Array 1 2058720-2060028 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085959.1 Corynebacterium diphtheriae strain FDAARGOS_1553 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2058720 28 96.4 33 .................A.......... CGCCCCGGTCATCCGTAAGCACCTCAAAGACGC 2058781 28 96.4 33 .................A.......... CTGAAATCTGAGGTTGCGGCGCTGAAATCGCAG 2058842 28 96.4 33 .................A.......... GCGATTGAAGCTGAGCGGCGGTGCCGCCCGCGT 2058903 28 96.4 33 .................A.......... TGCCAAATTCCAACAAAAATATACCTGGATCGC 2058964 28 96.4 33 .................A.......... CCGGAGTCCTTTCCCCATACGACCTCGGCGGCT 2059025 28 96.4 33 .................A.......... TAAATTGGGTGCGGTCGAGCATTTTTTCCGTGC 2059086 28 96.4 33 .................A.......... TTTCGCTGGGATCGATTCGGCGACCTTCCACGA 2059147 28 96.4 33 .................A.......... CCCCGGCATCATCGACAAAGATACTGGCCGCGA 2059208 28 96.4 33 .................A.......... CCGCTAAAGCCGATCTCCGCGACTGGGCTATGA 2059269 28 100.0 33 ............................ CGTCGAGCCGACCAATTCGCCGCCCAAATACTC 2059330 28 100.0 33 ............................ CTCTGGTATAAAACCAGCCCCAGTTAGTGCAGT 2059391 28 100.0 33 ............................ GTTCTGGCATTCGACGATACAACATTGTGCACA 2059452 28 100.0 33 ............................ GTTCTGGCATTCGACGATACAACATTGTGCACA 2059513 28 96.4 33 ......................G..... CTACGAGAGCATTAAGGGGGGCTATTTCTTTAC 2059574 28 100.0 33 ............................ CGAACTCGAGGACATGGAGGCCACGCGATGAAA 2059635 28 100.0 33 ............................ CCGTGAAGCAGTCACCAAGAACATCGAGAAGTT 2059696 28 100.0 33 ............................ CAGTCCCCAGCGGCGGCAATTATCCCAGTTCCG 2059757 28 100.0 33 ............................ GTATGAGCTGATTTACCCTGATGAAGATTTCTT 2059818 28 100.0 33 ............................ CGCCGGTAGGGTATGCGACCGCCGCGCAGGTCA 2059879 28 100.0 33 ............................ GTGGGGTTGATTTGATTATACCGCATGGTGCGT 2059940 28 100.0 33 ............................ GTCATAATCAGCACTGTCAATCCTCATGTATTG 2060001 28 89.3 0 ...........GTC.............. | Deletion [2060054] ========== ====== ====== ====== ============================ ================================= ================== 22 28 97.9 33 GTTTTCCCCGCACTAGCGGGGATGAGCC # Left flank : CTTACTTGGAAAGAAACTGAGGCATTGGCTGGAAACACAGTGCGCCTGCCAACCCGAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGATTAAAGGCCAAGTTGCGTTGCTTTTCGACGAAAGAGGAGAGGCTCGTGTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAAGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAAGAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CCAGGGACTTTGAGAACTGGACCGCCGTGATTCCCTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAATTTTGAAAAAACTAACTTTTAATATCTATAGAGTGTATTCTGTGGAAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGATGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCGGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGCTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCGTCTTGCTCGAAAAGGGAAAGATCA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACTAGCGGGGATGAGCC # Alternate repeat : GTTTTCCCCGCACTAGCAGGGATGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //