Array 1 86659-85501 **** Predicted by CRISPRDetect 2.4 *** >NZ_CXOJ01000005.1 Xanthomonas translucens pv. phlei isolate LMG730, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 86658 31 100.0 35 ............................... TCTTCGGGGTGGAGGGAGAAGGTGTTGGCGACAGC 86592 31 100.0 35 ............................... CAGTGCAACAGTAGCAGCACGTTTTGCACGTGCCA 86526 31 100.0 36 ............................... TCGTACTGTTGTTTTTGGCCTTCGGGTGCCTTGCGG 86459 31 100.0 35 ............................... CCGAGCGAGCTACACGACGCGAGCGGCAGCAGGAT 86393 31 100.0 35 ............................... CAGTACATGGGCGCCGCAGCGACTGGCCGGTGGGC 86327 31 100.0 37 ............................... CCGCGGATCGTGCACACCTCTCCGGCGCGCAGGCCCG 86259 31 100.0 34 ............................... CCACTGGCGCAATCCAGGCTGCCATCAAGGAAAA 86194 31 100.0 37 ............................... GCGCGCACATGCAGTACATATCGCGAAATGGCGCTGG 86126 31 100.0 36 ............................... ATCCGCTGACGATGGGATATCTTGTTGCCGCAGAGT 86059 31 100.0 36 ............................... GTCTTGCGCCAGTCGGGGCGTGACTTCTCAGTCAAG 85992 31 100.0 36 ............................... GAGTTCCAGAAGGCGCTGATCCTCAGCGGCCAGGGT 85925 31 100.0 35 ............................... CAAGCGTCGCTTTGGTCCCGCTCGATGGCTGCCCG 85859 31 100.0 33 ............................... TCATCGGAGTTTGCCTAATGGGCTGGTACGAAT 85795 31 100.0 35 ............................... CCGGTGTCGCCGCTGGCACGCAGCTCCGCAATCTG 85729 31 93.5 36 .............C......C.......... ACGACTATCCAAGACGCGATGACGGAGTGAAAAGCG 85662 31 93.5 34 ......G........A............... ATCGGACGGCACTCTCTGGAGGCTTGGAGCTATC 85597 31 90.3 34 .............A..A...C.......... GCGTTGGCAGCTCGTCGCGCTGGTGAGTTTTAAG 85532 31 83.9 0 .....T.....T...A.C.......C..... | G [85505] ========== ====== ====== ====== =============================== ===================================== ================== 18 31 97.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAAAGGCCGCCGCGCCATGATGGTTTTGGTCAGCTACGATGTCAGCACGAGCTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAAGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCGGGCGTCGACAGCCTTCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCTCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTTGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGGCCGGGGAAAACCTGGCAGGTTCGCGCAACACGCCAAGTCATTGATTTTAAATTAAAATACTTAATCCCCTCCGCTCATTGCATGCCCGCGGCAGCCCAATTCGATTGCGTCTTCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAGCACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGACTTGGCGACGCTGTGTCGTTCTATCGCCTTTGCCCACAAAAAAAGGCGCAGTCTCGCGACTGCGCCTAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTCCCTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACCGTTCCGGCCGGCTGGCCGTTCACGGTGACTTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGTTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACAGCGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCACCGGCGGTATTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCTG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //