Array 1 165037-162933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJYY010000007.1 Salmonella enterica strain 20REF-991 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 165036 29 100.0 32 ............................. CGGCCAATAACGGCTGGTTTATGCAGTTCACG 164975 29 100.0 32 ............................. AGCACAACGGGGGCGTGATGGAACAACAGGCC 164914 29 100.0 32 ............................. AGCGCTTGCACTGCCTGAAATACTACCCGGAC 164853 29 100.0 32 ............................. CGGCAAATCTTACCGGCGAAATGGTTAACAAC 164792 29 100.0 32 ............................. CCGGTAAATCCGGCTTTTTTTTCGCCCCCTGC 164731 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 164670 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 164609 29 100.0 32 ............................. GCGGGGATTATGGGGTTTGCCGGCGATGGCAA 164548 29 100.0 32 ............................. GTATCGCTGCTGGTATCGGTGACGGCCTGAGC 164487 29 100.0 32 ............................. CGTGACCGTATCGTCAAACGGTAAACGTTTTA 164426 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 164365 29 100.0 32 ............................. GTTAAGGAGTGAGCATGGCTAAGACACAAATG 164304 29 100.0 32 ............................. TGGCGCGCTAATCCGCCATCGGTACGTATCAC 164243 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 164182 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 164121 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 164060 29 100.0 32 ............................. GTAATTGGCTTGCGCGATTGAATGTTTCATCG 163999 29 100.0 32 ............................. AGATTCTTTTCCTTGGGCCATTAACTCTTCAT 163938 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 163877 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 163816 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 163755 29 100.0 32 ............................. CGCCAGTTCTTCAGCTGGCAACGACAGAATGC 163694 29 100.0 32 ............................. TTCTTATTAGTAGTTTTGAAATCCCCGCAGCA 163633 29 100.0 32 ............................. GCATCGATGAAAGCCAGCATCATTACGCTGCG 163572 29 96.6 32 ............................A GGAGTTGGCTGGTACTGATGACGCACGCCAAC 163511 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATTGAACG 163450 29 100.0 32 ............................. GGGTTTAGCTCGGTTTGCTATGACGGCCAGTA 163389 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 163328 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 163267 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 163206 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 163145 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 163084 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 163023 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 162962 29 100.0 0 ............................. | A [162935] ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTCCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCAAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183566-181708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJYY010000007.1 Salmonella enterica strain 20REF-991 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183565 29 100.0 32 ............................. CGCTCACTAAATGGATGGTTGCCGGGATATGG 183504 29 100.0 32 ............................. CAAAACACTGGCAGGCAGTGAATAATCAGGCC 183443 29 100.0 32 ............................. GGGTATTGGGTTATTAAAGACCTGAGCGAAAC 183382 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 183321 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 183260 29 100.0 32 ............................. CGCAGGTGCTGGCGGCCAGTGAGCTGGGCTGG 183199 29 100.0 32 ............................. ATTTTCATGGCCAGGCCGGGATCGGTGGGGTT 183138 29 100.0 32 ............................. GATAACGCAGCCGTTATGCTCGCAGAGATAAA 183077 29 100.0 32 ............................. CACATGGCCCGATCCGTTCCGAGAGTCTTTTT 183016 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 182955 29 100.0 32 ............................. ACACTGCCGATCTCATTGTCCGCGCCCGCGAG 182894 29 96.6 32 ...............T............. GCGGCGTCAGATTATTTTAACATTACGCTAAG 182833 29 100.0 32 ............................. ATAGGCAGTATCAAATTGCGGCGTGGTTGATT 182772 29 100.0 32 ............................. AATGAGTTAGCTGATTCATGGTTAAATGAAAA 182711 29 100.0 32 ............................. GCTATCTCTTCTTTCACTGACCTTGCCAGGCC 182650 29 100.0 32 ............................. CGAAAACCGCCTCAACACAATTGCAAATACGC 182589 29 100.0 32 ............................. CTTCTGGTGGTATCGCCGCCGGGATGGTGGCA 182528 29 100.0 32 ............................. GGAACAGCAGGGCGCTGGCTATCAATCTGATG 182467 29 96.6 32 ............................T GAATCCGCTGGTCATGGTGGCCCAGGTATTAA 182406 29 96.6 32 ..A.......................... ACAAGCTACGCGGTAAATTCTGGTAATTTCAC 182345 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 182284 29 100.0 32 ............................. CATTTTAACGGTCATGAAATCGGCGCTGGTTA 182223 29 100.0 32 ............................. GTCCGTTGCCACTGTTGCCGCCTGGCGGGATT 182162 29 100.0 32 ............................. TGCCGACCGGAAAACAACAGACAACAAATAAT 182101 29 100.0 32 ............................. TCGGGTAATGGCGGGTTGTGGTTGCGTTGGCG 182040 29 100.0 32 ............................. ATGAAGGACGAGAAACAAGCGGCGAGCCTGGC 181979 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 181918 29 100.0 32 ............................. GTTCATCTAGGGAAATAGACTCAATGAGAGCG 181857 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 181796 29 96.6 32 ...........A................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 181735 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGTTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //