Array 1 2769009-2768260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTBO02000001.1 Enterobacter hormaechei strain FDAARGOS_68 scf7180000000002_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2769008 28 100.0 32 ............................ GCTGGGCGTCGCTTACGTGCCGGAATCGCTCT 2768948 28 100.0 32 ............................ GATTCAGGCGCTTGAATGTACATGGCTGATTA 2768888 28 100.0 32 ............................ TGATTTTTGCCAGCGCGTCAGCGGGGCGGCGG 2768828 28 100.0 32 ............................ AACGATAAATCAAAGGCCACGGAGCGCGCTAT 2768768 28 100.0 32 ............................ AACTAAACGTACAAGTATAAGGAAACAAGGTT 2768708 28 100.0 32 ............................ GTCAACATGCTGAACTATGCCCGCATTGAATT 2768648 28 100.0 32 ............................ TGCTGCCGCCATACCGTTATGGTGCGCGGCTA 2768588 28 100.0 32 ............................ GTCAACCCAATACCTAGCTCTTTCTTTAGCAA 2768528 28 100.0 32 ............................ ATATCCAGCGGGATTGGACGGTACTCGTCGGA 2768468 28 100.0 32 ............................ CGTCATAATTGCGATCATGACGAGCTGTTTAA 2768408 28 100.0 32 ............................ TGGTTCCGCGTAAAGGGGCTATTTGCCTCGAC 2768348 28 100.0 32 ............................ TTCCTGCGATTGCTCTATGGCGCGACGGGTGA 2768288 28 85.7 0 ...........A........T...T..C | T [2768264] ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGCGCCACACGTTCGCTCTCGTCGGGCGTTAGCGTCCGGCCCGTACTTTTGCGACGGGCAACGTTACGCTCGTTAATTCCCGTGACGCGTAAAATCTCCGCTTTCGACATGTCCGTCCACTCGTGAATATTGTCGAGGACGCTGACGGGTAATCCTTGATTGAGATATTCAATCAACCGCATGCCTCTGCTTGCAGGTAAACCGGCGTAGCGCCACAGCGTGTTATCAGCCGGCCTTTGCGCAGGAACCCATGTTCTCATGATACCTCCTGGATGATGTCATTTGTCATGAGTAAGTATAGCCATTTGTCAGGGGGTATGGAACGGGTGTTTTTTGTTCAGGGTGGGGTAAAAGAAGGATGGGATTTGACCCTAATTTTTGACCAAAATGTAATGCATTGATTTTTAGATTAAATATCCTGGAGCGCAAAAAAAGGGTTTGAGCAGGGATTTTAGCTTTTTTTGTATGAAAATCATGATGGTGGAGAGATATTATTTCA # Right flank : ATCCAATGCAGCAGTACTTCCCACCGCACAATCAACACAAAACCCGAAACAAAACCCAACCAATCGTTCAAATAATCGACTGTGCTAACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATATAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCCTCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAGCAAAACAGTCTCAGCGTATTGCCCAAGCGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2779834-2778487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTBO02000001.1 Enterobacter hormaechei strain FDAARGOS_68 scf7180000000002_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2779833 28 100.0 32 ............................ GATCCCCTCTGGTACGGTGGCGCGGGGTAAGT 2779773 28 100.0 32 ............................ TTGTAGCCCATCCTACGCTTCACCTGGTCGCT 2779713 28 100.0 32 ............................ TCAGCCAGCGCGAAGCCAACCGCAGATGATAT 2779653 28 100.0 32 ............................ ATCCGCTTTGAATGACGGAGTAACCATGGAAT 2779593 28 100.0 33 ............................ TGCTGCCGCATCACAGACAACCTCAGGTAAGAA 2779532 28 100.0 32 ............................ GGCTCGGATATCGATTTTTCTGGCATCTACAA 2779472 28 100.0 31 ............................ CATTCAGACTGTCCGCTAATTTTCGCCTTTT 2779413 28 100.0 32 ............................ TTATGCCGAGATATTACAGGCGCTGGCCAATG 2779353 28 100.0 32 ............................ TGCAAAAGCTCCAGAACGCCATGCGAGAACTG 2779293 28 100.0 32 ............................ ACTGGATTCATCGTTCAACTGCTGGCGTGGGA 2779233 28 100.0 32 ............................ CGTCGATCAGATGGCCAGGATGGTTGCTCATG 2779173 28 100.0 31 ............................ CTGTATGGCAAACAAAAAATGAATTTAACTC 2779114 28 96.4 32 ...................C........ GTTTTAACTTTTCCTGGCGCTTTGTGAGCTGG 2779054 28 96.4 32 ............G............... AAGGGCATGAAGCTGCGTCAGGTCCGTATCGG 2778994 28 96.4 32 ............G............... TCGTCGTTACCAGGCAGCCTCTCTTTTCTCCC 2778934 28 96.4 32 ............G............... ATCGAAAATGTAGCAGCTCTGACTGATGAATT 2778874 28 96.4 32 ............G............... TCGAAAACGTAGCAGCTCTGACTGATGAATTT 2778814 28 96.4 32 ............G............... GAAAACCATACTCGCCTGGCTGGATACGCGAT 2778754 28 96.4 32 ............G............... AGTCTCGTTCCATAAATCATCCACTCTTTTAA 2778694 28 92.9 32 ............G.............T. GTTGGCCACGGCAACCTGACCGAAACCGGCAT 2778634 28 100.0 32 ............................ ACGAACGCTTAACATGTTCCATGCCCGCTGGC 2778574 28 100.0 32 ............................ ATTTGTCTTGCTGGATGTTAGTTACTGAGCAC 2778514 28 75.0 0 ......C...........T..A..CTCC | ========== ====== ====== ====== ============================ ================================= ================== 23 28 97.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGCAAACGCAGCCCGTTTGCCGTTGTCTCGGTGCTTATCTGGACGTAGTCAAAACCGAACTCGCAGAATCAATGAGTGATTTCCGGGTGGTTGAATTTGACGACGAGACGGAACGGCTGAAGGAAAAAGAGTGGCTTCTGGAGGATACCGAAACCAAATGCGATTACTGCCGGGCATTAAACCACGTGCTGCTGGTGTCGCATTTTGACCGCGAGATGCTGCCCCATCTGACAGGATTGCTGCATGACATTACACATTCGATGGCGGCAGATGTGGCTGCACCTGAATGTGGAAAGCCTGTAGTTCATATCATTAATTAAGTTTAGTCTCGTGCGTCGGGGAAGGGACTCCGGCGCGGTATGGCGAAACCCTTTTTTCGAGTAGTTCTTTAAGTTATTGATTTTTATTGTGCGAATAAAGGCCGCAGAAAAAAGGGTTTGAGGTAGATATGTTGATTATTTTCTTTTCGAACAATAAGATGGCGAAGATTTCTTCCA # Right flank : CCAAACATTCACTCCAACTATTTTAAAATCCACAATCATCACCACAATCCTCGTTGTATTTTTAATAAACTCAATACTCATTCATCCGACAACCATATTCCCTCACATATATTATTCATAAAAATAATACATTAAATATGTCAGAGATTTTTTATCTCGACACTCCGATAATTATTATTCATTTGATACGCGTCACATTTGTCTTCATCTTATCTCCGCTAACATACCCCGCATTCAACACATTGAAATAAAAAGCACTTGCTATGCCAGCGAACAGCATTACCCCATCCGACTTAAAAACCATTCTTCATTCAAAACGTGCCAATATCTATTACCTGGAGAAATGTCGTATTCAGGTAAATGGTGGACGCGTTGAATATGTCACTCAGGAAGGTAAAGAGTCTTTTTACTGGAATATTCCCATCGCTAATACGACGGCGGTAATGTTGGGAATGGGAACATCCGTTACGCAAATGGCGATGCGGGAGTTCGCGCGAGCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2796006-2795017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTBO02000001.1 Enterobacter hormaechei strain FDAARGOS_68 scf7180000000002_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2796005 28 100.0 32 ............................ TATAGAAAAAATGAGGCAGGGGAATCCTGCTT 2795945 28 100.0 32 ............................ AGCTGCGAAAATCGCAACATCTGGCAGACATA 2795885 28 100.0 32 ............................ GATATTAAATGCGGCGATGAGTCGTTCAGGGT 2795825 28 100.0 32 ............................ TGGGTAATGTTCCAGTTCGGTACAACACCTAA 2795765 28 100.0 32 ............................ GGTGACTATGACGGCGCGGCTGATGAGTTTCT 2795705 28 100.0 32 ............................ GCCAGCACTGACGTTTGGCTGTATGAAGTGGA 2795645 28 96.4 32 ............A............... AGATAATCGTGGCGCATTCACTGAACCACGCT 2795585 28 92.9 32 ..G.........A............... GCCTGCTCAAATACAGTGCGCATGCGTACCTG 2795525 28 92.9 32 ..G.........A............... AGGCGGCAGCGGTCCCTTCTCAGGAACGCTGG 2795465 28 92.9 32 ..G.........A............... CGTTTGAGAACCTTCGCCGCAAGGGCGTAAAC 2795405 28 92.9 32 ..G.........A............... TTAATCTGGCGCTCGCTTAATCCTGTTCTCTC 2795345 28 96.4 32 ..G......................... ATCGTGGTTTTGACTCCCTTTAAGCTGTCGTA 2795285 28 100.0 32 ............................ TTTGATTTGAATGGTAGTGGCTTGCCGATTGG 2795225 28 100.0 33 ............................ CAGGTCTTGTTAATGATGCTGTAGCCCATCTGA 2795164 28 96.4 32 ...........G................ TGGCTGTCGGTGTACGAGTTGGCATCGATAAG 2795104 28 100.0 32 ............................ TTTCCCGATATTCCTCAGCGATCCGCTGCGCC 2795044 28 75.0 0 ............A.......TAGGC.C. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 96.2 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : CAGGAACCTGCACAGACGGCGAGTTCACCCGTAAGCTGCGCTTCGGCACCGGCGGCAAAGGCGGCGACTTCTTCATGGCGGGTGGGCATCCACTCAATAGTTTTCATCTTGTTAAGGCTATCGCTGAGTCCGTTCAGAGAATCGCCAGTGACGCCCCAGATACGCTTTACGCCAGCCTGCTCAAGGGTTTTCGCTATGTATGCAGCCACAGTTTGTTTCATGGTTGTCCGTCTCCTTTTTGTGATATCGCTTACAAGCTTAGAAGAAAGTCGCTGTATTGCCTGCTCAGTATTCTTTATGTACAGGTGGTTTTTCTGCGCGACGCGCCGCCAGCGGGCTGAGGTTGGGGCGGGAGGAAGCGGGTTTGCAGACCCTTTTTTCCTGATGGTGCATAAGTTGTTGATTTTATATGGTTAGGCTGAAGGGGAATAAAAAAGGGGTTGGAGGGAGTTTTTGAGGTATTGGTTTATCAGACAAAGGGATAGGTGTAGATTGTTTCA # Right flank : ATGTAGGCCGGGTAAGCGTAGTGCCACCCGGCAAAAAGCCCGGTGGCACTACGCTTACCGGGCCTACAGGGTTCCAAAGGCAAAAGCGCTGGCCTGCACGGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGGGTTACAAAGGCATATGCGCTGGCCTGCATGGGCAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACAGGAGTTACAAAGGCAAATGAGCTGGCCTGCACGGACAAAAAAGCCCGGTGGCGCTGATGCTTACCGGGCCTACAGGTGAACCACGACAGATTATGCGAGCACAAGATCGCCCTGCGGATGGCACGAACATGCCAGCACATAGCCCTCCGCGATTTCCGCGTCGGTCAGCGTCATGGTGCTGGTGACCGTGTACTCACCGGAAACCACTTTGGTCTTACAGCAACCGCACACCCCGGCGCGACAGGCCGCTGCCACCGGTACGTTGTTGCTTTCCAGTGCTTCAAGCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //