Array 1 697-147 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUY01000008.1 Bifidobacterium pseudolongum subsp. globosum strain 2001B Contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================ ================== 696 37 97.3 27 T.................................... CACCCTGGGACACTCCGCCGTTACGCA 632 37 100.0 27 ..................................... CGCGCAGAACCTCGACATCGCACGTGA 568 37 100.0 27 ..................................... CGTGTTCACGCATGTGAACGATTCGCT 504 37 97.3 27 T.................................... ACGACGCCGAAACCAAAGCCATCAAGG 440 37 100.0 28 ..................................... CCCAACTACATGCAGCGCATCGCCGAGG 375 37 100.0 27 ..................................... AGTTCGCGCAAGCGTTTGTCGCACCAT 311 37 100.0 27 ..................................... TCAACGCCAAGAACGGTGTGCCCTCGC 247 37 100.0 27 ..................................... GTGATTCGTGCCATCCGCTCGTACATC 183 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================ ================== 9 37 99.4 27 ACAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Left flank : TCTCAGTTCAATGGAGGACTGACAATTCCCAGTTCCATTGACGAGTTTGCGCAGCAATTTGGCTTGTATTGCGAGTCAAAGGAGAGAGTATTGACAACTCCGATTTTTGGAGGACAGGATGAAAAAGGATGAGGAGAGTGGGGGAATGTGGTGCTTGGTGATGTTTGATTTGCCTGTGCAGACCAAGAATGAACGACGCGAGGCAACAGCGTTCAGGAATATGCTGCTTGATATGGGTTATATGATGGTGCAGTTCTCCGTGTATGCGAGATATTCACCAACCCAATCGGGAAACCGATCCACGGTGAAAATGATTAAGCAGCATTTACCGTCCGGCGGGAAAGTACGGGTGGTGCATATTAGCGACCATCAATGGGTGCAATCTCTGCGTTTTGTCAACGAGGTTCCTCAAAACGATGTGGAGGCACCAGATGTCTGCACTGTTTTTTGAACATCTTTTTGGTAAAAATCATTGGGAAACCTACCTTCTTGGCAGGCTA # Right flank : CCTGCGCCGCGCCGTACGCCTGTATTTTGTCAAGTCGGTGTTTTGGTTTTGGTCATGTAGTTTTTTCGGTTTTGGTCATTGGGGCATGCTGGTCGTGGTTGATTGGTTGTTGGTGTGGTCGAACATGAGGGCTTCGCTCATGCGTCG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Alternate repeat : TCAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 39443-38000 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUY01000007.1 Bifidobacterium pseudolongum subsp. globosum strain 2001B Contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 39442 36 100.0 28 .................................... CACCCGTTCCCATGCGTTCATTCACTAT 39378 36 100.0 28 .................................... TGCTCGACACAATCCGCATGCGCGATAA 39314 36 100.0 28 .................................... TAGGGAAAACAGGTGCACTGGAGGTAAT 39250 36 100.0 28 .................................... AGACCGAGCGTGACTGGATGCGCGCACT 39186 36 100.0 28 .................................... CGCCTCGGGAATGCTCGTCGTCGGTGGA 39122 36 100.0 27 .................................... GTGGCGGCCATCGCCTGTCGCTTATGG 39059 36 100.0 28 .................................... CGCCCTTCTGTTTGCCGGCGATGCTGAA 38995 36 100.0 28 .................................... TGCTTCCCTGGACGGTTCGGCGGCTGTG 38931 36 100.0 28 .................................... ACATCGGCTCGATCGTCATCGGACTCTA 38867 36 100.0 28 .................................... GACTGCGGCCGTTCCCATCGCTCCCCCG 38803 36 100.0 28 .................................... TCATCCCTTCGGGTTCACCGCCGGCCTC 38739 36 100.0 28 .................................... GCAGCAGGTGCTGCTCGAACAGCAGCAG 38675 36 100.0 28 .................................... CTTGGAGCGAGGTTTGGATTGTCTCGAA 38611 36 100.0 28 .................................... CCTACACTGGTGTCATCGCCGTGAGTAC 38547 36 100.0 28 .................................... CGTCCGAAACACTCATCTCACGCGGATT 38483 36 100.0 28 .................................... TTTCGGCCCGTTCTTGGTGCGTCGTTCG 38419 36 100.0 28 .................................... CCTTGTATTAGCCGTGCGCTAGTCCGGT 38355 36 100.0 28 .................................... CGTCGACACACGGGCCGGAACCACGATA 38291 36 100.0 28 .................................... CTCGGGTGGGGCTACTTGCACGGCCCCA 38227 36 97.2 28 ...........................G........ CCAGCGACAACGAGGCCTTCGAGTATTC 38163 36 97.2 28 ...........................G........ CCAGCGACAACGAGGCCTTCGAGTATTC 38099 36 100.0 28 .................................... GGTGCGAGCAGGCATGGATGCTCGCACT 38035 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 23 36 99.8 28 CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Left flank : CTTTCAACTGGAAGAAGTCAGACGCTCCCAGTCAAACAAGGCCCTGTAACAGTGGTCGGCATGCTCCCATGACCAAACCCGAAACTTTTACATGACTAAAACCGCAATCTCTAATTGAACACAAACATACGCCAACTCTAA # Right flank : ATGGGTCTACTTATCTCATGTGTCAAGGTTAGTTTATCAAAGAGCGAGCCAATTTGCAGACTCCCCTATCCCGTTGTCTCGATGAAAGTACAACGCCCAATAGATTGGTAATTGTCCAGAAAACCAGTCCGAGGGGATTTTGACCTATGAGAATGATATATTCGCATCTGCTTAGAAGACCAATTGGCCATCCAGATTGATATCGGACACAGCACCGGCATAGGGGCAATAGGTGCGATGCTCGGGTGTAGCATATCCACCATCAGGAGGTAGATCAAGCGCGATATCTGGTTCCCGTTTAACGAGAGTGAGTCCTATTACCTAGGTCAAATGCCTCAAGACGGGTCTGTAGCCGGTCTATTGCATCGCTGGCCTCGCGCAATATAAGCGCAGACTGAAGCCGTGCAGCCGCAGGCGGTCGCATGGCTGGACTGTGGTCGCTTGCTGCTGCCGGTGTCATGGGCAGGCTGCGTGTCCTGTGGCCAGATGATCGGCTCATA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTCTATCAAGAAGGTAGGAAGCTAATTTCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //