Array 1 210444-209439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERTV010000008.1 Salmonella enterica subsp. enterica serovar Ceyco strain FC2085 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210443 29 96.6 32 ............................A TGATCGGCATCGATTACATGGGGCTGGTTAAA 210382 29 100.0 32 ............................. CCCACCCTCTTTTCTGATTACCACCCGGCAGG 210321 29 100.0 32 ............................. TCAACAGATAAATTTCTATCTTTACAATTATA 210260 29 100.0 32 ............................. TGCTTGGTGTCAGGGACGGTGGTGATGACTGT 210199 29 100.0 32 ............................. CGTCGGAGGCATGAGCACATCTCAAGACTCAG 210138 29 100.0 32 ............................. CGCTCATTATTTACCCCATCCATTTTTTGCGG 210077 29 96.6 32 ............................T CTGATTCGCTCGCATTTTTCGATGATGTATTA 210016 29 100.0 32 ............................. AGTAATCTCAGCATCCGTTCTCTCACATCGTC 209955 29 100.0 32 ............................. CAACAAACGCCACATTTAATTATTGGCTTAAT 209894 29 100.0 32 ............................. ACCCCCTAAAATTTTCCCTTAACGCCGGGTCG 209833 29 100.0 32 ............................. TTAACCGCATTGCGTAATTCGGCGCGGTTTCT 209772 29 100.0 32 ............................. CTGCTTACCTTAGTGCAATGCAGGACAGTATT 209711 29 100.0 32 ............................. CGGCTTAATTCTTTCGCATATTGCGTCAAAGT 209650 29 100.0 32 ............................. AAGGAGGTTACCGATGATCCGCTGGCAGATGA 209589 29 100.0 32 ............................. GCCCGCAACCGGATGCTGTCACGTGAGCGTGA 209528 29 100.0 32 ............................. CCGAACTGGAAATGGTGATCGCCAGTGCTGAG 209467 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACCGTATTACGGATCCAACAAATGCACTGTCCGGTTGCCACAACGCGATAAATAATGTCCAGTGCTTCCTGGCGCTGCTGTATCCAATTAACGGCTACAGTCCGTTGGACTTCGGGGCGTGTGGCCAGTGGTTGCTCCAACAGACCGGAGGAAGTGAGGTGGCTTAACCATGGATAACCTGCGTTATCGCTACCACCAGCGCTCATAAATCCCGCGCCATTGCTAAACGCATTAAGTAATTTTTCTCGTAAAGCGGCGGGAAGAGTGGCGCTCAGAATAATAGCGCTACCGCCCTGGGCGGCATGAAAGCGCAATAAACCTTCCAGCAATTTCACCATATAGCCATCATAGGCGTGCACTTCATCCAGCAGCAGGATTTTGTCGCGCATCCCCAGCAATCGGAGCGATTGATGGCGAAAAGGCATCACCGCCATTAAGAGTTGATCCAGCGTACCTACGCCGACTTCCGCCAGCAGCGCTTTTTTGCGCGAGTCGGCAAA # Right flank : GAATGACCGCTGGTTTTTCTCTAATTATGGCTATATCACTAAAGCGGCAGCGACTGCTGAGAGATTGAGATTAATTAACCCGAAGTTCTATAATCTATTGTACATGAACCATCTGGAAATATTTTTCTTTCTTTTTGATGGCTATCATTCCAAATGATATATATTTGGGTGACTATGCATTTACTACCGAAGATGAGGCAATGAGGTTTTTAAAGAGGTTAATTCAATGAGTAATTTTCTTAAATGGATAGTCAGGACCTTATTAAAGGACATCATCGGTTTTATGCTACCGACCGTGATTGTCATCGGTGTTATGATTATCGTGGTAGTGAATTTTTCTGAATATTCAGGAATGTTATTTTTCCCTATAGTTGTTATTGCCATCTATCTTACGGGGAAATTAATTAAATAGTTTTCAATGAAAAGTTGTGTTATTCAATTAACATTTGAAATACTTATTATTAACTCTATTCCTGATCCGACAACAATCACTGGTGTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 222135-220701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERTV010000008.1 Salmonella enterica subsp. enterica serovar Ceyco strain FC2085 8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 222134 29 96.6 32 ............................T CGAAGGAGTCGAAATGACAGACCCGAAGTGGA 222073 29 100.0 32 ............................. ATGAATAAATGAGCAATTTAGAATCTGCATTA 222012 29 100.0 32 ............................. TCGAATACGTTGCTAACAGCGTGATTGAACCC 221951 29 100.0 32 ............................. AATACATCCCTGTAAATGCGCTGGCTAATTCT 221890 29 100.0 32 ............................. TTAATATCCGTCACTGGTATATTTACCTCCCC 221829 29 100.0 32 ............................. CCAACAATTGATTCTGGATTATCCATTGAACG 221768 29 100.0 32 ............................. TTATCGAGCATTACAATACTATTATGGCGGTC 221707 29 100.0 32 ............................. AGGTGGACTGGTGTCCGCTGGTCAAGGGGGGA 221646 29 100.0 32 ............................. TAAACTACGCTGGAACTCGTCAGCCGTTGTGC 221585 29 100.0 32 ............................. ATTGTTATCGCTTCTGAATATTGTAGCGATGC 221524 29 100.0 32 ............................. GTTCGAACTTCAACCATTGAAAGCAAAATCAC 221463 29 100.0 32 ............................. TGGGCTGTATATCACCTGCTTAATCCCGGCGT 221402 29 100.0 33 ............................. GGTTCATGGATCGCGCTATTGAAGACGCGAAAG 221340 29 100.0 32 ............................. CCTGGCAGCAGCAAACCGAAGACTGGGCCGCA 221279 29 96.6 32 ............T................ CCAATCCCCGCTTACGTGGGGAACGATTAAAT 221218 29 96.6 32 ............T................ GTTTGCCAGACGCGCCAGCATACGAGCTGTTT 221157 29 96.6 32 ............T................ GCGATCTGAGGGTGGCCTACGCGTTTTTCTCG 221096 29 93.1 32 ............T...............A AAAATAAAATTTCCATAGTGATTAATTATTAT 221035 29 96.6 32 ............T................ TAGAAGATTATGACAAATTGTCGATTTTCTAA 220974 29 93.1 32 ........T...T................ GTCAACGAGGGTTTAAATTGGTGGTGTATTGG 220913 29 96.6 33 ............T................ TGCCTGTCAGCCTGGCTCATTTGCGCTCCCCGC 220851 29 96.6 32 ............T................ AATCAGCAAGAAATTTCCCAATATCGATTTCA 220790 29 100.0 32 ............................. GATTCATCAAGCGCGACAACGCTCGTTTTATC 220729 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATGAAATCAAGCATCCTGTTGGGCGAGTGCGTGATATTGAGGCACTGGATGAATTGTTAGCCACGTTGAGCGATGATAAACCACGCGTAATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGTATTAATCTTACGGACGGCCTGTCGTTGCCGTCAATGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGAGGAGTGTATAAAAGCACGGATAAATTTTTCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTTAAAGGAAAAATCATTCTATGAAATTTTTTGTAGCAAAATCAGGAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAATTCATAAACAATGATATACATTTAGT # Right flank : CTATATCCACAAGGGCTGGATTTTCTTTATTTCCTTATCGAGCCGATTGCAGAACCGTTTGTTGAAGGATTAACCATACTTGAAAAATCAGGGCCAGCTGATTTCTCATATTTGCTGGAGATGATAGATCATGAAATGCAACAGGCAAACAGCTAAGAAAATAGCATGTAAGATTTATTATGAGTTTTTCGGCTATATAGAAGAATTGCTCTATACGCTGAGCGTGTTGATATGCCTTTTCTCCTTGTTTATTTTCGACACATGGACAGGGCGAGTCTTATGTATTGTTTTATCAATCGGAGCAACATATTTACTGACAAAGGTCTTGCCCAAGGATGAATAACAACATGGAAAAACGTTTTCAACCCCATCAACATTCTGGATACGTTTTGTAAACAGTACCGCTCAGTCATGGGCAGAATTGAACTGGCCCGCCCAATGAGGGGGACGCATTTTCCGAACTGGCCCTCCTGGTGTTTTCTGCCCTTAGTCATCTGGCA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //