Array 1 126003-124876 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010242.1 Escherichia coli strain S56 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126002 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 125941 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 125880 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 125819 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 125758 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 125697 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 125636 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 125575 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 125514 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 125453 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 125392 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 125331 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 125270 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 125209 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 125148 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 125087 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 125026 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 124965 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 124904 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142873-141502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010242.1 Escherichia coli strain S56 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 142872 29 100.0 32 ............................. ACGCTGACGACCTCTGGATCGGCGTCAGTGGG 142811 29 100.0 32 ............................. GAACGGGTACGATTGTTATTAGTGGCGAGCCA 142750 29 100.0 32 ............................. AGAGGACATAAAAGCTGCACTATGGTAGTAAT 142689 29 100.0 32 ............................. TCGCTGGCGGGGACCGATCATATCTGTCAATC 142628 29 100.0 32 ............................. TCCGTAATAGCCGAACAAATCACCGAGTTTGA 142567 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 142506 29 100.0 32 ............................. CCGCCCATTGAATTAGCGAGGCGCATAATAGT 142445 29 100.0 32 ............................. TCCGAGCGCGTAATAGCGCGCGCCCGGAAACA 142384 29 100.0 32 ............................. TAAATTAAAAATCGCCCACACCGACTACCGAT 142323 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 142262 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 142201 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 142140 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 142079 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 142018 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 141957 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 141896 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 141835 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 141774 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 141713 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 141652 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 141591 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 141530 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //