Array 1 37597-37984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDRV010000033.1 Pseudomonas aeruginosa strain M0068 M0068pairedtrimmed_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37597 28 100.0 32 ............................ GCTGGCCGAGACCGACAAGTCGAAGCGCACGG 37657 28 100.0 32 ............................ TGTTCGTAGCCGATATCGCTGCACGCGATGCA 37717 28 100.0 32 ............................ GAGGGGCCGTATCGACGGTGATTGATGCGACA 37777 28 100.0 32 ............................ AGCAAGGCATCCGGAAACGGGCCTTGGGTCAC 37837 28 100.0 32 ............................ AAGGAGCACCACGACATGGTCAGAGCAAACCC 37897 28 100.0 32 ............................ TCCTAGTTCTTCGCCAAGCCGGAAACCGAGGC 37957 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : GTAGGAACGCCATCCACTCGAGGTCATGGCGCGTTCACTGTGTAGTGGTCTACTGATCCCGGACACCGATTTAGGCGAGAATCCTCGCCGTGAGAGAGGTGTCTGATGAGCAAGCAACGACGTACGTTTTCCGCCGAGTTCAAACGAGAGGCTGCCGCCCTGGTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27235-28642 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDRV010000035.1 Pseudomonas aeruginosa strain M0068 M0068pairedtrimmed_contig_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27235 28 100.0 32 ............................ ATCAGTCGATCCGATCCAGCGTGCCGTTGAGC 27295 28 100.0 32 ............................ TGCCACCCTGTCCGCCGTCGCAGTATCCGTAC 27355 28 100.0 32 ............................ ATGTCCCAGAGCTTGCCAAGCTGCTGGGCCGC 27415 28 100.0 32 ............................ TCGTCGTTGATGCTTTTCAATATCTTTGATGC 27475 28 100.0 32 ............................ GATCGACCTGGTGCATACGCTCCGCCTCGATG 27535 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 27595 28 100.0 32 ............................ TCTGCGGACGCCAGGCGCCCGGCCAACACGCC 27655 28 100.0 32 ............................ ATCACGAAAACGCGGCGGCCGTACCGGTTGCC 27715 28 100.0 32 ............................ ACATGCCGATCCTGCTTAAGCGACGGGATAAT 27775 28 100.0 32 ............................ AGCACCAGGACCGAACCAGGCGGCGCAAAGTC 27835 28 100.0 32 ............................ CGTCCTGGACTACGAGCACCAGACCCTAAAGA 27895 28 100.0 32 ............................ TCGACAAATATCCTGCAAAGCGAATCAGCCGT 27955 28 100.0 32 ............................ ACAACAGCCGTTCGTCGGAGTTGACCATGCGT 28015 28 100.0 32 ............................ TCGGATTGGAGCGAGTTGGAGAAGCTACAGAC 28075 28 100.0 32 ............................ TCTCCGCCCCAGCTATTGCCGGGGAGGGCATG 28135 28 100.0 32 ............................ ATAAAGCACTTCCACGCCGCGCTTGATGCTCT 28195 28 100.0 32 ............................ ACCGCCGGCCAGCACACCCCTTGGTCGTTCGC 28255 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 28315 28 100.0 32 ............................ AATATGAACATTAGGTACATATCAGGCGGGAA 28375 28 100.0 32 ............................ TTCACGTTGGGCGTAGGACAGCGCGTCCTGCC 28435 28 100.0 32 ............................ AACAGCATGGCGTCCACCCGTACCGCCCTCAT 28495 28 100.0 32 ............................ TACCGTGGCGACGTTGCAACCCGCTGGTCCGA 28555 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 28615 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCTTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //