Array 1 137474-136185 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIIK010000003.1 Escherichia coli strain PBIO858, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 137473 28 100.0 32 ............................ AGTTGGAGTATGCGCGTGGGCTTAAAGATCGC 137413 28 100.0 32 ............................ AGCAAAAACCGGATATAGACAATCTCACTAAA 137353 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 137293 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 137233 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 137172 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 137112 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 137052 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 136992 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 136932 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 136872 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 136812 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 136752 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 136692 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 136632 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 136572 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 136512 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 136452 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 136392 28 100.0 32 ............................ GTAAACGGAATTAGCAGCAGCATGATCAAAGA 136332 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 136272 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 136212 27 92.9 0 .......................C-... | T [136193] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGCGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAATACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 147100-146530 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADIIK010000003.1 Escherichia coli strain PBIO858, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 147099 28 100.0 32 ............................ CGTGCGTATGCTGCCGCGCGATTCAGTACATC 147039 28 100.0 32 ............................ CGGCGCAGTGGTTTCCATTGGTGGGAAAAATG 146979 28 100.0 32 ............................ GCATCACGTGTGGTGACTGAATACGCGGTCAA 146919 28 100.0 32 ............................ AGAAGGGCGGGCGTCGTGTTGTTAAGCGCGAA 146859 28 100.0 32 ............................ AGCGGTCGCCAAGGCAATGCTCGTACGCCGTC 146799 28 100.0 32 ............................ ACATCGACCGGGCCTGACCTCCTGCCTCCACC 146739 28 100.0 32 ............................ TGGATTACCGAGGCCCGAAAATATATTGGTGA 146679 28 100.0 32 ............................ AAAAAGTTGCGTCGCGTGACCGGCACTATAGA 146619 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 146559 28 85.7 0 ....................T...C.CT | C,A [146533,146536] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //