Array 1 61408-58626 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPNB01000005.1 Porphyromonas levii strain AF0918 NODE_5_length_62567_cov_40.857655, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 61407 30 100.0 36 .............................. ACGCTTCGCCCTCTCTTCGTAATCCTCTACTTTCTT 61341 30 100.0 36 .............................. ATAGCTGCGTATCGTGCGTATATCCCACGTGTGCAA 61275 30 100.0 37 .............................. TGCGAGGTGGCGGGGTGGTTAGAGGTGGCGGTACACT 61208 30 100.0 37 .............................. AGCATACGGGCTGTTCTACTCTCACGAAATAGACGAT 61141 30 100.0 36 .............................. TGGGGATACCAGCTCCTATTGTCATGAGCTGGAGCG 61075 30 100.0 36 .............................. CAGACACCCTTTTTGACGTCAACAGCCGTAAAAAAC 61009 30 100.0 35 .............................. ACAGATACAAGTAGAGCATATGCAGACACACCAGT 60944 30 100.0 36 .............................. ATAAAGGCGAGAGGAGGGCAAACAACCCTCCTCTCT 60878 30 100.0 34 .............................. CCTTTGGAGGTCTAAAACAAGTCAAAGAAGACGA 60814 30 100.0 36 .............................. TGCCAAAGAGTTGGCGGGAGAAAAGCCAAAGAAAGC 60748 30 100.0 37 .............................. ATGGCACCTGATTGGCTCGGTCTCTTTCTTTATTTCC 60681 30 100.0 35 .............................. TATTCACCTAAGATAGAGCTGAGCAACGCTCCAGT 60616 30 100.0 35 .............................. TAGTCTCATCTGTTAGTATGTATTTCTTTTCCATC 60551 30 100.0 34 .............................. TTCTGTATGCAGTAAGTTGATTCATCTGCTAAGC 60487 30 100.0 34 .............................. TGGGGATACCAGCTCCTATTGTCATGAGCTGGAG 60423 30 100.0 36 .............................. AGGACTATCACCAGCTTTGGAAGTGGGCAACTGGCA 60357 30 100.0 36 .............................. CGCCTGACGGCTCCGAAGGCGGTAGAAAAGGCATGC 60291 30 100.0 35 .............................. ATCTGCAGTACCTCCTTGATAGCTTGCAAAAAGGC 60226 30 100.0 35 .............................. AAGCCTTCGGAGCTGCGCAAGCTGCGAGGGCTTTT 60161 30 100.0 34 .............................. CACTATGCCCCCCCTACTTGTTAGCCTTTTTAGC 60097 30 100.0 35 .............................. TACCGAAACTTACATATAGCTTCAAGGAAGACCAA 60032 30 100.0 35 .............................. GCGGTAACATTCACGCAAGCGGTGCAGGGTAGTAA 59967 30 100.0 36 .............................. AGTTGTTTTGCCATGTTCTCCGCACTTCCGCCCATA 59901 30 100.0 36 .............................. CGTTGCACCCTGGCATTGGTAGATACACTAGCCCAT 59835 30 100.0 38 .............................. CTTGTCCTTATTTCTAAAGGTTTCTTCAATCTCTGATG 59767 30 100.0 34 .............................. AATACACGTATATGTGTCCAGGCTGGACACGCCT 59703 30 100.0 36 .............................. ATGTGCTGCAGGCAGTACAAAAGCTAGAGCGTGAGC 59637 30 100.0 36 .............................. GGGATATGATTTAGAAGCCCCCTAACCCCCTAAAGG 59571 30 100.0 36 .............................. CAACTCACGCTCTCTAATGCCCCTGCATCGCTCAGC 59505 30 100.0 36 .............................. AGACTTACTAACAAATGAGTCGTCAGGGAAAAGACC 59439 30 100.0 36 .............................. CTTGACTGTCAAGCCGTATCACGTGTGCGCACTCAT 59373 30 100.0 35 .............................. AAGCGCTCTCTAAACTTCTCTGCGTACAGTTCAGG 59308 30 100.0 34 .............................. GATGCAATCCGTATCTTAGCACTCATGACATATA 59244 30 100.0 35 .............................. TTCGAATGGCGCTCGAAAGGGCAGGCGAGCGACCT 59179 30 100.0 36 .............................. TTTGTGGGCGTGCTGGTGGCAGGAGCTAAGGAGGGT 59113 30 100.0 36 .............................. CTTTTTGCTACTGCATGCCATCACCGCTATTGCTAT 59047 30 100.0 35 .............................. TAGATACTTCTAAGTTAAAATTGAACTCAACCGGC 58982 30 100.0 34 .............................. ATCTACAAACTGGAAAGAGCTGGAAGCGAAAGGT 58918 30 100.0 35 .............................. ATGTTGAATATCTCTGATGATGCAGATTTAGATGA 58853 30 100.0 36 .............................. GTCTTTCATCTTGTTCTTGCCAATCATCCACCCTTT 58787 30 100.0 37 .............................. TTAGCCTTCTTTTCGGCTATGCGTGATAAAATAGATT 58720 30 100.0 35 .............................. ATAATCTTCACGCCCTTTTCCTTCACATATTTCCT 58655 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 43 30 100.0 36 CTGTTAATCGTACCATACTGGAATTGAAAC # Left flank : CCATCCCCAATAAAAAGGGGCAACCTCCCAATGCTTGAAAACACCTTCCTCATATTCTCAATAACTGCTATTGCGTTTCTTTTTAACACTACAATATACCAATAATCATCAACATAGCAAAGAAAATAGCACCTCAATTCATTGAATAATACATGGTTAAGGCATATTCAGCAAGCTCTAAGTATGGATGGGAAAGGACGTTGCAAAGACAATATTTGGATAGAGCGCTTTTGGAGAAGTATCAAGCAAGAGTATATCTATCTTAATCCAGCCGATACAGTCTCAGAACTACGGCAGGGTATAGGGAAGTGGATAAAGTTCTATAACTATGAGCGCCCCCACCAGAGTATCACCAAGCTACTCCCTGCCATGGAATATGGAATAGTAGTAGCTGCATAACAATAACCAATAACTATGTAAAGAGAAAGAAAATGTGTACGTTTGCGACAGTGAAAGAAAAAAACACTAGCCCGTTGTCTAAAAATGGGGAGTACTATAAT # Right flank : TATTCGTCATCATCACGCACCTTATGTTCGATAGTTCTGAGAGATGGGGGGATTTGAGAGAGGGGGAGTGGTCGAATTCTCTAGCGCGAGCGGGGAAATTTATCTCTAGGAATAAAAATATTTATTCCTAGAGATAAATGTTTTTATTTGTGCAGAAAAGTAAATTTATTCCTAGGGATAAATTTGATGGTGAAGTAGACTATTTTTTTGCTGCTGTATATCAAGCGCTTGGGTGAAGGGTATTGCGCTGTAAATTGGTATATTTGTACGCTAATGTATAGGTGTGTATGAAGCTAAGGACTGAGGATTTAGTAAAGAAATATAAGAGTCGTACGGTGGTGAACCATGTCTCTATCGAGGTGGAGCAAGGTGAGATCGTGGGGCTTCTGGGGCCTAATGGCGCTGGGAAGACGACTACTTTCTATATGACGGTGGGGTTGGTACAACCCAATAATGGTCGGATTTTCTTGGATGATCGAGAGATTACCAAGGAGCCAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 3818-969 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPNB01000064.1 Porphyromonas levii strain AF0918 NODE_65_length_12278_cov_28.979590, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3817 30 100.0 35 .............................. ATGTAAGTATCGAAGATGAGCAAAAGGATATAGAG 3752 30 100.0 35 .............................. GGCGAGAAAAAACCTTGAAAAGATAAAGCAGGAAA 3687 30 100.0 35 .............................. ATCTAAGCAAGCCTACTAAGTACGAGGAGGGCGAT 3622 30 100.0 36 .............................. TCCGCATGAGCCTCGCAAAGCTCTACAAAGTTTTCC 3556 30 100.0 35 .............................. GCAGTATAGGTGCGTGGGCGACAGCAAGCTCCACC 3491 30 100.0 36 .............................. TCGTCTCAATCACAGAGGGCTTGATACGCGCCGAAA 3425 30 100.0 35 .............................. TTGATATCCCTCTTAACTCCTACGTGGAGTATGAG 3360 30 100.0 37 .............................. TTGCAATCAAGGTATTCGACTAGCCTCTCCTTTGATG 3293 30 100.0 35 .............................. AAGAAGTACAAGTGGAGCTTGATTAAGGGAGCGGA 3228 30 100.0 37 .............................. GTACTACACTAGAAGAGTGGGAGAAAGAGAAGTTCCA 3161 30 100.0 35 .............................. TTCATATTTTTCTGGTGTTACACTCTTTCCGTTGT 3096 30 100.0 37 .............................. GCGCTTTCTTCTGGATCGCATCCCAGTTGTCTACCAG 3029 30 100.0 36 .............................. TATTTTGACGTATTGCAGTACCTCACAAGCAATAGG 2963 30 100.0 34 .............................. TAAGCACTGCACTTACTGTTGCAGCGCCTACACC 2899 30 100.0 34 .............................. CTTGCGACCAGTTAGGCTACAAGCCTATTACCCT 2835 30 100.0 35 .............................. AATGAGTGTTTGCGCCCTGTTTAGCTCTGTATCCT 2770 30 100.0 34 .............................. ATGGTATTGTTACAGCCGAGGAGCAGGCACGCAT 2706 30 100.0 37 .............................. TGATACCTCCCATCTGCACTATCATCAAGTGCAGATA 2639 30 100.0 35 .............................. GAGCAGGATAATAATCACAGAGGTTGCGCAGCTCA 2574 30 100.0 36 .............................. AGCGAGTGACCATCACCAAGGGCATCATCCGTCACC 2508 30 100.0 35 .............................. GAGGTGATGGTGCGTTACGTGGTTACTTCGCTTGC 2443 30 100.0 35 .............................. GTCGTAGAGATGCAGAGAACAAAGGCTCTAGGATT 2378 30 100.0 35 .............................. AACGTGTACGTTGCTAAGTGTGAAGAGGAGCACGA 2313 30 100.0 35 .............................. AAGACAATAAAGGAGATAAGTAATGCAGGCTTCTT 2248 30 100.0 36 .............................. GAGAATATCTGTATCTGAAACGAGTATGGGAAGATA 2182 30 100.0 37 .............................. AAAGAGCGAAGACAATAATCTGGTGGGACTGGTCTAT 2115 30 100.0 35 .............................. TACTTCATAAAAGACAACTTTGACGTAAGCGAAGA 2050 30 100.0 36 .............................. AACTGGTATCGTAAGAATTACCGCAAGACCACCGTC 1984 30 100.0 34 .............................. ATGATGGAGACTTCAAAGGTATAGATGCTGTTAT 1920 30 100.0 36 .............................. TGGATACTCAGGTACTTGCGATAGGCAAGGGTACAA 1854 30 100.0 36 .............................. GCACAAGACAAGGCTCCAGAGAATGAGTGGACGACC 1788 30 100.0 36 .............................. GCTAGAGAAAGAGAGACAACAAGAGCAACAGCAATC 1722 30 100.0 35 .............................. ATACTTACAAGGTAGAAGCCAAAAATTCTTCGTGG 1657 30 100.0 36 .............................. CTCTGCGCTTTCTTGGAGTTTATCCGCCCTTCTCTG 1591 30 100.0 35 .............................. CCGCGTATCTCCACCGTATCAAGATTCGAGGGCAA 1526 30 100.0 36 .............................. TTTCTATTCGTCAATAACGACGGGACAATGACTTGG 1460 30 100.0 36 .............................. GTGTGTCTCTCATCTCATCTTTATGCCTTTAATATT 1394 30 100.0 36 .............................. GTTTTAAAGCCAGATAGAAGTGTTAGTCTAAAAGTA 1328 30 100.0 36 .............................. TTGTATAATCTGGAAAGATTAATCTATAGAAATGTA 1262 30 100.0 37 .............................. TTCTTAGAGGTAGACAAAGAAGCCTACTTTCAAACAC 1195 30 96.7 36 .............................T ATAAGGGGCTATTCAGCGAAGAGGGTAGTATAATAA 1129 30 100.0 35 .............................. AGGTGTAAAGAGTGGTAAGTATCCTAGAGAGCACG 1064 30 100.0 36 .............................. GCTGCATGAGATTCACAAAGCTCTACAAAGTCTGCC 998 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 44 30 99.9 36 CTGTTAATCGTACCATACTGGAATTGAAAC # Left flank : ATAATATTTTCATCAAGACAAGAGGGGTGGTTAGACAAAGAGATTATGGGAATTGAGAAAGCATCTACCGATAATTTCTTGTGAGTATTTTCCTATTTCGAATTACACGCCAATGCGTAAGGATGATAGAGATCATAGACATTTCGAAAACTAATAATATCTTTGTTTGGGTCGCATCAGACTAATAGATGTAAATCATGGTTAGCATTTTAGTGCTCTGTAGGACAGTTCCCATATCGTACAATATGTGGTGCGCATAAATTGATCTATAATGATGGGTTATTCTCTAAATGTCTGTCGATACTGGTGTTCACTAGTATTTTAGACGGTCTATGAAAATAGGAGGAATATTATGTTATTGATAATCAGAAGAATGGGCTGTTGTCGTAGGTGCACTCTTATTATACGATTAGGGTTCGACGACATCTTCCAAGCAAAAAGTGCCAAATAAATTTTCTAACAGACTTGTAACCAATGATATATTATAGTAAATTTGACGA # Right flank : AGAAAGCGCAGAGCGGCATCAAGACAAAGCGGACATCTATAATACTCCCCAAAAACTAGACAACTCCAAAAGTGGTAGATTTGAGAGTTGAGATGGAATTAATTGTCATTTTCCGATGAAAAGAAGAAAAAGAGAAGTTTATGGGACGAAGAAGTAAATACAGTTCAATCTTTAAGGCACAAGTTGCTTTAGCCGGCTTGAGGGGCGATGAGACGATTCAGAGTTTAGCGAAGCGATACGAAGTGAGCCCGAGCAAGATTACAGAATGGATGCGAGAACTTGAGGAGAAAGCAGCACAGGCTTTTGAAAAGCCTTCTGATAGCACCAAAGAACTTAAGAAGATAGAGAGTGAGAATAAACGACTATTACAGAAGGTAGGACAGCTTACAATAGACTGCGATTTTTTTGCGACTGCCTGCGAGGATGCCGGACTCAAAGTGAGATAATCGAGATGGAGCGTCAGCGCCCCGCAGGCTTAAGTCGAAATCGTTTTTGTAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //