGGAGAACTAAGCCGGCATCTTTTTATCCTTATTTTTTGGCTATTTAAAAATAATTAATAAATACAAAGCGTTACGGAAAGCGATTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACGGCCTGTTGTCACTGACGATTATTAAGTTATTCTAT # Right flank : ACACAAGCCCCAGCACGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 39737-38760 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXUD01000046.1 Salinivibrio sp. HTSP NODE_92_length_39697_cov_25.613623, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 39736 38 100.0 34 ...................................... AGATCTATAATCATGCTAATGAACTCTTACTTTC 39664 38 100.0 34 ...................................... CAAACAACCGTGGGGAAATGACGGCTATTATACG 39592 38 100.0 35 ...................................... GGTTGTTGTGGTTGTGCGCCGGATAAAATCTGCTG 39519 38 100.0 34 ...................................... ATCATGAGGTTAAAATGATCCATATAATCTTTTT 39447 38 100.0 34 ...................................... CGTAGGTACAATATACCCATGCACAAAGATATCT 39375 38 94.7 35 ..............T........T.............. GTTGTGTTGCTGATTACCGATCATAACGGCCCCAG 39302 38 97.4 34 .......................T.............. ATAGGAACCTCCTTCCTCTGATGGAATGAATGAG 39230 38 97.4 34 .......................T.............. GCTCTTTACAACGACGAATTGGCGACGCTCAATG 39158 38 97.4 35 .......................C.............. ATAAATTTCCATCTTGTGGCAATCGCATGACATGT 39085 38 94.7 35 ..............T........T.............. ACCGCCGAGAAATTCAAACCGCCCGTCAGCTTTGG 39012 38 92.1 34 .................................G.T.G GTAGGGCCTAGGACCTAGATTCCTAGGCCCTAGG 38940 36 81.6 35 ...T.T.T.T--...........T.............. GGCCGCTTCCGCAAATCGCTCATCAATGGACTTAT 38869 38 97.4 34 ..............T....................... GCTTTTTTGATCACATCAATCAATGACACTGCAA 38797 38 86.8 0 ..............T........T.........G.T.G | ========== ====== ====== ====== ====================================== =================================== ================== 14 38 95.7 34 GTCCTCACGGACCACGCCCTGACGAAAGGGATTAAGAC # Left flank : AACATG # Right flank : GTAGTGCCTAGGTCCTAGAATCCTAGGCGCGAGGATCGTTAGCGATAAAAAAGGCCACATGGTAAACCATGTGGCCTTTTGCGTGTTCCCGTCGGCTAAATCGTCTAACGGGTCGCGTTTTTATACTGAATATTATCAGGCGCAATCGTTAGGCCTTTATACACATAACCCGCTCTGTTGACTTTCCGCTTGTGCACATTATTAATGGTATAGTACTGGCCTAATTTCTTACCCAGCTTGTCGGTGATTTGCTTGTTGGTCTCTTTTAACAAGCGATTCCATAAATTTTTGTGCCGTTTTCTCAGCTCATCAAGCGGTCGCTCTAAGTCGCTGTTGAACAGAATGTCTGTATCTTTTCCATCGCCTTGGAACAACCAACGCTTGCGGGCAACGCCCGAATCCGTGTCATGTTTAACGATTTCCTCCGCGGTTTCTTCGGCGAGCTCTACCCACCTCACCAGATCCCAATCGTCGCGCTCGCTTGGCAATGCGGCACTATC # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACGGACCACGCCCTGACGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 1279-2042 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXUD01000022.1 Salinivibrio sp. HTSP NODE_45_length_9888_cov_36.251213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 1279 38 100.0 34 ...................................... GTTCAGTGACAGTGACATCCAAAGTTAGATCAAC 1351 38 100.0 34 ...................................... TAGCGTTAGACAAACGTTACTTAACAAAGGTTAC 1423 38 100.0 36 ...................................... CTCAAAAGTATCAGGAAACATAATGTTTTCTACATG 1497 38 100.0 36 ...................................... AAAAACCTGTACGACGAAAATGCACTAGACGACATG 1571 38 100.0 35 ...................................... TGAAGCGTCGTGGTTTTCAGTGAACGAAGTGTCAT 1644 38 100.0 34 ...................................... TTAAGAGTCCAAGCTGATTAACGCAAACGCGTCA 1716 38 100.0 35 ...................................... TTATAATCGTGATAATTTACCACAAGGGCCACATT 1789 38 100.0 35 ...................................... CGTATCGGATCGGTCGTCACGGGTAATCCATTTTC 1862 38 100.0 34 ...................................... CGATGCGGTCGCTCACCAGCATCAAGGCATCTTT 1934 38 100.0 34 ...................................... CGATAGCAGTAGTCTCGCATCTCTTCCAGCTTAC 2006 37 84.2 0 ..............T........G.......-..G.TA | ========== ====== ====== ====== ====================================== ==================================== ================== 11 38 98.6 35 GTCCTCACGGACCACGCCCTGACTAAAGGGATTAAGAC # Left flank : AGCTGCACGATTTTTATGTGGCTAATGGCTTTCAGCTTGTCGAGTCACATGCCTCTTGGCTACGCATTCATGAACATACCAACTATGGCGTAGCGGTCGAGTATGTCGATGAATTGTATGTAAAACCGATGAAAGACAAATCATGGCCAGCAGGGCATATGGATTGGCTTGGGTATATGTATTAATACCCTCGGTAGACGTGGTTTATGGCGTGTAAGAGGGGTGAGACGGCTTTAGCTGAGCGCCTGCAGCTATCTGCAGGCGCGTGATGATATCGGCGACTAAACGCCCTTGCTATTGCATCACTGCAAACGACTCATAAGGGGCTAGTGTGTAGGGAGGGGGGAATTAAAATAAGATAATAGGTAATTCATGTGCTTACGGAGGATAGATGAAAAAGGGCATACAGATTGCATAATTTTCTGAAATTAAGGGTGTTTAAAACGCCTGTTTATTTTGCAACTTGCAAAATTAAAAACAATCAGTTATAAATTGAAATA # Right flank : AGTGCCTAGGTCCTAGACTCCTAGGCCCTTGATTTCACCCCCTGACAAAAGCATCCCGCTTCATCATCACGTCCCCCCGCTTCATCGCTTCCCATACGCAACACTTGTTCACCAATTGGTCATCCCGCCTATTTTGCATCGCACTCTGTAACCTAAGCATGGTTTTACAGCACAGGGGCGAGCCATGCAGACACAAACCATCACCGTCACCACCGCCAGCCAAATGCAAGACTATGCCGATCAAGTCTGGGCGTTGTTGGTGGCCAGTTATGCCCATGTGAAAGGTGGTCTGCATTACACCAATAAGCCGCACATGCTGGCACAAACCCAGCGCTGGCAATTGGTTGTGCGTGGCAAGCGGGTGATCGCCGCGATTTTATTTAAAGCCAAACGTGGCTGGAAATTAGTGGCAATGGCCGCGTGTCGTCGTGCTAAATCGGCCGCGCGTGCCGCGCTAAAACGACTCATTTGTGGCGCCCTCCCCAATAGTTGGATGGAGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACGGACCACGCCCTGACTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 5265-6311 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXUD01000022.1 Salinivibrio sp. HTSP NODE_45_length_9888_cov_36.251213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 5265 38 100.0 34 ...................................... GTTTTTCTCGGTAGAAACGTTTGGTAAAGTAGGT 5337 38 100.0 34 ...................................... CAGACATCTGCGGTATTTGGAACATCGCGTTTGA 5409 38 100.0 34 ...................................... GTTCTAATTCATCATCATCATCCAACTGGGTATC 5481 38 100.0 34 ...................................... TGAATTTTGGATTCTCACACAGTATCTCCAATAG 5553 38 100.0 34 ...................................... TAAGTCATCGTTAACCGCTACTAAGTGACCATGG 5625 38 100.0 34 ...................................... ACGCCAGCACGCACAAAGCCTTGAGTGGTTTTTT 5697 38 100.0 35 ...................................... TCCTTCCTCTAGTGGAATTAGTGAATGAAATGAAT 5770 38 100.0 35 ...................................... TTTGTTAGACTTGCTAACATCTATCATTCCATAAG 5843 38 100.0 34 ...................................... TCGCTGCTATATTTCAACTTGCCGCCTCGCTTTG 5915 38 100.0 34 ...................................... CTAGATCCCCTAATGCTGATTCGCTTTCACCGCT 5987 38 100.0 34 ...................................... TATTCATTTTCGCTTGGACAGACAATGGATTATC 6059 38 94.7 33 .......C......C....................... GCGTCAACGACCACAATTTTCTCGATTTCATTA 6130 38 97.4 34 .......C.............................. CGAATTTGCTTTTTCTTCTTACGAACTTCCCAAG 6202 38 94.7 34 .......C......C....................... CTGCAATCCCTGAAAAAGGTCTCGTTTAGATACT 6274 38 84.2 0 .......C......C........G.........G.T.G | ========== ====== ====== ====== ====================================== =================================== ================== 15 38 98.1 34 GTCCTCATGGACCATGCCCTGACTAAAGGGATTAAGAC # Left flank : GGATTTATGTGGGGAATGACCAGATTGTCCATTTAAATGGCGACGGTCGAGTCGAAGCCGTGTCGCCGGCGCGTTTTCTACAACGCCTGGGTGGCTTTAACCCGGCGATCAGTATTTATGTTTCATGCCGCGATAAGCAAGCCGTCGGCTCACCGGCGGCCGCCGCGCGGGCGATGCAGGAGATAGGCAAGCGTCAAGACTACAATGTGCTGTTTGACAACTGTCATCAATTTTCGTCATGGTGTTTGTCGGATAACCGTGCAAACAGTGACAGTTTTACCTGGATGCTAAAAGACACCGCCAAGGCGCATTTGCACGCCAATACTTGGCGCGTGTGGGATTGGGAAGATTAAAATAAATCAATAAGCCGCTCAGCCGCTTACGCGCGGGAATAAAAAATGGCACGTCATTTGCGTATTTTGTTAAAATTAAGCGTGTTTAAAACGCTTGTTTATTTTGCAACTTGCAAAATTAAAAACAATCAGTTATAAATTGAAATA # Right flank : GGAGTGCCTAGGTCCTAGAACCCTAGGCCCTAGGATCTTGATTTCACGCCCTGCCGACAGCGAACCTCCTTGTGCTTGATTTTTCTGCCATCACCAATTGGTGATCCGTGCGCTGGCGTCGAATAATCGATAAGATTATCCTCATCACTTGCCCGCGATACTGGGCAGCGTTTAGCGACCCATTACCCCAGCCCCATAAGGAGATGCCATGCAACACGTCCATATCAATCTGGTCTCGAACCAACTGCTCCCGAATCTTATTCCCGCACTGGGCGACAACGCCTGCACGCATGTGATCCTGGTGCTTGGCGATCACACGCTCAAAGCGCGCGCCGAGGCGTTAGCCGATATGTATCGTGATCGCGATATTGAAGTGACACTCTTTGAAGGCCGGAGTAGTCATGATGTGGCGGCGCTGAAACAACAAGCGCGCGAGGTGATCGATCGTCTCAGCACCGAGTTTGCGGATATGCGCTGGATATTGAATGCCACCGGCGGCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATGGACCATGCCCTGACTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 9455-9927 **** Predicted by CRISPRDetect 2.4 *** >NZ_PXUD01000022.1 Salinivibrio sp. HTSP NODE_45_length_9888_cov_36.251213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 9455 38 100.0 35 ...................................... CCGACGTCTTTACCCAAACCCGTTTCTTCAATCAG 9528 38 100.0 35 ...................................... TTAAGTGTTTGAAGTCTGAGCTGTTGCGTTTAGAC 9601 38 100.0 35 ...................................... TTTTGGTGTTGGCGCAATACGATATAGGGAAATCC 9674 38 100.0 34 ...................................... CGGCGTGTTGAAGCAGTAAACTATTACGGTGGGG 9746 38 100.0 34 ...................................... GTTAGGCACCTCTTTCCACTCCTTGCCATTCTTG 9818 38 100.0 34 ...................................... TTTAGCGGGGTCCGGATCGCGTAAGTGTACCTTG 9890 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 7 38 100.0 35 GTCCTCACGGACCACGCCCTGACGAAAGGGATTAAGAC # Left flank : ACAATTTTACCCCAAGTGGTTTGCGTGGCAAAAAAAGCGGCGTCCAGCATTACGTCGGTTGGCGCGTCTTTGTCGTTATGCTATGGAGAGGGCGTAATTTATGGATAAACCCCTATGGCTAATCAGCTACGATGTGAGCCACCCCAAGCGGCTACGGCGTATTTATCAATATTGCAGCCAGAACGGTTGGCCGTTACAAAAGTCCGTGTTTGTGTTTGCGCTCAATAAAGCGGAAAAAGCACAGGCTTGTCAGGAGCTTATTGACTTGCTTGACAGTGATGAAGATAAGCTATTGTGTATTCCGTTTAATCCCACCGCGGGCAGCTTTCATCTGATGCCGCCCACTGACCTGGTGATTGCCCATGATGATCCCCGCTTAACTCGGTTCGTTCAATAACACGGCATGGGAATTGCTTGATTTTAAAAGTTATCCACTGTTTAAAACGCCTGTTTATTTTGCGACTTGCAAAGGTAAAAACAATCAGTTATAAATAGAAATA # Right flank : ATCTCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACGGACCACGCCCTGACGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //