Array 1 829-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALNA010000066.1 Clostridium perfringens strain CP-13 66, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================== ================== 828 30 93.3 35 AA............................ GAAATTAGAGATGCTGGTGAGCATATCTTAGTTCA 763 30 100.0 36 .............................. CTATGAATTAGCAGAACCAGTTGAAACACCTTTAGA 697 30 100.0 36 .............................. TACAGGCGATAGATTAAATATGAAAACTGTTTTTAT 631 30 100.0 35 .............................. GGACAAGAAGTTGAAGGTGCCAGCTTAAAAGAAAA 566 30 100.0 36 .............................. ATTATCTTATCTTATTCTTAAGAATATGGGATTATC 500 30 100.0 34 .............................. TAATTGCATATCTTTAGGATTATAACTTATGTCT 436 30 100.0 34 .............................. ATAAAGGTTATGCTAAATTTGCTAATTTAATATG 372 30 100.0 35 .............................. ATGAAACTCTAAAGATTAAATAAGGAGGGAAAGTG 307 30 100.0 223 .............................. CCTTGTAAAATAGCCATTTTAACTTATTAGATTTTTATGAAAACCTAGTTATTTCAATAAGTATATCATAATTTTACCAGTATTTCACGCTTTTTCAAAGTACTAAAATGAAATAATCTTTAAATCCTCTTATTTCAATGCTTAGATCATATTCTCACTATCTTTTTTACTGGTAAAATAATTAATACTAGAGCACTTAAATTTCATAATAATATTTAATTTC 54 30 73.3 0 C.A.T....G....T..T.....A....C. | C [43] ========== ====== ====== ====== ============================== =============================================================================================================================================================================================================================== ================== 10 30 96.7 56 GTTTAAATACATACCATGTTAATGTTCAAC # Left flank : ATTAAAAGCTCTAAGCCTGGATAGTCCTTTAAAATATTAAAACTTAAGCTTTTTATGAACTCCAAAGACTCCTCCTTGCTTTCAAAATAATAAATAGTTTTTCCTCCACCTCTTGTTATAAAATTTTCTTCCTTTAAGCCTTTATTATAATAATCCTCTGAAAAATCCTTAATAATAAGTGAAGCTCCTATAGCATCCTTAAGCTTATTGCTATTAAAAATGTATGTTTGCTTTTTACCTAACTCCCATAAAACTAAACTCCCCAAGGTGCGACACCTTCCTTCCATTTTTTGCTTGCAATAGTATTTTACCACAAATTATTATTATTAATAAATAATACTTTTTTAAACATATTTTAACAAATTAAAAAAATATCAGATAATCCTGTATAAACAAAATTATCTGATAAAAAAGGATATATGGATTTTTAACTTAACTTTAAGTAGATTTTAATATAGAAATTCTTAGATATATGATCTATTAATCTTCAAAAATAAAAA # Right flank : CCCAAAGTATCTCACTATAAGTTA # Questionable array : NO Score: 3.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-2.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATACATACCATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 53-608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALNA010000088.1 Clostridium perfringens strain CP-13 88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 53 30 100.0 35 .............................. ATTTATGTAGATCCATATGATCCAAATATAACTGC 118 30 100.0 36 .............................. TAGCAGAAAATATAAAAAAGCTAAGCATGGTACATC 184 30 100.0 37 .............................. TACCATATAAACAAGATAAAAAAGATATTTTAATCAA 251 30 100.0 35 .............................. ATTTCAAAACCAAATGGCTCAGGCTCAACTAATGT 316 30 100.0 36 .............................. TGGAATAATTCTTGTTACAATTTTTCTTTTGTCTTT 382 30 100.0 35 .............................. GGTGAAAGCTTTATCAACCCTACTTATGTTGTCAA 447 30 100.0 36 .............................. TGTTAAAAGCTTATTTGAAAATTCTTATTTTAACCT 513 30 100.0 36 .............................. TGGATTAGAAGATATAAAAAAGAATGAAATAGGATT 579 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTTAAATACATTATATGTTAATGTTCAAC # Left flank : ATATGTTAATGTTCAACGCTTGATTGGAAATAGCCTCTTTAATTTCATACTGG # Right flank : CACTTGTAAAATAGCCATTTTAATTTATTAGATTCTTATGAAAACCTGTCTATTTCAAGAGGTACATTATAATTTTACCAGTGTTTCACACTTTTTTAAAGTACTTAAACAAAACTTGTCTTAATCTCTCTTATTTCAATACTTAGATAATATTCTCAACATCTTTTTTACTGGTAAAATAGTTAACTCTAAATTACTTAAAATTTCATAATAATATTTAAGTTCTTATTGATAAACTACTCTTTTATATTCAATCCCAAGCATCACATTACAAGTTATAGCTTAAACAGTTTAAATACATATTATGTTAATGTTAAACCACTGTAAAATAGCCATTTTAATTTTACCAATATTTATCTTTTTTAAATTTTTTAGTTAATTTTATTAATTAAGTTATAAAAAATAGATAGACCTTAAAATGTGATCTACCTATTTTTCTTTTATTTTTAAATTTATAATGTACTAAAACTATGAAGATAAATTTTGGCAACTTTTTAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATACATTATATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //