Array 1 5544-7036 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWK01000021.1 Salmonella enterica isolate STY197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5544 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5605 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5666 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5727 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5788 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5849 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5910 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5971 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6032 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6093 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6154 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6215 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6276 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6337 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6398 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6459 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6521 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6582 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6643 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6704 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6765 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6826 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6887 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6948 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7009 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23168-25132 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEWK01000021.1 Salmonella enterica isolate STY197, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 23168 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 23229 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23290 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 23351 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 23412 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23473 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 23534 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23596 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23657 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 23718 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23779 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23840 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23901 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23962 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 24023 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 24084 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 24145 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 24206 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 24267 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 24328 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 24389 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24451 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 24554 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24615 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24676 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24737 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24798 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24859 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24920 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24981 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 25042 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 25103 29 96.6 0 A............................ | A [25129] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //