Array 1 176479-177087 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHR01000005.1 Listeria monocytogenes strain FSL L7-0685 NODE_5_length_337222_cov_34.274953, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 176479 29 100.0 37 ............................. AATAGCCACATCACTCGCGGAATCAATGAAAAATAGC 176545 29 100.0 36 ............................. ACGGCACTAATGCTCTTACCAGTATTTTGCATTTTC 176610 29 100.0 36 ............................. TCCTTTTGATTAGCGGGTTAGAGAATTTTGCATGAC 176675 29 100.0 35 ............................. AGTTTTTCTGTTCAGGTCCAATGTTGCGTTTATTT 176739 29 100.0 34 ............................. GACGACCTTTGTTCTCATATGTCTCAATAGCCTC 176802 29 100.0 36 ............................. ATCGCTTTTATATTTTTTGAACTTCGGCACCCACTC 176867 29 100.0 34 ............................. GCAATACTGAAAGCTTGGCACGGAAATCCTCCTG 176930 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 176995 29 96.6 35 ..............T.............. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 177059 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 97.2 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAAGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTTGGGAAATCTTCAGGATAAGGCGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCAACATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATTGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 195085-197205 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTHR01000005.1 Listeria monocytogenes strain FSL L7-0685 NODE_5_length_337222_cov_34.274953, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 195085 29 100.0 36 ............................. CTATTATACCCTCCTAGTTATTCATTGACCATCATC 195150 29 100.0 35 ............................. TAAGTAATGTTACATATGCGCTTGTATGGTTCACG 195214 29 100.0 35 ............................. ACGATTTTTCTGTTTTTACCTGTTTTGGTGTTATA 195278 29 100.0 36 ............................. CTTGTTGATGACATCACTTCTAGCTTCTCGGTTGCA 195343 29 100.0 38 ............................. CGGCTTTAATGTCTTGAATACCTGTGATACCCATACGA 195410 29 100.0 35 ............................. ATTTTTCTATTACTGCGCTTCAACGTTCAGATTTA 195474 29 100.0 35 ............................. CTAGCACCAAATATAGTGGGTTGTGTGAAAATACC 195538 29 100.0 37 ............................. GTGCCTTGTGCAACACTTGTTACACTATCCATAATCA 195604 29 100.0 36 ............................. CATTAATGCTAAAGAAATCGGATTAGATGGCATTAA 195669 29 100.0 36 ............................. CAACCCGAAAAAGGTGGATGGACTAGTTATGACTAT 195734 29 100.0 36 ............................. GAAACCCAGCTCGAAAAGTAACTATAAAAGGAACTG 195799 29 96.6 36 ........................C.... TATTTTCTCAACCTTTTCAGCTGTATCAATAAAAGA 195864 29 100.0 37 ............................. CCTTCTAACAATGCTATAAATAAGTCATTAAGGCGCT 195930 29 100.0 37 ............................. GTGAACGAAGGTAAATACTTTATTTATGATAGAGATT 195996 29 100.0 36 ............................. CCGTTTGCGCCTTGGATACTATCTCCTATTGCTTTT 196061 29 100.0 34 ............................. GTAATAGAAGAAGAGGATCTATACGAAACTACTA 196124 29 100.0 36 ............................. TTGCTAGACCTCTAAATCATCTGCGAAGTCATCTGC 196189 29 100.0 37 ............................. GTTCCTTTGCCAACAATTCCCCCAACTAAAACAAGAA 196255 29 100.0 36 ............................. TCGCTCCATTTGTATCCTTTCTTGTGCATGTACACC 196320 29 100.0 36 ............................. AACTGCTGATGCCTTTCGCGTGTGATACAGACTTCA 196385 29 100.0 35 ............................. AAAAATGGCAGAAATTGCTAATCAGCAACAACAAT 196449 29 100.0 36 ............................. TTGAAAGGATCTCTTTGCTGTTATTTCTGCCATTTC 196514 29 100.0 34 ............................. TCACTCGCTTTTCTTCGAGTTCACTTAAAACCTT 196577 29 100.0 37 ............................. CCTGCTCAATTTTCAACAGATGGAAAGGGCTATATAT 196643 29 100.0 46 ............................. CCTGGTACACCCGGTACACCCGGTACACTAATAGCTTCCAATGTAC 196718 29 100.0 37 ............................. CATTGAAATCTACTTCATAAACGGCTAGCCATTGGTC 196784 29 100.0 37 ............................. AGACATAGATGCGTTAACTATGGCGGTCGCAGCTAAG 196850 29 100.0 37 ............................. ACGTTCCATCGGCAGCTGTCACAAATTCTGTGATATC 196916 29 100.0 36 ............................. TTGTATCCATTAGCCCTGTTTGAGCGTCTGTCATTG 196981 29 100.0 35 ............................. GCCTCATCAATACTTTTCATCATCCCATTAACTGA 197045 29 100.0 37 ............................. CCTCATTCAAAATAAAATCAATCACTCTGTAATATCT 197111 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 197176 29 93.1 0 .......................A....C | C [197199] ========== ====== ====== ====== ============================= ============================================== ================== 33 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCCCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTTGCAAATAACGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //