Array 1 79964-89044 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019780.1 Methanosarcina mazei strain TMA chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 79964 37 100.0 35 ..................................... CCCCAGCAGAAGGCGACATTTCAACGGAAACTATA 80036 37 100.0 35 ..................................... TGCACTTGCTTCTGAATATCCAGACAAAACATCGT 80108 37 100.0 36 ..................................... AAATCCTTTGGTTCGCTAGGATTCGGTTCTTTCTTT 80181 37 100.0 34 ..................................... AATATAACTTGCGCGTATTATAGTATAGACCTAA 80252 37 100.0 36 ..................................... TATGAGTGGAGCGTGGCAGGTATATGCCCTGATGGA 80325 37 100.0 36 ..................................... TTTGGGACTTTTTGCAACAGTAGTAATGATGGAATT 80398 37 100.0 35 ..................................... ATTTTTAGTAAACTCGACAGAGATTAAACTATGAA 80470 37 100.0 34 ..................................... TGGTCCAATTTGGATCCGGAACCGAAACTCTAAT 80541 37 100.0 35 ..................................... TTTGCGATTGCCACTACAAGAGATGCTGCGGTCAT 80613 37 100.0 35 ..................................... GGAAGTCCTCTTTTGGGAATTGCTTTTTGAATGCC 80685 37 100.0 35 ..................................... TCTGTTCTAACTGTGTAACTTACAATAATTATTTC 80757 37 100.0 35 ..................................... TATTTTCCTCAGCTACTCTTGCCAGCGCGGGGACC 80829 37 100.0 35 ..................................... CAGTTGTTCGCACGGATCAGAGGGACCATCTTGTT 80901 37 100.0 35 ..................................... CTCTTCGTACCACCGTTCAAGCCTCCTGCTTCTCT 80973 37 100.0 34 ..................................... CTATACTCGATTCTTGATCTTTTTATCCATTGTG 81044 37 100.0 36 ..................................... CAAAGCTTAACTCTACTTTGGAACTCTGTAGATGGG 81117 37 100.0 35 ..................................... AACAGGATTTGCAGAAATGCAGGAAAGAGAACCGA 81189 37 100.0 37 ..................................... ATGCTCATGTCCGATTCAGTAGCCGCCCTAATGCCCA 81263 37 100.0 35 ..................................... ATATCGTCCTCATAAACCGTGAAAGTTGCTTTAGG 81335 37 100.0 36 ..................................... TATTACCACATAATATATTATTACAAGAAAAATATG 81408 37 100.0 35 ..................................... TATATTTTATCTGCAAAATATATCTTTACCGATTC 81480 37 100.0 34 ..................................... CTGAATTTTTGAGTAAAATCTTCTCTCTTGTTAG 81551 37 100.0 35 ..................................... CAGAAATATATTCGCGTTGCTGAGGAATTGAAAAA 81623 37 100.0 34 ..................................... CAGAAATATATTCGCGTTGCTGAGGAATTGAAAA 81694 37 100.0 34 ..................................... ATCTCTTGCTCTGTGAGAGTTTCATACCGGAAGT 81765 37 100.0 35 ..................................... TGAAATACGCTAGCGGTATGCGTAGATATTGCCCA 81837 37 100.0 36 ..................................... CCCTCTCTCCTACTTACACTCTGTCCCTCACTCATT 81910 37 100.0 38 ..................................... TTTCACAAATGAAAGACCAATAAAATGGATTGGAAAGG 81985 37 100.0 34 ..................................... TAGTTAACTATTGTAAAAGGGAAAACGAAAAGGG 82056 37 100.0 37 ..................................... TTGGGGGTAGGGGTTGGAATCCCTCTTCCTGGGACTC 82130 37 100.0 35 ..................................... CTCTAACTATATCTATACATCTGTGGAGTAGAAAC 82202 37 100.0 36 ..................................... TCTGAGGTAGACGTTTCAGTAATAATGGAGTCATAA 82275 37 100.0 36 ..................................... CAAATACTCATAGGGTGCTCGGTGTAAACAAGTCTA 82348 37 100.0 35 ..................................... CATATATGGAAGTAAAAACGAGTGCAACGATAGGG 82420 37 100.0 37 ..................................... AATACTCCTTTGTTGTGCTCTCATTTACCCCGGCCTT 82494 37 100.0 37 ..................................... CTGCAGTATTCTTTCTGAATATTGTCAGTATAGAAGA 82568 37 100.0 36 ..................................... CATTTTCTTTTCTCTTTTCCTTCTGTGCTCTCTATA 82641 37 100.0 36 ..................................... TAAAGAGATATTATGAAAACCGATACCCATATACCC 82714 37 100.0 36 ..................................... CGTCATGGGGTACAGCAATCATAGACGAGGCGCCGA 82787 37 100.0 35 ..................................... ATTCAACTGATGAAGAGCACAAAATAATTAAAGGG 82859 37 100.0 36 ..................................... CCAGATCATGTATTCAGTGCTTGATTCAATCCAACT 82932 37 100.0 36 ..................................... TTTTCTCAATTTCCCCGGTGACAACTTCTATAAGTT 83005 37 100.0 34 ..................................... TATACATCAGTCGCTTATGCAGACGACCTTAATA 83076 37 100.0 36 ..................................... AGAATTCTGAAGAAATGACAAACGGAGCCTTTTGAG 83149 37 100.0 35 ..................................... AACCGAACATAGGACCGTCAAGCACTACAGGGTTA 83221 37 100.0 36 ..................................... CTGCTTTCGTTTTCTCTTTTTTCCTCCTGGCTCCCC 83294 37 100.0 38 ..................................... ATCATTCTGATGATGTCGATGTATCAACCGGAGATATT 83369 37 100.0 34 ..................................... ACAAGTCCGTGGAAAAATCAATTTTTCTCTGGAT 83440 37 100.0 38 ..................................... ATGGAAGTCGATGAAGGAATTAGGGTAAATCCTGAATT 83515 37 100.0 36 ..................................... TTATGATGAGAGGTATGAAGAACGCATTGAAGAAAA 83588 37 100.0 33 ..................................... TAATAATCGTGTAGTCCGCCCCGGTCACGAAGG 83658 37 100.0 34 ..................................... AGGAAATAAAAATAGAATCGTGAGCCTGAGAATA 83729 37 100.0 36 ..................................... TATTTCTGCTTGAATAGCTCATTCAGAATGTACGCC 83802 37 100.0 36 ..................................... TAAGTGAATTTGGAGTAGTTGTATCGGTCATTAGAA 83875 37 100.0 35 ..................................... TTTTTTCGTCCATCCATTGGTTCCACATTTTCACA 83947 37 100.0 36 ..................................... AAAATGATACTCAATTTTGGTCTGTATAATATATAT 84020 37 100.0 36 ..................................... AATATTTTCTTCGCCCTAAATTCAAAAAGGCGATTA 84093 37 100.0 36 ..................................... AGGTCATCTTCTCTAATGTCCGCTTTTTAAGGTCAT 84166 37 100.0 37 ..................................... TAACTAATTTTGCCCGAACCTTATTAAAATTCGTCCG 84240 37 100.0 36 ..................................... GAGAACCTGAGAGGAAGACAACCGGAGTTTCTTTAT 84313 37 100.0 35 ..................................... TTCAAAAGGGGTACGGATACAAAGACGAACTTCAT 84385 37 100.0 34 ..................................... TGTAGTGTAGCGGATGTCCGGGCACATGTGGACC 84456 37 100.0 35 ..................................... ACGGTCTTGGGCAAGCAATCACCAGAATAAACATG 84528 37 100.0 34 ..................................... TCTTGAGCGAGGGCGTTTCCAACGTCCACCTGTT 84599 37 100.0 36 ..................................... CAGGAGATGCTACAGCAGAAATTAAACTCGATGATT 84672 37 100.0 36 ..................................... TAGGTAATCCCGGCATGAAGCCCACACTCTGAAATA 84745 37 100.0 34 ..................................... CTGACCATATGTTTGCTCATAATGGGAGTTCGGG 84816 37 100.0 36 ..................................... GTGGATATAGAGTCTGAAAAATAATCATGTTGCTGA 84889 37 100.0 36 ..................................... AAGTCCTCTGTTGTTCGTATATGCTCCCGCGAAAGT 84962 37 100.0 35 ..................................... TGGTTGACGTATGCGGTTCTACCAGGAACATAATA 85034 37 100.0 33 ..................................... ATTAATCCCCCTTCTCCCTTCAGCTTGAACAGA 85104 37 100.0 35 ..................................... TTTCGGCATCTTTGATACTCATCTCAAGAAGAACA 85176 37 100.0 37 ..................................... TATACATCATCAAATAATTAACAGTGATAAAAACATT 85250 37 100.0 36 ..................................... TGTAATTGTCATGGATCAGGACATTATCACAATTAT 85323 37 100.0 36 ..................................... AGAATTCGATTCAGGACAACATGGTATAATATCGAA 85396 37 100.0 36 ..................................... TCATTAGCCTTGTCAAGCTCCCATTTAAAACGGAGG 85469 37 100.0 37 ..................................... TTCGGATGATGCAAATTTTACAGACGATACCATCGCG 85543 37 100.0 35 ..................................... TAGATTTCTAGGGATCTATCGAAGTCTTCAGTATT 85615 37 100.0 36 ..................................... AAGAGCTCATTGATTCAAGTATAAGGCTGTGGGACT 85688 37 100.0 35 ..................................... TTTTGGTATGTCCTGGAGCTGCCAAAATAACACAG 85760 37 100.0 36 ..................................... ATACAGGTTGACTGCCCGGAGTTCAAAACGCTTGAG 85833 37 100.0 35 ..................................... AGCAAAAAGTAAAATCAGGCACTATAAGCATAAAT 85905 37 100.0 36 ..................................... TAGGATCATAAATTATTATTTTCCCCGCTGCATCTG 85978 37 100.0 35 ..................................... TAACAATTTGATTACAGGTTGTGGATGGGGAAACA 86050 37 100.0 37 ..................................... TTGGGTTGGCGGGATCATCTCAAGCGGGTACAATAAT 86124 37 100.0 36 ..................................... AAATTCCTTCTGAAGAATTGAACGGGGCTTCAGTTG 86197 37 100.0 35 ..................................... TTTCCTGGTTTCAGCCATTCGGGCAATTAGATTAA 86269 37 100.0 35 ..................................... ATTCCTTATTTTCCTCTTAATTTCTCCTCTCACTT 86341 37 100.0 34 ..................................... ACATATTTTAAAGGGAAAAAAGAAGATAAGTAAA 86412 37 100.0 37 ..................................... GAAGAGGGTATCCGGTGATTAGTACATCATGGGCTTT 86486 37 100.0 37 ..................................... GAAGTCGTCTTTTCACATCGTAAAGTATTGCTAGTTC 86560 37 100.0 36 ..................................... GTCCCAGACAGGAATAATAAACCCACTCTCGCACAA 86633 37 100.0 31 ..................................... CTCTCGAAGAACCTTTTTGTTTTCCCATCGG 86701 37 100.0 38 ..................................... TTCGTTATCTTCCGGCTAATTATGCCTCTCACGTCCAA 86776 37 100.0 35 ..................................... TTCCCCGCTCTATCTCATCTAGAGCTACCTGGACG 86848 37 100.0 35 ..................................... TACATGGTATTAATATGGAACCAAAATCCCCCACT 86920 37 100.0 35 ..................................... TCAGGAAGAGGGTTTTACTCATGCTCCTGTGATTT 86992 37 100.0 34 ..................................... GAATTCAGAAGAGGATACATTGCCATCATGGCAA 87063 37 100.0 36 ..................................... TGATGATAGAGAATACGAAATCGAGAGTTTCAAACG 87136 37 100.0 35 ..................................... TACTGATGACTTTGATGATATTGCCGACTCTACTA 87208 37 100.0 34 ..................................... TCATTAAATGCTTTTCAAGACTGGTATTATCAGG 87279 37 100.0 36 ..................................... TATATGATTAGTGTATAGTAAGAGTATTGAAAAGCG 87352 37 100.0 37 ..................................... ATACAAGCTAAAGTATCTAATTCTACCTCTACTACAC 87426 37 100.0 35 ..................................... GTTGCAGGGTGGGGAGATGGGACACAGCTTAATGA 87498 37 100.0 34 ..................................... TTCCTAGTCTTAGATCGGCATACCTGAGGGCCTT 87569 37 100.0 33 ..................................... ATCAATCGCGGAATCCCTTAAAATTCTGGCAGC 87639 37 100.0 35 ..................................... TCTGCTGGGCCGGGGTTCAAAATAATCTCATCAAG 87711 37 100.0 35 ..................................... AATATTCTGAAAGGTTGCAGGCTGAAGACAGATGT 87783 37 100.0 34 ..................................... CAACAATTGGGTTACTATTTTGTGTGTTGGTGGA 87854 37 100.0 35 ..................................... TCCTGGGGCTTCTTATGGCCTCTGTGGTCATGTTA 87926 37 100.0 35 ..................................... CTAAAATAGTAATGATAGTTTCATATGTATATATT 87998 37 100.0 36 ..................................... CATGTTTGAAGGACGCAACAGCTATGTTACGCCTGC 88071 37 100.0 37 ..................................... GTATCTACCCCTTCTCTATCCCATTTGTGTGGTGCCT 88145 37 100.0 34 ..................................... TTAACCTCAAAAACACCTAAAATCTCACAAGCTG T [88175] 88217 37 100.0 37 ..................................... CTTAGGGATATGTTTAGCTCATATATAATGTATATGA 88291 37 100.0 37 ..................................... ATTTTCAATTGTATATATTACAAAGTTATACATTGAA 88365 37 100.0 34 ..................................... TACTTTATATAGCTTTCTGCGTCTGATTCAGAGA 88436 37 100.0 31 ..................................... TGTCACAATTGTAGTGATATTAATAGCCCGT 88504 37 100.0 34 ..................................... TCATCAGAAAGCCCGCGTGAATACTTCATTTTCT 88575 37 100.0 34 ..................................... TTGCAGGTTTCACCGGTTATGTCACATGTTACAG 88646 37 100.0 35 ..................................... CGGTTCAGGACTCGGTAGAGCACTATTCCCGAAAG 88718 37 94.6 35 .....A............C.................. TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 88790 37 94.6 36 .....A............C.................. AATGTATACGTCCTATATTAACAGGTATAAAAACGG 88863 37 97.3 36 ..................C.................. ATACTTTCATCAGTCAATATTTCATTTTCGTATAGA 88936 37 100.0 35 ..................................... AATGGATTTGGAGACCGTTCTCTACTTGGACTTCT 89008 37 91.9 0 ......A...........C................G. | ========== ====== ====== ====== ===================================== ====================================== ================== 126 37 99.8 35 ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : AGAGAGTGATGTTTTTATTGCCTCAAAAAAGAACCATATAAAGGGAATTGTTGACGAAGTTTTATTTCTGGAAGATGGAACAGCAGCTCCTCTTGAATACAAATTTGCCGAATATAAAGATAAAGTATTTAAGACCTATAAATTCCAGCTTGTGTTGCAGGCACTTCTTATTAGAGAAAACTATAATATTGAAGTAAACCGTGCGTATCTTTGTTTTACTCGCAGCAACAGCCTGGTCAAAGAAATGGAAATCACCAGCTCTGATTTCAAAAAAGCCGAGAAAATAATTGAGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAGACTTCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAGTGTTGTGACCTGTGTAGATGTCCGACACTAATATTTATCGAAACTTCTATAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGGAGAGCTGAAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1610192-1612692 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019780.1 Methanosarcina mazei strain TMA chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1610192 37 97.3 37 .....T............................... AAGATCCACTAAATGATGGTGCGTGGACACTTGAAGG 1610266 37 97.3 36 .....T............................... TTTCGTTTTCTACGTTGTCCCATCCACCAAAATAAA 1610339 37 97.3 37 .....T............................... TCTTGTATCCTATTTCAGTAGCAACTGCCTTATAGCT 1610413 37 97.3 33 .....T............................... TGTTCAATGATCTCTACTTTTGCCGGGAAAGAT 1610483 37 97.3 35 .....T............................... CGGAATTCTCGCTAAATTGAAATCAGGCGAAATAG 1610555 37 97.3 35 .....T............................... TATGTTTCAAAGAGAGCTTTAACAGCGTCACTGTT 1610627 37 97.3 36 .....T............................... GTTATTTTTATATCAAGTTCGTTCATCGTGTTTTCA 1610700 37 97.3 35 .....T............................... CAGTGTGGCCGTTGAATGTGATTGTTTCATTGTCG 1610772 37 97.3 33 .....T............................... GCAGACCCAAAACGTATTGAATTCGTCTTCTGT 1610842 37 97.3 35 .....T............................... CCACCTTGTAGGTAATAATCTTTCTAATTACTACT 1610914 37 97.3 35 .....T............................... TACAGTGCTTCAATAGGTCCGGTCATTTTCTTATG 1610986 37 100.0 34 ..................................... TTCAAGCTCCGCGTTAACGGTTCCGCGTCCTACT 1611057 37 100.0 36 ..................................... AATGCAACTTATTATGGGGTATGGTGTGCTCCTGTC 1611130 37 100.0 35 ..................................... TCTGAGAGTTTCTCCGGCTTCCGGTACTCTTGTAT 1611202 37 100.0 35 ..................................... AACGGTGATAGAAACGGGCGAACTGGCATCCTCAA 1611274 37 100.0 35 ..................................... TCGGAATCGGCTTCATTGCCCGGATAAGAGTGAGT 1611346 37 100.0 34 ..................................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 1611417 37 100.0 37 ..................................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 1611491 37 100.0 35 ..................................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 1611563 37 100.0 34 ..................................... TTTATAATGTACCAGATCCATTCTGGCTGAATTA 1611634 37 100.0 37 ..................................... TTTTAGAAGAAAGGGAGCCACCCTTTCGTACAAAAGT 1611708 37 100.0 35 ..................................... CTATGTTGGCCTGCCCATCTACGACTTCGAGGCTC 1611780 37 100.0 38 ..................................... TATTCAATACCTAGATTAACTGTATGATCCCTGTGACT 1611855 37 100.0 37 ..................................... TCAAGACTGTCAAGCGCATTATTAGCCTCTTTGAATG 1611929 37 100.0 32 ..................................... AAAACCTTAAAGACTTAGTAGAAAAGTCAAAA 1611998 37 100.0 35 ..................................... AAAAGCTTGCAGACTTCTCTGCTTCAGACTTAGTT 1612070 37 100.0 35 ..................................... CCAGATCTACAGGTTCTATACTTTTGTCTCTGCTA 1612142 37 100.0 34 ..................................... ATTAAAGTAACGTCACAGGAAAAAGAAAAGAGTA 1612213 37 100.0 35 ..................................... CACAGTCAATGCCTGGTACTGGTGCAGGGTTTATA 1612285 37 97.3 35 .....C............................... TTCCAACTCAGGCACTCTTTCAGCCTGAGTAATAG 1612357 37 97.3 37 .....C............................... ATAATCTCATTCTCGCGTGTGCCTCTGAGAGCCTCTG 1612431 37 97.3 45 .....C............................... AAGTGATGACGGGGCGGTGTTTACTGCCCTAACGGGTGTCACTGC 1612513 37 97.3 34 .....C............................... ATATAGTTCAAAATCGAACCGGTTCACTAAACTC 1612584 37 97.3 35 .....C............................... TTTTTCGAGAAATTAAGTTAATTTTGCTTAATTAA 1612656 37 97.3 0 .....C............................... | ========== ====== ====== ====== ===================================== ============================================= ================== 35 37 98.7 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGTAAATTCATCGCATAAATCAAAAGCCAGATCAATCAGGTGCCTATAAACATCGTTTTTGGGTTCAGAAGTAATATCTATCAAGTTTCTCCTGTACATCAAGTTCTCTCCGTAAAAATTGATTTGTAAGACCATACCATGCAGATACGATTAAATCATTAATTATTCAAAGGAATCTTTGAATTATGCAGACATACTCTGGCAAAAGACAAATCTGTATAAAATTATTTAGTTATTAAGTACATAGTTCTTTCTCTAATTTATTCATTTTTGTTGATTCTTTGCTATATCAGGAAATGAAAAGGAATATGCACAAAAATACCAATCAAAAACGAAAGTTTAATAAAAAGAAAAGCATATGTCCAAATGTTTATGAATTAATGAAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCAGAAAAAGGGCTTATTTCAGGCATTTTCTAGCCAAATAAAGGAAATTTTTGCCCT # Right flank : CAAAATCCAATAAGATGGTGAAAAATATGAATAAGTTACTTCAATTTTTTACTTTTTTACCCTCACTGAAACAGAAAACAGTCATAGTATCTTACATTTCAATATTCTTGCTGTTGATTATATTGATCTTAATGGTTGTAACTAAGGTAATATCCTACAATGATGTCAAATATTTCTTTTGGATAACATCAATCTTAATACCATTGTTATTTACACTGTTTATAACGAGAAAGCCTACTGCAACGTCAATACAAGAAAATAAAAAATTGATCCTTTTACTTATTCTGAGTTTTGTTTGTTTAATTGTAACAATATTTTCGGCAATGCTATTAATGAAGGGGCAAACACCATACAATTTCTTAGATAGATAACAAATTTGATTATAGGTACTAATATCTCAGCAATTTTAGAATGTATCTCAACATTGAGATAACTTCTGATGAGCATAAAGAAAATCAAAGCTCCTTAAAAGATTCATATAAGTTTTTAAGATATTGGTT # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 3 1613237-1613996 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019780.1 Methanosarcina mazei strain TMA chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1613237 37 83.8 36 .G...A...T.GCT....................... AAAGTTAACCACCCACGCTCATCTACGTTTTCAAGC A [1613244] 1613311 37 100.0 35 ..................................... CATGCCAATAAATTCCAAATCTCATACTGAGAATT 1613383 37 100.0 34 ..................................... TCATTAAGCGATTATTTCTTTTTGAAAATACTTA 1613454 37 100.0 35 ..................................... TTTGTTGTAATAAGTGTGGAGCGCTTAAGGAAACA 1613526 37 100.0 35 ..................................... TTAGAAAATCGTTGTTGTTGTGACCATTCGTAGCA 1613598 37 97.3 36 .....C............................... CGTCTAACAGGCTAGAACCCCATACACCTATTGTGA 1613671 37 97.3 35 .....C............................... ATCAAAGCATAGCTGTCCTCACCGTTTGCCTCAAA 1613743 37 97.3 34 .....C............................... CAAATGGTTTCGATCAACAACATACAACTTAAGA 1613814 37 97.3 36 .....C............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 1613887 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [1613892] 1613959 37 81.1 0 .G...A...T.GCT......................G | A [1613966] ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 94.1 35 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TTTTTACTTTTTTACCCTCACTGAAACAGAAAACAGTCATAGTATCTTACATTTCAATATTCTTGCTGTTGATTATATTGATCTTAATGGTTGTAACTAAGGTAATATCCTACAATGATGTCAAATATTTCTTTTGGATAACATCAATCTTAATACCATTGTTATTTACACTGTTTATAACGAGAAAGCCTACTGCAACGTCAATACAAGAAAATAAAAAATTGATCCTTTTACTTATTCTGAGTTTTGTTTGTTTAATTGTAACAATATTTTCGGCAATGCTATTAATGAAGGGGCAAACACCATACAATTTCTTAGATAGATAACAAATTTGATTATAGGTACTAATATCTCAGCAATTTTAGAATGTATCTCAACATTGAGATAACTTCTGATGAGCATAAAGAAAATCAAAGCTCCTTAAAAGATTCATATAAGTTTTTAAGATATTGGTTTCACGGATCAATAATCCAAGCTGTATATAAGTAGCTAATCTCTCA # Right flank : GTTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAGAACCAGACTCTAGCCAAAATACAACTGAAACTGTACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGATCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACTGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAGAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 1626805-1628919 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019780.1 Methanosarcina mazei strain TMA chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================== ================== 1626805 37 100.0 34 ..................................... TTTTCTCAGCTTTGAAAAGTGCTTCAAGTTCTTC 1626876 37 100.0 37 ..................................... TTTTTTTCAGTGAGTCTAAGCTGGAACCAGTTAAAAC 1626950 37 100.0 36 ..................................... TTATACTCGTCAATCCGGTTTTTAATCTCGTCTGGA 1627023 37 100.0 34 ..................................... AAAACCAAGATCAATAAACCAATATATAAAAAGG 1627094 37 100.0 35 ..................................... AGCTCCAGCGAAGGCAATTTCAAATAAATATAATC 1627166 37 100.0 37 ..................................... TACAGGTGCGAGAGGCTTGTGAGGTTCTTGTATTATA 1627240 37 100.0 35 ..................................... TCCAGTGGTCAGGTGTTTCGCCGTGTATTTTCTCA 1627312 37 100.0 36 ..................................... TAAGAATAACACCTACAGGTAAAATAGTACTTGAAG 1627385 37 100.0 36 ..................................... CTGCTGATCTGTCCGGCAATCCGGTAAACATCTTTT 1627458 37 100.0 35 ..................................... GTTGCCCTCTTGACTCAGAAGGAAGCAAAAGAACA 1627530 37 100.0 37 ..................................... TATTAAAAAATAGTATAAATAGTAAGTCGGTTGAAGT 1627604 37 100.0 36 ..................................... TTAAAAAATTTCTTCTCCTTTGCAGCGTACCATTTC 1627677 37 100.0 37 ..................................... ACCTGTTTCATTTATAAGCCTCTCTGTCTTTTAATTT 1627751 37 100.0 29 ..................................... TGAAGGAAAACATCCGTGAGCCTGTGGTA 1627817 37 97.3 31 .....C............................... CTATTCGTGGCCCACCCCTCCATTTGAAGCT 1627885 37 97.3 30 .....C............................... CAAAACTTGATGACTTATTTACGCCCAGCA 1627952 24 62.2 9 .....C..................------------- GCGAGCAAG Deletion [1627976] 1627965 37 91.9 18 ..C.A.A.............................. GATGAATCTATCACTTCC TAA [1627971] Deletion [1628020] 1628033 37 97.3 27 .....C............................... AAAGAAAATGACACAGCTATAATTAAC Deletion [1628097] 1628097 37 97.3 38 .....C............................... GTTATCTCCTTTTAATTAGCGTTGTTATCATTCGTTTT 1628172 37 97.3 29 .....C............................... TTTTATATATTAATGGAATAAAATCATGA 1628238 37 97.3 27 .....C............................... TCTTATTTATCTGCGTGATAATTTACG Deletion [1628302] 1628302 37 97.3 29 .....C............................... TCTGCATTTCTGAGTATTTTAAAAGTAGA 1628368 37 97.3 32 .....C............................... TCATTAGCATGTCCTCTAAACTCGCTTTTTCT 1628437 37 97.3 30 .....C............................... CAGGTAACGTTTTTATGTCAAAAAATAAAT 1628504 37 97.3 28 .....C............................... CGGTTCTTTGTGACTGGGCGAATCCAAG 1628569 37 94.6 58 .....C............C.................. AATCTGCTATATTATCCAGTATTACTGAAACTTACAACGTCTAATTTCATGTGTTCGT 1628664 37 94.6 35 .....C............C.................. TTCTATGAACGAGATTCCTGTTACTCTTTTTGAGA 1628736 37 97.3 35 ..................C.................. TTTCGAAGAGCGTTTCTTACTTCTTCTGCTTCTTC 1628808 37 75.7 37 TG...A...GT..T....C.......G.........T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTC C [1628819] 1628883 37 83.8 0 .....AT.A..................A.....T..T | ========== ====== ====== ====== ===================================== ========================================================== ================== 31 37 95.9 33 ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Left flank : GGAGAGGAATTGCAGGGATGAGGGATAAACTGATCCACAACTATTTCGGTGTGGATTCCGGTGCCGTATGGGATACCGTAAAAGAGGATATTCCTGCTCTCAAAGAAGAAATCACTAAAATTATTCAGGACCTTAATGAGAACGTTTAGTTTTTTTAATTTTGTCAACCGATCTATTATTATGAGTACAAGAAAAACATTCGTGAAGTTCCAGAATATTGCCCCTCTTTCTGATCCTGCCTAGGGACGGAAAATCCCTCCTCGCTCCCAATATAAAACCATATTTCACGGTAGATCTGAAAAAGAGTATGTACAAATATACAAATCAAAAACAAAAGTTTAATAAAAAGAAAATCATATGTCCATATGTTTCTAAATTACTAAAAACCCTGTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTCCCAGCAAGAATTTTAGCCTCGAAAAAGGGCACATTTCCGGCCTTTTCTGGTCAAATAACGGAAATTTTTGCCCT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAGAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCATTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //