Array 1 637476-639637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002369.1 Streptococcus thermophilus TH1435 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 637476 36 100.0 30 .................................... AAATCTATGGTACTGGTCAAAATAGGGAAA 637542 36 100.0 29 .................................... TAAATTGATTATTATATATACATAAAGTG 637607 36 100.0 30 .................................... CAACTTGAAAATTAGTAAAACATACTATAT 637673 36 100.0 30 .................................... GCTAAACAAAAAGCTGAAGCAGAACGCCTA 637739 36 100.0 30 .................................... TGCTACACCTAAAACCAATTCACTGCGAGA 637805 36 100.0 30 .................................... TGGGAAATTGGGAGAAGATTACAACACGTC 637871 36 100.0 30 .................................... CGTGTCGCTAAACAGACTAGCAAGACCTCT 637937 36 100.0 30 .................................... CCTATTATATACACATTTAAAACGACACTA 638003 36 100.0 30 .................................... CGTGTCGCTAAAGCTGCGAGTAAAACCTCT 638069 36 100.0 30 .................................... GAATCCACTTTGTTCTTTATAGTAGTTAGT 638135 36 100.0 30 .................................... CGTGCTGTCAGTCAATAAGACATGGGACTA 638201 36 100.0 30 .................................... TGAAAGTCTCACTAGTCCATTAGTGCGGTT 638267 36 100.0 30 .................................... TATTTATTACAAATAACAACCATATTCTTA 638333 36 100.0 45 .................................... ATTTGACCGTTTATTTANNNNNNNNNATCCAACCTGAGAGCCAAG 638414 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 638480 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 638546 36 100.0 30 .................................... CGGACGAAGCAGCTAGGCTACTGCGCTTCG 638612 36 100.0 30 .................................... CGTGCTGTCAGTCAATAAGACATGGGACTA 638678 36 100.0 30 .................................... TGAAAGTCTCACTAGTCCATTAGTGCGGTT 638744 36 100.0 30 .................................... TATTTATTACAAATAACAACCATATTCTTA 638810 36 100.0 30 .................................... ATTTGACCGTTTATTTAGACGTGCTAAAGT 638876 36 100.0 30 .................................... AGAAATTCATGGCTGAAAAACTTTGGCATA 638942 36 100.0 30 .................................... ATATATGTATTTAAGTACACAAAAGACCCT 639008 36 100.0 30 .................................... GATGAAACACGCATTAAGCGATTAAGTCCG 639074 36 100.0 29 .................................... CGACACAAGAACGTATGCAAGAGTTCAAG 639139 36 100.0 30 .................................... ACAATTCTTCATCCGGTAACTGCTCAAGTG 639205 36 100.0 30 .................................... TACCATCTTAGGATAGGTACTGGTCATGCC 639271 36 100.0 31 .................................... CGTGTCGCTAAACAGACTAGCAAGACCTCAG 639338 36 100.0 30 .................................... AGAAGTCACTCGTGAGAAACACTACTCAAA 639404 36 100.0 30 .................................... CTTTTTTGGCAATCCAACCTGAGAGCCAAG 639470 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 639536 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 639602 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================= ================== 33 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : CCGGACGAAGCAGCTAGGCTACTGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTCAAAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACCTTTTTTGGCAATCCAACCTGAGAGCCAAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTGCAAACAAAACAGTGCGATCGCTTGCAAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAATAATTTATGGTATAGCTTAATATCATTGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTGCATCGAGCACGTTCGAGTTTACCGTTTCGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTCTATATCGAGGTCAACTAACAATTATGCTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 639773-641324 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002369.1 Streptococcus thermophilus TH1435 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 639773 36 100.0 30 .................................... CTTTTTTGGCAATCCAACCTGAGAGCCAAG 639839 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 639905 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 639971 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 640037 36 100.0 30 .................................... TCTATATCGAGGTCAACTAACAATTATGCT 640103 36 100.0 30 .................................... AATCGTTCAAATTCTGTTTTAGGTACATTT 640169 36 100.0 30 .................................... AATCAATACGACAAGAGTTAAAATGGTCTT 640235 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 640301 36 100.0 30 .................................... GAGCGCCCTCTATTACTTAACATAAACGGT 640367 36 100.0 30 .................................... CAGATAGCTGTTAAGTCGCCTGGCTGATAA 640433 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 640499 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 640565 36 100.0 30 .................................... ATAACTGAAGGATAGGAGCTTGTAAAGTCT 640631 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 640697 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 640763 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 640829 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 640895 36 100.0 29 .................................... TCATAGCGGATTCGAACCGCTATAAGCCC 640960 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 641025 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 641091 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 641157 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 641223 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 641289 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTTTGTACTCTCAAGATTTAAGTAACTGTACAACCGTGTCGCTAAACAGACTAGCAAGACCTCAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAGAAGTCACTCGTGAGAAACACTACTCAAAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACCTTTTTTGGCAATCCAACCTGAGAGCCAAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTGCAAACAAAACAGTGCGATCGCTTGCAAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAATAATTTATGGTATAGCTTAATATCATTGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACCGGACGAAGCAGCTAGGCTACTGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTCAAA # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 3 855793-856045 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002369.1 Streptococcus thermophilus TH1435 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 855793 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 855865 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 855941 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 856016 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGACTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 1271209-1269853 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002369.1 Streptococcus thermophilus TH1435 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1271208 36 100.0 30 .................................... CGCTTCATCAGGAGTTATGCCGCTTTACTT 1271142 36 100.0 30 .................................... CTATGGGAGTTTCAAAGATTATCAAAGCAC 1271076 36 100.0 30 .................................... AAAACCAAGTCGAGGCTGGTGGCTTGGTAA 1271010 36 100.0 30 .................................... GTTCGTCTTTAAGAGCTTGAAAGGCTGCTA 1270944 36 100.0 30 .................................... CTATTTGCAGACAAAGAATTCAGTAAATCA 1270878 36 100.0 30 .................................... CGATGGAAATGATGGATTGCCTGGCAAAGA 1270812 36 100.0 30 .................................... AATATGTTCAAGGTGCTAGAACCGAAAACA 1270746 36 100.0 30 .................................... AGACGTCCATTTTGCTATCTAGTTCAGGTA 1270680 36 100.0 30 .................................... AACGGTTAAATGGCATCTAACATTTAACTC 1270614 36 100.0 30 .................................... ATTAGATGCTATTATCACCGATGTTAAAAT 1270548 36 100.0 30 .................................... AGTTAAAGCTGATGCAGGTGTATTGACTGG 1270482 36 100.0 30 .................................... ACCAGTCCACAATATATTAATTGAATTTGA 1270416 36 100.0 30 .................................... AACGGTTAATTTCGATATTCCAAAGAGTTA 1270350 36 100.0 30 .................................... TCTGCCGCCCCGGGAAACCCAAGTGGTCAG 1270284 36 100.0 30 .................................... CAAACCATAACACTGACGACAATTCCAAGA 1270218 36 100.0 30 .................................... TAGAGGTAATGACGGACTACCAGGTAAGGA 1270152 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCG 1270086 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 1270020 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 1269954 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 1269888 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //