Array 1 432588-435483 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUV01000002.1 Salmonella enterica strain CFSAN071970 CFSAN071970_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 432588 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 432649 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 432710 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 432771 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 432832 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 432893 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 432954 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 433015 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 433076 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 433137 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 433198 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 433259 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 433320 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 433381 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 433442 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 433503 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 433564 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 433625 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 433686 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 433747 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 433808 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 433869 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 433930 29 100.0 32 ............................. GCACCGGCACTGCGGTCAGCACCGCCAATATG 433991 29 100.0 32 ............................. GCAGTCCACGACTACAGCCCCGGGCAGCGGTT 434052 29 100.0 32 ............................. GGGGGCCTGGTCGGGAACGTAGATATCCCGAA 434113 29 100.0 32 ............................. TGAAATTGTCGTGCCAGCGCCACCTTGATGAT 434174 29 100.0 32 ............................. CTACGCACGCTGATTAAGGTCACGTGCGGTTA 434235 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 434296 29 100.0 32 ............................. ACGATAGAGATCTGGCAAAAGGCTGTTATTGC 434357 29 100.0 32 ............................. GGACTGATAAATAATTCATACGTTGAAACGGG 434418 29 100.0 33 ............................. ATAGCGTATCGTGGAAATCTGTAGCAGACGAGC 434480 29 100.0 32 ............................. AAATTTTCAGCATCGCCATCTGTAGGCTGCCA 434541 29 100.0 32 ............................. AGTGAGGAATAGCGCGGGCTGGGGATGGTATT 434602 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 434663 29 100.0 32 ............................. AGGGCGTCAGCCTCGGACGAATCGATAACAAT 434724 29 100.0 32 ............................. GCAGGCGTTCAGGCGCTAATTAGCTCTACCGA 434785 29 100.0 32 ............................. AAATGATTAAGGTGCTAAAAGCGCTTAATAGT 434846 29 100.0 32 ............................. TGGTTAATCGCGGCGCCACGATATCAACAGGA 434907 29 100.0 32 ............................. ACTCGCGAATAATCGGAAACCAGCCACCATCC 434968 29 100.0 32 ............................. GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC 435029 29 100.0 32 ............................. GAAAAGGCAGCTCCAGTCTGGCACCTGCATGA 435090 29 100.0 32 ............................. GATGAAAGAAGCGTTAAACGCCTGCTGGACCC 435151 29 100.0 32 ............................. TTTTTCGGCTGTATCCAGCGTTATCCCTTGTT 435212 29 100.0 32 ............................. TTTTTCGGCTGTATCCAGCGTTATCCCTTGTT 435273 29 100.0 32 ............................. GTAGTGACTTCCGGCGACACAGATCCTGTTAA 435334 29 100.0 32 ............................. ACCAACCCCCGATACCCGCGAAGAAGTGGCAC 435395 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 435456 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 452095-453710 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUV01000002.1 Salmonella enterica strain CFSAN071970 CFSAN071970_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 452095 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 452156 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 452217 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 452278 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 452339 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 452400 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 452461 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 452522 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 452583 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 452644 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 452705 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 452766 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 452827 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 452888 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 452949 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 453010 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 453071 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 453132 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 453193 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 453254 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 453315 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 453376 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 453437 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 453498 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 453559 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 453620 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 453681 29 93.1 0 A...........T................ | A [453707] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //