Array 1 121172-119399 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXO010000003.1 Cf. Phormidesmis sp. LEGE 11477 NODE_3_length_129599_cov_4.69066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 121171 37 100.0 35 ..................................... TCGAAAAGCGAGCGCCGCCGATTGCTATGTTTATC 121099 37 100.0 35 ..................................... ACCCGCTGATGAACTCACGGGCTATATCCAGATGC 121027 37 100.0 32 ..................................... GATTAGTAAGATGTTTTGGGTAGTGCAATCAA 120958 37 100.0 34 ..................................... ACCTTTGAAGGTCGCCAGCTCGACACGCCTTTGA 120887 37 100.0 35 ..................................... TTAGAAAAGTTAGAGCAGATGGAGCAAAAGTAAAG 120815 37 100.0 36 ..................................... CCCTTAGGCACTGTAGATCCTCCTCAGCTTTGCAAC 120742 37 100.0 36 ..................................... TGGCAGCAAAAATTCAGACCACTAAACAAAGAGGAG 120669 37 100.0 37 ..................................... AAAAAGAGGTTGATATCATCGACGCACTCGCTCTTAG 120595 37 100.0 38 ..................................... AATGATTGTCACGGGGCGAATGATTGAAGCAGAAGGAG 120520 37 100.0 34 ..................................... GGCTCACTGCCGCCGATCGATCCAGCGATTACTA 120449 37 100.0 41 ..................................... TTATCATTTTTCTCCCAAATATTCGCAAAGTGAACCGTAGC 120371 37 100.0 35 ..................................... ACTCCCTGGATTACTCTGGCGATCGCACCTTTGTA 120299 37 100.0 35 ..................................... GTATTCCTGCACCTCGCCGACTTTTAGCGATCCGT 120227 37 97.3 35 .................A................... GTATAGCCCAGCAGCGCGATCGCATCCTTAGGCTC 120155 37 97.3 35 .................A................... TAGAGATGCGGGCCTCACTTGGCTTAACTGCTGCG 120083 37 97.3 35 .................A................... CTCTTCTGGTCGAACAACAATCACCTGATACGGCT 120011 37 97.3 34 .................A................... ATTAATTGAATCGGGGAGGGCTTTGACAGGTTCT 119940 37 97.3 34 .................A................... GTGTGATCAACGCATCCCGCACTACAGAACCTAG 119869 37 97.3 35 .................A................... TCTTCGATTCCTCAGAGCCACACTTCACCAACAAT 119797 37 97.3 37 .................A................... GCGCCTGCCTTGAGCGTATTCGGCATGGCCTTTGGTG 119723 37 97.3 36 .................A................... GAGGCATCTAGCTATACTCCGATAATGTCTATCATG 119650 37 97.3 35 .................A................... CGATCAGCTAGCTGCTGTACCCATCCGTCTTGGAA 119578 37 97.3 35 .................A................... ATTTCTCGCAGATAGTCTGGCCATTTGATCAGCTC 119506 37 97.3 35 .................A................... GCCGAATATTGCCCTTGTATTACGTTCATCTCTTT 119434 36 94.6 0 .................A..............-.... | ========== ====== ====== ====== ===================================== ========================================= ================== 25 37 98.6 35 GTCGAAACGACTCTAAAGCCCTCTTAGGGATTGAAAC # Left flank : AACCCAACGCAACTTAGCCACCCCGAAGTCGATGTAGTGCAAATCGGGGTAGCTAAGGTACAGTTGACCCAGCACTCCGGGATTGCCATGTAATCCTTGAGGGTTAGCAGTCAGTAGGTGCTCGAACACCTGCTGGCTGTGCTAAGTAGAATTGAGTTCTGAAAGCACTGTGATAGGCATCACAGCTATAGTTATTGAAGATAAGCTGATTCTTGGCTGGCGTCAAGCGCAGGCGAAGAAAAGTGATGAACTGCGCGAGCGGTAGGGTGTAGAACTGTGCTTTGGCTAGAATCGGCCTCGAACGTATACCTGGCAGGGGTTACAGAGAACGAGTTGAAAAAAGAGGTTCGCGCGATCGCTGAAACGCTTACCATAGTTGGATTTGACAGTTTCTTATTTCAACCATGTTTACAATCGTCGTCCATGTATTACTATATTTTTATTGCTTCGCGCAAACGTACCTTGAAAACTAGCAACCGTAAGTCTTCCAGCGGCCAGCC # Right flank : TAACTATTCTAAAAGTGCCGTCTCAAACTTCGGGCGGTAGCTCTTTAAACCACAGTCGATCGCAGCTTCCATCCCCCAAAGAAGACGAATCCGTATCAATATAAAGGGAGTTAACCTCTTCAGCGGAGAAGAGCACTATGACAATCGCACAGACAAAGAAAGCGAAATCTCAAGCAAAAGTGCCGAAAGCCAAATCTCAAAAGCTTGCCAACGCGCAAGGCAAACCGCTCAATCTTTCAGCGCGATCGCTATGGCCAAAAACCTCCGAGCTAGTCAGCCTAGAATTCTCTTTGCAACCGCATAGCGACTGTGAACTCTACGCCCAATACACCATTGGTCTACACGCCTGGTTTCTCCAACAGATTCAATCATTCGATCCTGACCTATCTGCCTACCTGCACAATGGACAATCCGAAAAGGCGTTTAGCATCTCCGGGCTCAACGGTCAGTTTGTCGGCCACCGACAGACGCTGAAGTTACAGGCTAGCCAAACCTACACC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAACGACTCTAAAGCCCTCTTAGGGATTGAAAC # Alternate repeat : GTCGAAACGACTCTAAAACCCTCTTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 7075-6536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXO010000188.1 Cf. Phormidesmis sp. LEGE 11477 NODE_431_length_7116_cov_4.65102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 7074 37 94.6 32 ..C..............C................... GTGTTCGATAGAGAACGACCACCACGCGGCAG 7005 37 100.0 35 ..................................... GTATTGTTCATTTTCCGAAGATCTAAATTACTGTT 6933 37 100.0 36 ..................................... AGCAAGTACCGTTTAGAGTTCTCCAGTCGTGCTAAG 6860 37 100.0 36 ..................................... AATCTACAGCGTCCCCTACGAGGGCGACCGTGAGTC 6787 37 94.6 35 ..C..........T....................... ATTAAGGTAATGTTTGTAAGCTTGGGGCGGATGCC 6715 37 91.9 34 ..C....T.....T....................... GCTACATAAACCCGATTCGCGCCAGTTGCGGCAA 6644 37 91.9 35 ..C..........T....T.................. TTCAAGCTCACGCTTAAGCGTTTGACCGATGTTCT 6572 37 89.2 0 ..C..........A...C..................G | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 95.3 35 GTTGAAACGACTCCAAAACCCTCTTAGGGATTGAAAC # Left flank : CTAATCAGAAACTTCCCATCTGGGTACTCGCAGCGCTTAGT # Right flank : TAAATCTTTCATAGGCGGCATAGCCTTTGGATGAGATCGATTAGGTCTTGTTCTGGTTGTGCAAGTCGTTTGTAGAAAACAGCCTTCCTAAAAGAAAGCCTATGGCGTACCAGCTAACCGTTAGCTATCCAGAAACATTTCCAGATGTCGCAGGTATTACTCCAGAACAATTCGAGCAAGAGGCGAAGTGGGCAATGGCTGTCAAGCTATTTGAGATGAAACGGCTGTCTTCAGGGATGGCAGCAACTCTAGTTGGCGTAGATCGAGCTACTTTTCTGCTGAAGCTTGCTGATTATGGAGTACCTATGATCGATTTGACAGAAGCCGAGCTTTTGTCTGATATTGCCAATGCCTAATTCCCAAATAATTGTAGTTGATACCTCACCGCTGATCTCACTGATAGCGGCTTGGGGAAATCTAGACCGCCTACAAGTTCTGTATAAAGAAGTGGTGGTTCCCTTTGAAGTGAAGCAGGAAGTTTTACGAGGGGGTTTAAGTAA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACGACTCCAAAACCCTCTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 1532-3217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXO010000197.1 Cf. Phormidesmis sp. LEGE 11477 NODE_604_length_5575_cov_3.81516, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 1532 35 100.0 38 ................................... ATTAAGCTTGAACGTCATTATCAGCTTGCCATTGAGTT 1605 35 100.0 37 ................................... TCTCTTGATGGTAAAGCCCTTCTGCAAATCCAGGTAC 1677 35 100.0 34 ................................... AAATGAAAATTACTTTTCGTCTTTTTCAACTTTG 1746 35 100.0 38 ................................... CATCATCGACTTTGAACGTTTCCCCTTCTTCCGACCAT 1819 35 100.0 37 ................................... TAAAGATTTACTCTGCAAACCTTTCAATAATTGCTTC 1891 35 100.0 33 ................................... CACGTCAAACTTACTGAAAGCATTTCAGAGATG 1959 35 100.0 38 ................................... ACTGTCGCTTTCCTGAATCAAAGTATTTAGAAAGAATG 2032 35 100.0 39 ................................... GTCTTGTAAGTGATACGGTCGGCGGCAGGTTCGGAAGGG 2106 35 100.0 37 ................................... ACTTAACAATCATTGTAAATCGCGGCGTATAGCGCAC 2178 35 100.0 37 ................................... ATTGCGATTTAGCCAATCTCTGAGCTTGGGATAAGTG 2250 35 100.0 38 ................................... CCGTTAGCTTGTGCTACTTTCAAAGCAATGTCAGTAGC 2323 35 100.0 33 ................................... TTTTTTGACTGAAACCTTGCCCGCGCATATTTG 2391 35 100.0 35 ................................... CAGATAATTATTACAGTACTTACAATACTTTACGT 2461 35 100.0 35 ................................... ATGCGATTTTGAATGTCGCTGTCAAGAGAAGTCCA 2531 35 100.0 40 ................................... AAACATCCTGTGGAGCACGACGACGGCATTCAGATTCGAA 2606 35 100.0 40 ................................... CCGACAGCCAACACGGCAGTTTCATCCGTGTAGTCAAAGT 2681 35 100.0 34 ................................... GTTTTGAGTGGCTTTGTGACCTGCCGCATCAATA 2750 35 100.0 36 ................................... AAAATTAAGAATTTTCAATAATTCGCATTGCTAGTG 2821 35 100.0 38 ................................... CCGACAGTGTCAGGGAGACACATGCGGTTGAGCCAGCT 2894 35 100.0 36 ................................... GAATGAGGGCACCCTTCTGCCTCTCTCCTCGATCGG 2965 35 100.0 34 ................................... GACACCGTCAAAGTGTCTTCTGGTTGGTTTAGAG 3034 35 100.0 40 ................................... CAAATTGGGGCCTCAGGTACTGGTTACAGTACCTACAACG 3109 35 97.1 35 ..........T........................ TCAAACTCCTTGCTGGTATCACGAGCTTCTTGACG 3179 35 82.9 0 ...................C...ACAT....G... | T,AAG [3198,3209] ========== ====== ====== ====== =================================== ======================================== ================== 24 35 99.2 37 GTTCAAATTCCATTACCCCGCAAGGGGACGGAAAC # Left flank : ATCACCGGATACATGAATCATTCGCTGACGCAGGCAGTGTTTGCGCTAAAAGAGTCAGGGGCGCTGCGAGGGGAAGTAGAGCTGCTGAACTTTCGCGGAAAGAGCGGCGTCGTGAGGGAGATCTTGCGGCTAGCTTCGCGAGCGGAGTAAGCGTTACCTGCAAACTCTGACTGTGACCAGGTTTGCAGAACAGCGGCTCGCATACTGAAACTATGCGAGTCGCCATATTTTGTCAAAAAATATGAAGAGTCCACAAAATCTATCGACATTCGTTGATATTGACTATATTGTTGGCTCAGACTCCTAAATTCGCTAGGGTCTATAGAACCTTGAAAACCGCATTCTTTCGTCGACCCTAGAGAATTAACTACTGTGTAAGGCTTTGAGCCCAAATTAAGGGCACTTTCTTGACAGTGATTCTCATCTGCTACGGCCTTTTTTAGACCCTAGCGAATTTGGCTTTTGAAAGCTGCTCTCCGTCAGGCTTTCAAAGACCAGGG # Right flank : CCAAAAACATATTGTCGCTCTCGTACTTCAGCCCATCGCGCTATTTCGGCTCTCTTCGCTGCGTCTCTTCAAAGTGCCGCCACCGCTGCCTAGCCACAGCCTTCTGTATCCGTAGAGATACCCGTTTTACAATCAGCGCTTGTTGTAGCGCGCCTATCTCACGCAAATGACAATACGCCTCTTGATACCCTCGGGCAGTACCCTGCCCCGAAGCACTAGCCGAAGGTCGATACTTTCCCAGCCAGTTCTTGATAGCAATCGCGTGCGCTCGGTTAATCATGCCCCTCTCTCCCACCCTGTCCGTTGGCAAAACGGGCTCAACCTCCGCTAGAACTACTCTACCCAGTTCAGGCAAATTCTCTAGATCTATCTCGGGCAAGAGCATATTGACCACCATTACGCTATCAAGAACAGATTTCTTCTTATTAAGAGTAGTGCTCTTCCCTGCTGACTCGGCATAGGCTGACGACAAAAACCATCACCTAGCCAACGGCGAAATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTCCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 53-731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXO010000090.1 Cf. Phormidesmis sp. LEGE 11477 NODE_95_length_26752_cov_4.49514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 53 37 100.0 33 ..................................... AGTCGATATCTCAACGGTGCCGGACGGCTGTAT 123 37 100.0 34 ..................................... AGACTTAGGCATGCTTTGAGTTGTCATCGGTTTT 194 37 100.0 33 ..................................... GCTTGCTCCTTACCAAAACGATTCATCAGTAAG 264 37 100.0 35 ..................................... CTATCTGACGCTTGGTAGGGATAAAATGTCTTTTC 336 37 100.0 34 ..................................... AGATATTCTCATTTTCAGGACTTGGGCGGTAGGT 407 37 100.0 37 ..................................... CTAACCACTCATGCTGTTGCACGGCACAAGGTATCAG 481 37 100.0 37 ..................................... TGAGGGCGGTGTGAGCGCCCTGGTAGATGATTCCCTG 555 37 100.0 34 ..................................... TGTCCAGTAAGGATTACCCGTTGCGTCATTAGTC 626 37 100.0 33 ..................................... TACAGCAATGATATAGAGCATCAATTCATCAAG 696 36 86.5 0 ...........T...........C......-....TA | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 98.7 35 GTCGAAACGACCTCAAAACCCTCTTAGGGATTGAAAC # Left flank : CTCTTAGGGATTGAAACATCCGTATGGTGCAACTAACCGATGCTGAAGAAAAG # Right flank : AGCACCGATTCAGGCGTGTTCCTCACTCTCATCCAATCAAACAACCTATCAAACCCCTACGCAAAGAAAACGGTATTATCTCTGACAGCCTCGCCGCCAATCCGCTCTACCTTGTGCTGACAGCACTCGCATAGGAAATAAAATCGAATACTGTCTTCCTCTGCTCGGATTAGCTTATTGAGGCGATCGCGCAGCCGCACATACTCCGTCTTCGTCAAAGCGCACTCAAACACACTAAACTGCATCCACTGGCCATAAGACTTCAATATCTTATGAATCTTGGTACGACGCTTATCTTCTGAAATATCGTAGGTGATCACAACATGCATAAAAAACCTACCGAACGTCACCAAAAATATCTAAAACAACAATCATCCATTACTTCAAAACCAGCGGCGGATACTGATCGATCTCAGCCATCAAATACTTAGCCAGCAGCCGAGCTTGAATTTCAAACGCCTCCTGATACATACACTGCCGCCCCATCACCGGATGCTTAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAACGACCTCAAAACCCTCTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 1924-2611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXO010000228.1 Cf. Phormidesmis sp. LEGE 11477 NODE_1536_length_2676_cov_4.23264, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1924 37 100.0 35 ..................................... TTATTCAGGCCATAGCCGGGTCTCAATTGTTCTTT 1996 37 100.0 36 ..................................... GCACCCGCTTTTTCTTGATTGGGCCAGATCTGTAAA 2069 37 100.0 34 ..................................... AACGAGTGGATAGAGAGCATTGATTGAGTCGATG 2140 37 100.0 35 ..................................... TTCTTGACTGTATCTAGCTGTTGACCGACTAGGTG 2212 37 100.0 34 ..................................... TACCGGGTGATCATTTTGGCCTTTTTCAGGCGTG 2283 37 100.0 35 ..................................... GAATGCTGCTAGCACCTGCGAGTGCATCGCCTGAG 2355 37 100.0 36 ..................................... CTGCTATATATCGATGATGTCATACCGAAGATGGTG 2428 37 100.0 34 ..................................... GAGTCTATCTTGGGCACTCCTGAGAATATTGCTC 2499 37 100.0 39 ..................................... TTGTTTGACGGTAGCCAACCGATCGACACCGTCAAAGAG 2575 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 100.0 35 GTCGAAACGACCTCAAAACCCTCTTAGGGATTGAAAC # Left flank : AACCCAACGCAACTCAGCTGCCCCGAAGTCGATGTAGTGCAAATCGGGGTAGCTAAGGTACAGTTGACCCAGCACTCCGGGATTGCTCACGAATCCTTGAGGGTTAGCAGTCAGTAGGTGCTGTAACACCTGCTGGCTGTGCTAAGTAGAATTGAGTTCTGAAAAGCACTGTGATAGGCATCACAGCTATAGTTACTGAAGATAAGCTGATTTTTTGCTGGCGTCAAGCGAAGGCGAAGAAAAGTGATGAACTGCGCGAGCGGTAGGGTGTAGAACTGGGCTTTGGCTAGCATCGGCCTTAAACGTCTACGCAGCAGGGGTTACAGGGTATGAGCTGGGAAAGAGGTTCGCGCGATCGCTGAAACGTCTGCTATAGAGGGGTTTGACAATTTTTTATCCCGGTTGTGTCTACGATTGCCGTTCATGTATTACTATATTTTTATTGCTTCGCGCAAACGCACCTTGAAAACCAGTGATAGTAAGCCTCTTAGCGGCCAGCC # Right flank : GGGAATTCTTTTGTGCTGATAGACCGTGTGTACAGTCGAAACGACCTCAAAACCCTCTTAGGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAACGACCTCAAAACCCTCTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 516-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXO010000129.1 Cf. Phormidesmis sp. LEGE 11477 NODE_156_length_15802_cov_4.52715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 515 37 100.0 35 ..................................... CTCGTGAGATTGACTTACCTCTGAATACGCTATAC 443 37 100.0 41 ..................................... AGATATATCGTTGACTCTGGCCGAGCTTATCTCGAAACGGA 365 37 100.0 34 ..................................... TGCCTGGGTGAGCAGTGCGATGTCTATGGCACTG 294 37 100.0 34 ..................................... GTCTCCAAGTATATTTTTTGGCATTGGTATTTTA 223 37 100.0 35 ..................................... AGCTTCCTTGAAAGTCTGGTAGTTCCAGGCTTTTG 151 37 100.0 34 ..................................... GAGAACAATTTGCTTGCTGTCGATCGTTCTTGAA 80 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 100.0 36 GTCGAAACGACTCCAAAACCCTCTTAGGGATTGAAAC # Left flank : CTCAAAACTGCCCAGCCACCCCGCAAGTAGATGTAGTGCAAGTCGGGGTGGCTAAGGTACAGTTGTCCTTAGCCGTCCGGGATTGCTGTTGAATCCTTGAGGGTTAGCAGTCAGTGGGTGCTGAGAACACCTGCTGGCTGTGCTAAGTAGAATTGAGTTCTGAAAGACACTGTGATAGGCATCACAGCTATAGTTACTGAAGATAAGCTGATTTTTGGCTGACGTCAAGCACAGCGAAGAAAAGTGATGAACCGCGCGAGCGGTAGGGTGTAGAACTGGGCTTTTGCTAGAATCGGCCTCAAACGCCTACGCAGCAGGAGTTACAGAGTACGAGTTGAAAAGGAGGTTCGCGCGATCGCTGAAGTAGCTGCTGTGTCAGGGTTTGACAGTTTTTTGTTTTGGTCTTGTTCACAATTGCTGTTCATGTATTACTATATTTTTACTGCTTCGCGCAAACGCACCTTGAAAACTAGCAACAGTAAGTCTTCCAGCGGCCAGCC # Right flank : CACCGTCTTCATTGTCCACTGAGACTTTTATCTCTGTCGAAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAACGACTCCAAAACCCTCTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 345-98 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXO010000138.1 Cf. Phormidesmis sp. LEGE 11477 NODE_172_length_14747_cov_5.87825, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 344 35 100.0 36 ................................... ACCGTCAGATGGTGTGGTTAAAAGGGACAAAATCTC 273 35 100.0 35 ................................... TAGCTGGCGCTTTGCCTCCTGCTCGATTACATTGA 203 35 100.0 36 ................................... TTTTCATGAACTGGGTAGTCGCTTGCAGATACAATC 132 35 71.4 0 ........................C.ATTATGTTT | ========== ====== ====== ====== =================================== ==================================== ================== 4 35 92.8 36 GTTCAAATTCCATTACCCCGCAAGGGGACGGAAAC # Left flank : CACGAATAGCTAAACTGCTCACAACTTATAAGGAGGACGACGTTAAAGGCGATTAGTACGGCAGAAGCTGGAGCACTGTGATCTGATTGTGATCGTTACAGGTTACAGGAATCATTCGTTGACGCACGCGGTGTTTGGGCTGAAGGCATCAGGGGCGCTGTCAGGGGAGGTCGTGCTGCTTAATTTTCGCGGTAAGAGCGGCGTTGTGCGGGAGGTATTGCGATACTTTGTGACAAACTTTGAAGATATAGCGTAGGCTATTGATAGCGGTTGCTGAGGCCGCTATGGTTATGCTTAACGCCTTCAAATTCTGAGGGGGTCTTTTGAACCTTGAAAACCGCATTCTTCCGTTGACCCCCTCAGATGCCTTGCTATATGGTAGTTTCGGGCCTTTTTCTAGCACGTCAATTGAGAGCCAGTATCAATTGCAGCTCTTGATTTTGACCCCCTCAGATTTGGCTTCTGAAGCCTTTGCTACGGTAGGCTTACAAAAGCAGGGT # Right flank : TGCTGTCAAGGGTGGTTGAGTAATTTTTCAGAAGAAAGTGAGCTGTTCAAGCTTGCTTTCTTCTCTCTTTTGGTCTGTTGTTGTCAAAAATAAGCAGG # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTCCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 24440-25133 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXO010000020.1 Cf. Phormidesmis sp. LEGE 11477 NODE_20_length_64818_cov_4.8395, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 24440 35 100.0 36 ................................... TGCAGGGTCTTTTGCAAACTTTTCCTGCTGCTTTTT 24511 35 100.0 40 ................................... GCGGGCGAATGGAAGTACGTAGCGTGTGTACGTACAGACT 24586 35 100.0 40 ................................... GTGTACACAACGCCATTCACAGGCATTGGCATAAAAGAAC 24661 35 100.0 37 ................................... GAGCAAGAATGGGTTCACCATTCTCACCAAGATCAAC 24733 35 100.0 35 ................................... AACATGCCATTTTCTCGCGTGTTCATTTCTGTAAG 24803 35 100.0 36 ................................... CCTAAACATATTTTTCAATGCTTGAGCTAGCTTAGG 24874 35 100.0 38 ................................... TGTCCATTGGCCTCTAAGTACAATAGTGTAAGAGCCTC 24947 35 100.0 38 ................................... TTGCATTACCGTTAGGCAGATAATCACAGTCCTCGCGG 25020 35 100.0 36 ................................... TTGTTACTGTTTCAGTAACAGTCCCTGTAGCGCCGC 25091 35 91.4 0 .....................A......TA..... | TGAACATA [25111] ========== ====== ====== ====== =================================== ======================================== ================== 10 35 99.1 37 GTTCAAATTCCACTACCCCGCGAGGGGACGGAAAC # Left flank : TCCGCAAAGCTGGCAGCAAAGGTCACATCTTGAACCTGGGTCACGGCATTTTGCCCGGTACGCCCGAAGAGAACGGCGCGTACTTCTTTGAGGCAGGCAAGCAAGTAAATGAGCTTTTGGCAGCGGCTGTTTAGTGGGCTACCGCAGCGGGTGCTACGGCTTCAAGGACGGGGAACTCGATAGTTTCATCTTGAGAAAGCGCAAAGAGAGGATGCCGTTAGTCGAGCTTTGTCAAAAAAGATGAAGAGATCAGGCAGCGCATTTATCTTTGCTGATATCAGCGATATTATGCGAATGCAGCCCTCCAATCTGAGGGGGTGAAGCGAACCTTGAAAACCTGATTCTTTCGTTGCCCCCCTCAGATTGCCTGCTGTACATAGCGTATAGGCGTTTTCCACAGGCCGCTATTGAGATTAACTCTTGATAGTTAGAGGGGTTGACCGACCCCCTCAGATTTTGGCTCTGGAGAGCCTGTCTATAAAGGGCTCTAGAACCATAGG # Right flank : CTGAAGAAAAATGAGAACGCAGAATGCGCGACGAGGAATCTAAATCAATACGTAGCTAGCCATCATCTCGGGCCGCTATCTTGTCTCCAGCATTCATCCCTGCCGCTCGTGGCTTGACTGAAAACAAAAATCAGCTTATCTTCAGTCTTACGGCTGCGATGCCTATCACAGTCATTTCTACAGAACTCAATTTTGCCGAGCGCCATCGGCAGGTGCGATCAACACCGCACCGATGGCTAAACCCCCACACTGATTAGGCAGTCTGGAGGCATAGGGTAAACTTTACCCTTTAGCCGCCCCGATTTGCACCATGCGCGGGGTGGCTTTGCTCTTTTGGGTTCTGGTTTCCTCTCAAATCTACACAAAAAACCCGGAGACCAGACCTCATGTTTATCCCTGCTTCAGACGCTAGCGCGTCTACAGTGCCTGCTACACCAGCATCCACAGCGCCATCTACAGCCCCATCTACAGAGCCACCCACGCCATCCACAGTCCCCACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTCCACTACCCCGCGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //