Array 1 102620-100944 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOG01000052.1 Escherichia coli strain KG-15 NODE_7_length_191270_cov_8.4899_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102619 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 102558 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 102497 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 102436 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 102375 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 102314 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 102253 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 102192 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 102131 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 102070 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 102009 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 101948 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 101887 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 101826 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 101765 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 101704 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 101643 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 101582 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 101521 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 101460 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 101399 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 101338 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 101277 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 101216 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 101155 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 101094 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 101033 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 100972 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129568-128319 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVOG01000052.1 Escherichia coli strain KG-15 NODE_7_length_191270_cov_8.4899_ID_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129567 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 129506 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 129445 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 129384 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 129323 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 129262 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 129201 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 129140 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 129079 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 129018 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 128957 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 128896 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 128835 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 128774 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 128713 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 128652 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 128591 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 128530 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 128469 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 128408 29 93.1 32 .A........T.................. GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 128347 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //