Array 1 59578-64272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQBR01000007.1 Pediococcus cellicola strain DSM 17757 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 59578 32 100.0 33 ................................ CGATTATTGCATTGTCACAACTTAATCGTGGCG 59643 32 100.0 35 ................................ CGAAAGCAGGCTACTATGCTCGTTTAGGAGCTGAT 59710 32 100.0 34 ................................ ACAACAGCAAAGCGAGTTATTAAAAACTCTGATT 59776 32 100.0 33 ................................ CTTTCATCCGTGGAAGAGGGCTAGAACAAGTAC 59841 32 100.0 35 ................................ AACGTCAGTCGCTAGTACCGCACCAATTGGTAACC 59908 32 100.0 35 ................................ AAACAATCAGGAAAACTCATTCGAGGCAATTCCAA 59975 32 100.0 34 ................................ GCTACATGAAGCGTGCTTATGGGTCTGGTGCAAG 60041 32 100.0 35 ................................ TATGAACCCGAATGCTGACCAATTTGGTGGTAGGA 60108 32 100.0 35 ................................ AGTGGGTTACAGCTAGGTGGTATTGGAATTATTGC 60175 32 100.0 34 ................................ ATGCGATTGGAACTATTCAGACTGGTAATATCGC 60241 32 100.0 34 ................................ CTTGAAGGTTCCATTACCTCCAAATCAATTGAAA 60307 32 100.0 34 ................................ AAGTGCAGCTGATAATGCTGACAGTGCAGCAGTT 60373 32 100.0 34 ................................ ACCAGATTACGTGTTCAAAGGCAATTGGGCTAAT 60439 32 100.0 34 ................................ AATCCAGCCCATGTTGGCCTGCTCAATTGCATTG 60505 32 100.0 35 ................................ AGTAATGCTTAAAATTACTGGATCATTGCAAGACC 60572 32 100.0 34 ................................ CCTGATACTTAGACCAGTCTGGCCCTTGATCACG 60638 32 100.0 36 ................................ TGAACAGCATGGTGAAATAACCATTGATACTGACAC 60706 32 100.0 36 ................................ AATGGGTAATCCAAGCGGGTCAAGTGTGAAACGCTG 60774 32 100.0 35 ................................ AATGGAACTCCAATTTCTAGCAAGACTGCTCGTGG 60841 32 100.0 35 ................................ ACAACGTGGCTGGCGGTTGGGTTGGTGACTATCGT 60908 32 100.0 35 ................................ AGAACGATTACATGGTGGAATGCACATGGAAAGTA 60975 32 100.0 35 ................................ TTTAGTGATCGCAACTAACACCGAAGAAGAGTATT 61042 32 100.0 35 ................................ ATCAGTAGCTTTCTTTGTGCGTGGGTACGCAACAA 61109 32 100.0 35 ................................ AAAACTGCAAGTGGCGTTTACACTAGTTCCAACAA 61176 32 100.0 34 ................................ TAGGCATGCCATAGCTTCCGTATTTAATTATCCA 61242 32 100.0 35 ................................ ATCAGTGATCGCAACTAACACCGAAGAAGAGTATT 61309 32 100.0 35 ................................ ATCAGTAGCTTTCTTTGTGCGTGGGTACGCAACAT 61376 32 100.0 34 ................................ ATGAAATTCTTAATAAAATCAGGTGAAATTGGCT 61442 32 100.0 34 ................................ CCTAATAAGTCCAGTGACTTTAAAGAATAAGCTT 61508 32 100.0 37 ................................ ATAATATCCGACCAAACACCTTTATACGTTTCAGATT 61577 32 100.0 35 ................................ GAATCCGTATTGAAATACATTAACTTGCGTGACCA 61644 32 100.0 34 ................................ ATATCCTCCTTACAAAAATAGCGGCCAACCAACA 61710 32 100.0 36 ................................ GCACTTGAATCCGACAACGAGTAGGGTCGCTCCCAA 61778 32 100.0 36 ................................ AATTATTGTTCAACAACCACCGCGCACCGGCAAAAC 61846 32 100.0 34 ................................ TTATAATCGTAATCGCCCACCAATTTTTTAACCC 61912 32 100.0 35 ................................ CTGTCCTAGGCCAGATAGCATGTGGAGACCCAATC 61979 32 100.0 35 ................................ TGAAAATGGACGTCAATTATATGTAGTTAAGAATT 62046 32 100.0 35 ................................ AGGTCTTGCTCGTAGTCGTCGCGAACCTGCAGAGT 62113 32 100.0 34 ................................ GACACATGAGAAGCTAGCATATCAGAAAGTTCGA 62179 32 100.0 35 ................................ TGGACTGGTAGCAGGAGTGATGATCGGAGACGCTG 62246 32 100.0 35 ................................ TTCAATGGTATCGCCCATACTTGCGTTTACATAAG 62313 32 100.0 33 ................................ AGAACAAGTAAATCAGCAAGTGGTTAAGACTGC 62378 32 100.0 35 ................................ AAAATGCACGTCATAATTTTCTAACAACCAATAAT 62445 32 100.0 35 ................................ TTGTTTAGGCAAATTTACACCATTAAAATCGCAAT 62512 32 100.0 34 ................................ ACAATAAGAATAACATGGGGTGGTATGACTGCGC 62578 32 100.0 33 ................................ AGAAGGCTTATAGTGCTGACCAAGATAATTTTA 62643 32 100.0 35 ................................ CTTTATCTATTGGAGAAAGGGCGGCCCTAGATGAT 62710 32 100.0 35 ................................ TACAAGTTGTAGGTTTGATCGCAATCGGCGCAGTG 62777 32 100.0 33 ................................ ACGCAATCCATCCCGGTAAGGTTGTCGCTACCG 62842 32 96.9 33 ...G............................ GTTCATCTTCGCATTCGCGCGGGTGTTATTTAA 62907 32 96.9 34 ...G............................ ATAGCATAGTTGTATACCTCTTCGCGGGTACTGG 62973 32 96.9 34 ...G............................ CATATATCACGCCATTAAACTATCAAACCTTAGA 63039 32 96.9 35 ...G............................ ATCACAAAATCATATCCGAACATGTCCACCAAACC 63106 32 96.9 33 ...G............................ TTTAACCGAGTAAGCAGTAATTGAGTTCCAGCC 63171 32 96.9 35 ...G............................ GATTCTAAAGATAAAGCAAAATTTAACAAGCAATT 63238 32 96.9 35 ...G............................ CGACACCAAGGCTGAACGGAATGCAACTATGTTTG 63305 32 96.9 33 ...G............................ TCAAGTCATGATGGTGTTGACTTTTCTGGCGCT 63370 32 96.9 35 ...G............................ TTAACAGGCGATGGTAATAACAAACCAATTGGTTT 63437 32 96.9 33 ...G............................ ATTTGAGTTTCTAAGTATTCCTTGGCCAATCCC 63502 32 96.9 35 ...G............................ CATAAACAGTGCAAAATCATTGTTAGTTCGCAAAT 63569 32 96.9 34 ...G............................ AAAAATCTTAGGGTGCTTGCTAATGCTGTTAATG 63635 32 96.9 39 ...G............................ AGAAATAGCGCCATAACGTTCAATTGTGAAAGTGTTACC 63706 32 96.9 36 ...G............................ AACTTGACCCGCCACACTAAGCCCGTTAGCGTGTCA 63774 32 96.9 36 ...G............................ TAAAAATACTAAACCTAAAACTAAACCAGCTAAGAA 63842 32 96.9 36 ...G............................ ACATCGTCTTGCATAATCTGTTTGATAGCTGCTACT 63910 32 96.9 35 ...G............................ TTGATGATATTGCTCAGAACACTAAGGATACTTTT 63977 32 96.9 34 ...G............................ AAAAAGCTTATAGTGCTGACCAAGATAATTTTAT 64043 32 96.9 33 ...G............................ TTTAACATCTGCCATAATATAGATCTCCTTTTA 64108 32 96.9 34 ...G............................ ATTTTCTTTAGAGCACTTGTATGATCTGATAAAA 64174 32 96.9 35 ...G............................ CAGTCAATGCAGATGGAACTACTACAGCTTATGTA 64241 32 93.8 0 ...G.......................A.... | ========== ====== ====== ====== ================================ ======================================= ================== 71 32 99.0 35 GTCACATCCTTTATGGATGTGTGAATTGAAAT # Left flank : CCAAATACAGTTGCTAACTTGTTTCAGGTAATCGATTCAGCAACAACTGATGTGATTGTTCAGTATGGTGAGGGCAAAAATATTGCAGCTCAACTCATTTCTGAAAAAAGTAAATTTGAAAACATTTCGGGACTTTTAAAGCAGGCTCAAAAATATTGTGTTTCTGTTTATGGAGATCCGGGGAAAAAGGGTAGTTATCTCGGTAAACTAGTTGCAGATGGTAGTGTGCGTTATTATCCAGAACAGGATATTTTCATTGCTGAAGAAGGCTCATATAGTGAAGAATTTGGTTTGGGAGAAGGCAGATTTGGCTCTTTAAATTACTAATGCAATTGGTAGTAAAGTGCGAGAGTGAAGTGCACACAGAATTACAAGGCGATTCGCACCAATATTTGCAGAAAATTGTTTATTTTTTGTTGTATTTATTCGTTAAAAGTTTTTAAATTATGTACAGCCGTCTAAATATAGGTACTCGATAATTGAGTACACTATATTTTGCG # Right flank : TAAGCATCGTTTCAGATACTAATGTTAGTTATTCATATTTTTCACAATATATGAAGTTTATAAATAAAGCGTTTACATTTCTAAAAACGATGATATTATGATGTTAGAGAATGATACTACGTTACAGTGGAGATGAAAAAAGTGGAATATTCTGAAGATGATTTTCTGATGATATCTGGAATACAGCATTTTCGTTTTTGTCAACGACAATGGTCGCTAATTCATGTTGAACAGGCGTGGCAAGATAATTTTTTAACATATGATGGACAAATTTTACATACAAAAGCAGATCAGCCTGAAATTCGGGAGAAAAGAAAAAATAAATTAATTGTACGCTCTCTACCAATCCATTCCCGTGAACTGGGGTTGACAGGCATTTGTGACGTTGTTGAATTTGAAGAGGACCCTAATGGTGTAACCGTTTTTGGCAGTGACAAAAAATATATACCTAAACCAGTTGAATATAAGCATGGACACAAAAAATATGATTTGTCTGATGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACATCCTTTATGGATGTGTGAATTGAAAT # Alternate repeat : GTCGCATCCTTTATGGATGTGTGAATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //