Array 1 273021-273584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAILE010000002.1 Pasteurella multocida strain P-mult-10-KZ Contig_2_34.1974, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 273021 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 273087 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 273153 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 273219 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 273285 36 100.0 30 .................................... ACCGCACGTAAATGATTAGCGTCCTGACTA 273351 36 100.0 30 .................................... TAAGATTGTATTAATATTATAATAATAGGA 273417 36 100.0 30 .................................... TAAGATTGTATTAATATTATAATAATAGGA 273483 36 100.0 30 .................................... TGTGCCACAAGGCTTACGAGATTTATAAGA 273549 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.8 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 496911-496403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAILE010000001.1 Pasteurella multocida strain P-mult-10-KZ Contig_1_35.7789, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 496910 28 100.0 32 ............................ TGACTATGTCGGGAGGGCGACGAATACAATAC 496850 28 100.0 32 ............................ TATTCAAAAAGTTAATCTTTATACTTCTTCAA 496790 28 100.0 32 ............................ AGAATGTGGCGTTAAGTTAGCAAGACAGCGAT 496730 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 496670 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 496610 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 496550 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 496490 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [496480] 496429 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTAG # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29282-28833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAILE010000018.1 Pasteurella multocida strain P-mult-10-KZ Contig_18_31.4487, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29281 28 100.0 32 ............................ ACTGATGCCCTTTATTTATGCACGTTGTTTTG 29221 28 100.0 32 ............................ GTGAAAATTCAAGGTCAAGCGGATCATTCTGG 29161 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 29101 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 29041 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 28980 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 28920 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 28860 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 252840-253165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAILE010000016.1 Pasteurella multocida strain P-mult-10-KZ Contig_16_30.5801, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 252840 37 100.0 34 ..................................... TCAATCTTTGTGCTGTTAAAGGTGATGGGTTTGG 252911 37 100.0 36 ..................................... CTTTAAATGCGGGTTGGAACGAGGAACTATTAAAGA 252984 37 100.0 35 ..................................... TGATGGCTGATGGTTTAATTGATATCCATGATAGT 253056 37 97.3 36 ....................................C TGTCTAAAGCCGTGTAATGTTTGTCTGTGTTTATAT 253129 37 73.0 0 A..A.........AA..G........A.A...T.TT. | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 94.1 36 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAT # Left flank : CAACAAACATTTTCGCCAAACGTACGGGGGTTTCTTCTAAACTATCATCACGTAAATCTAACCCAATCAGCTTCATCACTTCACGCATATGTTGTTCAATCCCCGCTCGACGCGTATCTCTGTCTTGTTCTGGGGTAATCATTGGGGTTTCAATCCCCTTACTTAATAATGCGTTGCGGACTTTTTCTGCTTCTGGTGAAATCTTGTTCATGTAAAACTCCCGATAAATAATCCGCACATTCTAGCAAACTCTCGCCAAAGTACAAATGAGAATAATTGGTAGAGAGGATGAAAAGTTTTTGGCTCAAATCAATATCCATAAAATAGGCATAGGCTAAAAAATAAATATAATGTAAAATGAACACGTTCTTTGGCTAGCAGATGAGATTCAAATTGATTATTTTTCATTCAAATCAAGAGTTAGCTTTCCACTTCAATGGGAAAATTGGGAAGCCTATGTATAACATATTGAATAAAAAAAGAAAAACTCATCCTCTGCG # Right flank : TATGTAGCGTGGGCATACTTGCCACCACATAACCACTCTAAACTTTCCCATTCAAAAGTACGGTTATTTTTCAAAAAGTTTTACAGCTTTCTCTCTGCTTATTTCTTATTAGTATAGGCTCAATAAAAAGAGATCATCCTGCGTTTTTGGTATAAAATATTGCCCGTTAAACTCAACTAAGGATTCAATTATGTTGCCTCTTGAACAAGCACTGACTCAAATGCTCGCTATGTTGCCAACACCAGATTGTGCGCAAGCCGAACAGCTCCCCCTTCAACACGCGGTGAATCGCATTTGTGCTGAGGATATCATTTCCCCGCTTAAAGTGCCCTCATTTGATAACTCGGCGATGGACGGCTATGCGGTGCGGCTGGCAGATTTAGCACAAAATTTAACTCTCACGGTCGCAGGAAAGTCCTTTGCGGGCGCACCTTTTGACGGGGAATGGCAAACACAAAGCACGGTCAGAATTATGACAGGAGCAATGTTGCCGGTGGGTG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //