Array 1 166386-164728 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWD01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-020 NODE_2_length_615751_cov_28.1627, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166385 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 166324 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 166263 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 166202 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 166141 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 166080 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 166019 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 165958 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 165897 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 165836 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 165775 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165714 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165653 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165592 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165531 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 165470 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165409 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165348 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165287 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165184 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165123 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165062 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165001 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 164940 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164879 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164818 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164757 29 96.6 0 A............................ | A [164730] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183770-182644 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWD01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-020 NODE_2_length_615751_cov_28.1627, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183769 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183708 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183647 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183586 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183525 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183464 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183403 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 183342 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 183281 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183220 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183159 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183098 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183037 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182976 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182915 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182854 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182793 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182732 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182671 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //