Array 1 92565-93113 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODD01000001.1 Listeria grandensis FSL F6-0971 c1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 92565 29 100.0 36 ............................. GCGGCAGTGCCAGGAACACGGGCCATTAATCCTCTT 92630 29 100.0 36 ............................. TTAGGAACTATCAAGGGGCATGATGATAATGCGGCA 92695 29 100.0 36 ............................. ATATGAGCTTGATTTTTTCCACCTCAATGTTTTTGC 92760 29 100.0 36 ............................. ACTGGACTTTTATCCATCAATTTCACGCCCGCGCCT 92825 29 100.0 38 ............................. TGCCTCCAAATACGATGAGACAACTTAAACTTTATTGT 92892 29 100.0 36 ............................. CAGGCGGGCACCTGCGCCCTCGCGCATCCCTAATAA 92957 29 100.0 34 ............................. CCGACTTGGTTCTACTGCTCAGATGGCGGATACA 93020 29 100.0 36 ............................. TAAATTACTTGACCTTTGTAAACTACTGTTGAACCT 93085 29 86.2 0 ..............A....A.......GA | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 98.5 36 GTTTTATCTAAGTATTGTGTAATGTAAAT # Left flank : GGTAAATGGGCTGGTATGTGTGGCGAGATGGCTGGCGATCAAACAGCTGTACCGTTGTTGCTTGGAATGGGCTTAGATGAGTTCTCTATGAGCGCGTCAAGCATCCTGAAATCACGTTCTCTAATCAAACGCTTAGATCGTACAGAGATGGCGAAATTAGCAGACGAAGCATTACAACAAGCAACAGAAGAAGAAGTTGTAGCGCTAGTTAACAAATATACTGCTGAGTAATCAGAGTAATAGAATGAGTGAAGAAAAACCTGGGAGATTCCTCAGGTTTTTCTTTTTAGTATAAGACCTGTTGAGAAAATCTGTCGACCTCCAGTAGCGTAAAAATTACAGGAGATCGACAGATTTTTGTTAATGACTGGTACAACAGCGATTAGGCTCTTTTCATAAAATATTTTTGTAAAATCAAGCGCTAGAAATCCCGATTTTGTCATCGGTCGACAGATTAGCCCCTTTGAGGTATGATGGGAGTGGGGCTGAAATGGGTACGG # Right flank : AGGATGCTTCAAATAATTATCTGGAATATATAGAATTTTCATCCAATGAATCCAGAAAATAAATGCGCCTTCAAAATCCACAACTACTCCAATTTGCATTTTCTTGTAACCACGGGTAAACTTTGTTCTATAGACAAGTGACCAGTCGAAGGAGGAGTTTTGGAATGAATAAAATTGGATTTATCGGTGTTGGTGTGATGGGTGCGAGTATGGTGCAGAATTTGATGAAGGCGGGTTTCGAAGTACATATTTATACGCGGACGAAATCGAAGGCGGGTGCTGTTATCGAAGCTGGTGCAATCTGGCATGATACGCCGCAAGAGCTAGCGCCGCATGTGGACGCACTAATTACGATGGTTGGATATCCAACAGATGTGGAGCAGCTTTACTTGGCTGAAGACGGGCTTTTAACCACGCTTCGCTCAGGGAGTTTTGCGATAGATATGACGACATCTTCTCCAAACCTTGCGAAGCAGATCGCAGAAGATGCGAAGGAAGCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 7438-7021 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODD01000011.1 Listeria grandensis FSL F6-0971 c11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 7437 29 100.0 36 ............................. GTATTTAATTTCATCAAGAAAATTGCAGATTTAACA 7372 29 100.0 36 ............................. AAAATAGAATCAGGTGCATTGCGGAACTCTAAACTA 7307 29 100.0 35 ............................. GTGGATACAGCAAGGAACATTATTAAAAGACTCAT 7243 29 100.0 35 ............................. ATACGTGTATATAGCTTGCTTACATCGCTTCTCAA 7179 29 100.0 36 ............................. ATCGCTGAACTAGATTCAACGATGATTGCGATGTAT 7114 29 100.0 36 ............................. CTACTTGGCTGTAAGTTTGCCAATCCCTCTGCAATC 7049 29 72.4 0 ............C.A.T.A.G..CC.G.. | ========== ====== ====== ====== ============================= ==================================== ================== 7 29 96.1 36 GTTTTATCTAAGTATTGTGTAATGTAAAT # Left flank : CGTTTTCCGCAAGTATTGTGTAGTCTAAGAAAGGAAGCAAAATAGCATCAATTTGGTAATCTAAATGGTGGGATAGTTATCAAAAAAATGCAAACATAGTCAAAGGTGGGATCGATATGAAAAAAGGGACGCCGGCTTGAACAGATCTGTTTACAATCCTAATTTATAAAATAGTACTATTTTCCTAGCGATCATCTCATGTATTATTTTTGTATTTTCAAGAAAAAAAGGCAAATAAAGTCGTAAAAATTGGCACGAATCAATATAAAAATAATAGAATCCATAAAGGGATAAATAGGCTCATCGAAATCTGTCGACCTCTAGTAGCGTAAAAACTACAGGAGATCGACAGATTTTGTTTAACTACTGGTATAAATGAGGTTAGGAAGGTTTTTTCGAATATTTCTACAGACTGAGACTGCTAAAAATTATGGCTTTGTTGTCGATCGACAGATTAGCCCCTTTGAGGTATGATGGGAGTAGGGCTGAAATGGGTATGG # Right flank : ATCCTCAAAACCGCGATTTTTCACAACAACAATCTTCATCAACCAAAATTCTGTCGCTCTCAGTAACTCAATCGTTACCGCAGAACGGCAGATTTTTTTATACCTGCTCCTCGCATAAAATTTGACTTGGAGTGCACTCCAATCTTTATACTGTTAGATAAAGGAGGAGGTAGGAATGACTGCTAGTAATGTGGCACAAGATAATCAAGATTACTTATTTCCAAATCAACAAATGAAACTAAGACTGACGGCGCTAATCATGAGGCGACGCGTGAGTGAATACAAAAGGATGCTAAACATGGCGCTTCAGATCGGCATAAAACCGGAAGAGGTGAAAGAACTTATCTATCAGGCGGCACCACATATTGGTCTAGAGCGGGTTTTCGATTTTTCGCAAATAACAAATGATATACTGGTAGCAAACGGTTTACTACGAGTGAGCCAGTGCACACTTGAAAATGGATACGGGGGAAAGTAAATTGAAGAAAACACTATATTTA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 8424-8074 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODD01000011.1 Listeria grandensis FSL F6-0971 c11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 8423 29 100.0 34 ............................. CATTTGAGCTTGTCTATGTGACACTGCACGTTTA 8360 29 100.0 34 ............................. ATCGTTAAATCTTGTATTAACCCTTAATTTTTCA 8297 29 100.0 36 ............................. ACCACAACGGCAAGGCATTCTCCCGCTCTGCGAGGA 8232 29 100.0 36 ............................. TGCCTTCTTTTGTGATCACAAACACAGAACCGAATT 8167 29 100.0 36 ............................. TATGCAACTAAAACGCCTTTATCAACACCTGCGCCC 8102 29 93.1 0 ................C..T......... | ========== ====== ====== ====== ============================= ==================================== ================== 6 29 98.9 35 GTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : ACCTTGTTGAAGTTCCCAATTCCGAGAAAATTTGGGATGCCGAAATCGTGCTAATCGCAATTGGATTCGCCGGTGCGACCCCATCCATTTTCAAAGATTTCAAAGTGGCCAAAACAAACCGCCACACCATCGAGGCCGCCAAAGGATTTTACCGTACCGACGTCGAAGGCATCTTCGCATGCGGCGACGCAAGATATGGCCAAAGCCTCGTCGTAACCGCGATCAACGAAGGACGCGAAGCCGCCCGAGAAGTCGATTTCTACCTAATGGGCGAAACATTCCTACCATAAAAAAACAAGAAGGCTCAAAAATCTGTCGACCCCCAGTAGCGCAAAAACTACCGGTGATCGACAGATTTTCTTTATCGGTTGGTATGAATAGGATTAGACCGGTTTTGCAAAGAACGAGAGCAAGGTTAAGCTAACGAAAAAACGATTTTGTTGTCGATCGACAGATTAGGGCTCTTGAGGTATGATGGGAGTAGGACTAAAAAGGCACGG # Right flank : CCTATACGAGTTAGCAGAAGGTATAGCGCTACCATTAGGCTTTCTTAGCTATCGGGTTCATTCAACGTAAACCGAGAAGATACAAATGATACTATAACATACAAATAAGAATAAAATACCTATAATCTTTTTGTTGCGTTTTCCGCAAGTATTGTGTAGTCTAAGAAAGGAAGCAAAATAGCATCAATTTGGTAATCTAAATGGTGGGATAGTTATCAAAAAAATGCAAACATAGTCAAAGGTGGGATCGATATGAAAAAAGGGACGCCGGCTTGAACAGATCTGTTTACAATCCTAATTTATAAAATAGTACTATTTTCCTAGCGATCATCTCATGTATTATTTTTGTATTTTCAAGAAAAAAAGGCAAATAAAGTCGTAAAAATTGGCACGAATCAATATAAAAATAATAGAATCCATAAAGGGATAAATAGGCTCATCGAAATCTGTCGACCTCTAGTAGCGTAAAAACTACAGGAGATCGACAGATTTTGTTTAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 136505-135093 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODD01000006.1 Listeria grandensis FSL F6-0971 c6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 136504 30 90.0 34 .....T....A.T................. GCTTAGGGAAAGCAACCGTTGTTTATGCTAAAGA G,G,C,G [136490,136496,136499,136502] 136436 30 100.0 38 .............................. GTGAAACCAGTATTTCGGAACAATGAATTAGTAGCACG 136368 30 100.0 36 .............................. GTTTTTGATGATGGCAAGCGCTTTTATCGAATTTAA 136302 30 100.0 35 .............................. GGAATAAGGAGTGGACAAGATGGCGGAAGTTAGTT 136237 30 100.0 35 .............................. CTTTTAGAAAGCCAGGAAAGCGTGATTAGTCTTTT 136172 30 100.0 34 .............................. AACGGGGTAGGCTAACAATCATTCACTGGATTGT 136108 30 100.0 34 .............................. TGGAAATTATCGCGGATGTTATGCAAAATAATCT 136044 30 100.0 36 .............................. GCTGATGCTTATTCTAGCGCCTTTGGCAGCGGGGAT 135978 30 100.0 36 .............................. AAAAAAAGGCTCGCCAGATACACCAATTATTTATTT 135912 30 100.0 36 .............................. AGTGCCAACGATGTAAGAAGAAGCGTCGGTATCGTA 135846 30 100.0 34 .............................. ATGGTGCTGATCCATCTGTACCTGTGATTTATTT 135782 30 100.0 37 .............................. AAAGATACTAGATGGCGAGGCGTTTGTAGATTACGAA 135715 30 100.0 36 .............................. TTCGTAATATAACCAGTTCCCTGCTGTTTTAGCTGA 135649 30 100.0 35 .............................. CTAATGATGTCGTATTAATAGACGAAACGATAAAT 135584 30 100.0 36 .............................. ATGTTACAGCGAGCGCAGACACCGTTACAAAAAAGT 135518 30 100.0 35 .............................. CTTTTTGGGACAAATTCAAAGTTTGCAATTTAAGG 135453 30 100.0 37 .............................. TTTATTTATCGCCTTAAAACTGACAGACGTTATTGAT 135386 30 100.0 35 .............................. ATATCTACGGTGAAATCAGCCGCATTTTTTTGTTT 135321 30 100.0 36 .............................. GATCCATCATCGCGGACAAAATAACCCCCTGGTAAT 135255 30 100.0 37 .............................. CGGATCCATCGAGAATTTAATGGCAAATGAAGAATAC 135188 30 100.0 36 .............................. ACCCTAGTTACGCGGAACAAATAGCGACATAACATA 135122 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.5 36 ATTTACATTTCACATTACTTAGATAAAAAC # Left flank : ATCATTGGCTACCCCCTTCACTCCCTATCTTCCGAATTTAAACCCAGAAAGAAAATCGAGGGGACATTGCCGTACGAATCAGATTTTGCCGCCGACATAATTTTGGATGATTTATTAAAAGAAACGATTGCTTTTTTTCATTGCTTAGAGCAGGTTTCACAGTCTAAAATAGATGGAAACACATTATTATATTGCTATGATACGAAAGAATTAGGGCCAGAAATCCATACCGATATTTCATTCGAGTCTGACGTTCCTAACCTGTTCTTTATTGGTGATTGCTCCGGAGTCACGCACTCACTGTCACACGCAGCTTGCAGTGGTCTATATTTAGGCAAAGCTCTACGCGACTAAAAAGCGGGAAGCGGGAAACGGGACACGAGAAAAACCACCTGGCTAAGAGACACTGTATGTCTTGGCTGGGTGTTTTTTGATTGCTTATGTTTCACTCGTTTTTCATATTGCTTGGAGAAACGTAGGTTTAAAGCGAATCCTGCCAC # Right flank : CCGTGCTATTTCGAGCCTACTCCCATCATACCTCAAGACACCTAATCTGTCGACCTCCACCAAAAAACAAATTTCGCACTACAAATTCATCCTACCTTCCCCCTCTAAATCGCGAAACCCATTCTACCCCAACACTTTATCAAAATCTGTCGATCCCCCAGTGTTTTTACGCTACTGGAGGTCGACAGATTTTTTCACCCCTTAGAAAAAGTTCGACGTTTTTTCATCTGCTGCTCCCCAAAACTCCTTCTCCAACCATCTTTCCTGCCTACTAGAGAACACAATCACCGAATCTTCTTCCTCACGAATGTATTGATCTAACTCCATCCGTAATTTCACTAACAACGGTGGCGTGATTTCCCCCTCAAAAACTGATTTTTGAACATGCGTTAAGTATTTTTTACAGATTTTTAAAAAATGTTTCGCGATACTTTTGCGCCACCATTGTCCTGTGCTATATCGTAAATCAAGATAATATACATCGCCATTCACCACCAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //