Array 1 20961-20596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWW010000008.1 Dickeya oryzae strain FVG08 Dickeya_oryzae_FVG08_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 20960 32 100.0 34 ................................ CTTGCCGGTACCAAGCCCGTGACGCGGCGCAATT 20894 32 100.0 34 ................................ GAATGATGGGAATAGCTGGGCTATTATACACAGT 20828 32 100.0 34 ................................ ATCAAAGACATTGTCGTCGGCGATATGCGTAATG 20762 32 100.0 34 ................................ ATACCAAGTTTTTTCATGCCACCAGGCATGAGGT 20696 32 96.9 33 ................A............... GACATCAAGATGGGCCGTCTGGCCTGCAGCGTC 20631 32 90.6 0 ......................C......T.T | C,ACA [20603,20607] ========== ====== ====== ====== ================================ ================================== ================== 6 32 97.9 34 GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Left flank : TTCGTTATCCATCGCGTCGCGCCTCACGCAGGCGCGTGGATTGAAACATCCATTCCCATTTCTGTATTTTTTTTATATGAAGTCGCGCCTCACGCAGGCGCGTGGATTGAAACAGGATCGTGGGAGAAATTACTCTAATGCCAACCAGTCGCGCCTCACGCAGGCGCGTGGATTGAAACTATCGTTATTAGCGCCCTGCCGTCTGGGAGTCCATGTCGCGCCTCACGCAGGCGCGTGGATTGAAACTTATCAGGAGCAACAAGCGTTTGGACTGTAACGAGTCGCGCCTCACGCAGGCGCGTGGATTGAAACCGTACAGCGATGGCGAGCGAATTCGATTTGCTATTGTCGCGCCTCACGCAGGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCGCGTGGATTGAAACATCGCCAGTGTGAAGCCGCACTCAAAGGTAAAGCG # Right flank : TTGATTCGCCGGTTAACGCGGCGAAGGCGATTCCGCCTCGAACAACGGCAACGGTTTGCCGATGATATAACGCTGGCGCAAATGGGCGGAGAGTACATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACCACATCCCAGTTCCATAGCCGCATGTTTTCGGCATACACCAGCCCGATACCGCCCGCGCCGACAAACCCCAGCACGGCGGCGGAGCGCACGTTCGACTCCATTTGGTAGAGGCTGAGCGCCAGAAAGGTGGGGAACGATTGGGTAAAAATACCAAAGCGGTGTTTTTGCAGGCTATTAGCCCCCACCGCGCTCAGCCCACGGCTCGGCGAACGTTCCACCGCTTCATGCCCTTCGGCGTACAGCTTGCCGAGCAAACCGGCATCCTGCATCAAAATAGCCAGCGCGCCGGAGAGCGGCCCCATGCCCACCGCCCGCACAAAAATAAGCCCCCATATCGCCATGTCGATGCCGCGTA # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 22561-21149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWW010000008.1 Dickeya oryzae strain FVG08 Dickeya_oryzae_FVG08_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 22560 32 100.0 36 ................................ AACAAGTAAAAACGCATCAAATACGACACCAGTGAC 22492 32 100.0 33 ................................ AGCTTGTCAAACATGACACCACAGTTACCAGAC 22427 32 100.0 34 ................................ TCGACAGCGCAAAAGTGCGCGTGCGAAGCGCGGA 22361 32 100.0 33 ................................ AACGGCATCAATTATGATTTTGTCATGCGTAAT 22296 32 100.0 34 ................................ CGAACAACTCGCCAACTCTCCGGTAATACCGGAT 22230 32 100.0 33 ................................ ATAAAACAACTCGTCACTGCGTTGACCACCAGA 22165 32 100.0 33 ................................ TGTAGTGGCAAGGCGGTCAACCTGCCATTGAAG 22100 32 100.0 34 ................................ ATAGAGAGAAACCAGCCGCCGGAACTGGGTTTCC 22034 32 100.0 33 ................................ ACGAAAGCGGTTTGCGTCAGGTCTAAATCGTAA 21969 32 100.0 33 ................................ CATATAAGATTGGATAGGTAAATAGCGACATTG 21904 32 100.0 34 ................................ TGCTGACAACTCAAATCAGACCTTTGGGCTGCGC 21838 32 100.0 34 ................................ TTGGGGTTGTGAGTGCCTTTGGATCGCTGCTGAA 21772 32 100.0 34 ................................ CCTGAATGAGCGGCGCATCATAAAGCTGAATAGG 21706 32 100.0 34 ................................ AAAGAAATCGACATTTTTTATCCTTGGGGTGGAA 21640 32 100.0 33 ................................ TCGCCATCGCTTGACTGGCATTGTCATTGTAAT 21575 32 100.0 33 ................................ TGGCTGGGTTGGTTGAGCGGCGCAGCGCGGAGC 21510 32 100.0 33 ................................ GATGTATTCGATTTTTTCTTCGTTATCCATCGC 21445 32 100.0 34 ................................ ATCCATTCCCATTTCTGTATTTTTTTTATATGAA 21379 32 100.0 34 ................................ AGGATCGTGGGAGAAATTACTCTAATGCCAACCA 21313 32 100.0 35 ................................ TATCGTTATTAGCGCCCTGCCGTCTGGGAGTCCAT 21246 32 100.0 34 ................................ TTATCAGGAGCAACAAGCGTTTGGACTGTAACGA 21180 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 100.0 34 GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Left flank : CAACAGACAACCGGAGCAACCCCTGTATGATGGTATTGATTACTTACGATGTCTCGCTCGAAGACGCAGACGGCCCCCGCCGCCTGCGGCAACTGGCCAAAATCTGCCTGGACTATGGTGTGCGGGTGCAATACTCGGTATTCGAGTGTGACGTTGACGCTGCACAGTGGGTGGTGTTGCGCCAGAAGCTGCTGACCACCTACGACGAACGCGTCGACAGCCTGCGCTTTTATCGCTTTGGCAAGGGCTGGCGTGATAAAGTTGAGCACCACGGAGCCAAACCGGCACTGGATATCTTTGGTGATACGCTTATCGTGTGACACTGCGCCAACCCCCAGTGCTCATCATTTTCCCGGCTGGTTGGCGCGGCATTATCCATTTGAATTACAAATAGTTTACCGTTTATTTCCATCACTACACCTCCGATACCTTCTCGCAGACATGACGTTGGCGTTATCTCCACGTTGACGCTATGCTACAAGCGCCTTGCCTGCAAGGCA # Right flank : CGTACAGCGATGGCGAGCGAATTCGATTTGCTATTGTCGCGCCTCACGCAGGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCGCGTGGATTGAAACATCGCCAGTGTGAAGCCGCACTCAAAGGTAAAGCGGTCGCGCCTCACGCAGGCGCGTGGATTGAAACCTTGCCGGTACCAAGCCCGTGACGCGGCGCAATTGTCGCGCCTCACGCAGGCGCGTGGATTGAAACGAATGATGGGAATAGCTGGGCTATTATACACAGTGTCGCGCCTCACGCAGGCGCGTGGATTGAAACATCAAAGACATTGTCGTCGGCGATATGCGTAATGGTCGCGCCTCACGCAGGCGCGTGGATTGAAACATACCAAGTTTTTTCATGCCACCAGGCATGAGGTGTCGCGCCTCACGCAGACGCGTGGATTGAAACGACATCAAGATGGGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 72706-69908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWW010000020.1 Dickeya oryzae strain FVG08 Dickeya_oryzae_FVG08_contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 72705 28 96.4 33 .............C.............. GGGAAGTGCAATGAGCGTCATTACTGCCGTAGT 72644 28 96.4 32 .............C.............. TGTCCTCTCAGATCGAGGGAGGCCCTTGGTTT 72584 28 96.4 32 .............C.............. GTCTGGATCTGTGTCTATGGCGGCGCCGATGC 72524 28 96.4 32 .............C.............. GTGCATAGAGCGTGCGGGGTATTGCATACAAT 72464 28 96.4 32 .............C.............. ATATCAAAAATATTCTGAGCCTCGAATGATTC 72404 28 96.4 32 .............C.............. ACCGCGCTCGGTAGCGCAATGAGCCAGGATTT 72344 28 96.4 32 .............C.............. GGTATTAGCAGTTAGGGCGTTAACAATTTCAG 72284 28 96.4 32 .............C.............. GCAATGATTTGTATGCTCTCAGGGAGTTCCAT 72224 28 96.4 32 .............C.............. ACATCGACGAGGATGGAAGGGCTTTTCTCTGC 72164 28 96.4 32 .............C.............. GAACAGGTTGTCGAGCCGGAGGAAAAACAAAT 72104 28 96.4 32 .............C.............. GCGAGCAGAAAACACTGTGTATGTGGGTCAGT 72044 28 96.4 32 .............C.............. GCAACTAACACCGGCGACTACTCAGCCGCAAC 71984 28 96.4 32 .............C.............. AGAATTATGAGGTGATTAGTGAAGAAAACATA 71924 28 96.4 32 .............C.............. GGCACAAAGACAATCGGCAATGGCGTCAACGT 71864 28 96.4 32 .............C.............. AGCGCAACATGATTCCCGCGCAAATTACGCAT 71804 28 96.4 32 .............C.............. TTCGCGTGCTCGTTGTCGTCAAGGTCGCGTAG 71744 28 100.0 32 ............................ TCCAGTCCAAATGGAGTCGAGACGAATATTTT 71684 28 100.0 33 ............................ CGCTGACAAACAACGCGCGGCCGCAACGATTAT 71623 28 100.0 32 ............................ ACGATCTATATTTAATGTTCCGCGCTTGTAAT 71563 28 100.0 32 ............................ CGCGTAATGCGCGTGAACTTTACCCGGAAGAG 71503 28 100.0 32 ............................ TGCCAGCGCCACATGCGACGAGCATTTTTTAC 71443 28 100.0 32 ............................ TCAATGGCTTTTGTGGCCCAGCCATTAGGGGA 71383 28 100.0 32 ............................ TGAGCGAGGTCGTGGGAGCAAGGCTTTTAGAG 71323 28 100.0 32 ............................ AGCACTCACCCAGCTAATAACAGGATATTTGC 71263 28 100.0 32 ............................ CGATTGAAGCTGCACTGTTTGCGAATACTGCG 71203 28 100.0 32 ............................ GATACGTCATATTTAACGCACTATCGCCATAT 71143 28 100.0 32 ............................ GCTCCAGTGGCACAAATACCGCAATTGCACAT 71083 28 100.0 32 ............................ ACGTTTTGCAGCTGATGAGCGAGACCCGGCTT 71023 28 100.0 32 ............................ ACATGCGACCGCCCGGGAACACGAACCCGTAT 70963 28 100.0 32 ............................ CAGTCCGCCGCCAGCAACACCGGCAGCCACTC 70903 28 100.0 32 ............................ GTGAGCATCGCCAACGCCTCTGACATCGGCGT 70843 28 100.0 32 ............................ CTCGCGCCGATGATTAAAGGCAAGGGAAAAAT 70783 28 100.0 32 ............................ AGAGTGTAAAGATTGCTATCGCACTCCACCAG 70723 28 100.0 32 ............................ ATCCGTGCACAGACTCACGCTGTTTATCTGGA 70663 28 100.0 32 ............................ TCGCGTAGCCCCATGAAAAACATCATAGAGCC 70603 28 96.4 32 .............C.............. ATTTTCTGAAAACCAATTTGATGCGTATTCGT 70543 28 96.4 32 .............C.............. CCAGGTGCATGGGGACCCAGCAAAGAAAAGGA 70483 28 96.4 32 .............C.............. AACTATGCTAAGGGCGCGCTGAATAACTAAAT 70423 28 96.4 32 .............C.............. TTAACATGTCCATTTGTGGCAGCAACGATGGA 70363 28 96.4 32 .............C.............. GACTTAAAATCTCATGCGCCACGTTGATTCCT 70303 28 92.9 32 .............C.............G CATTACATCCGGGCGAGTTACCGCGATTGGAC 70243 28 96.4 32 ...........................G TCACCAGAAATCTCGCGTGAAGAGTCGCCTGA 70183 28 96.4 38 ...........................G GAAATTCGATGACCCATACCCACGGGTTAGCAAGTTCA 70117 28 89.3 32 C...................A......G AGCGTATAGACGCGACCGACATCCTTTTCACG 70057 28 100.0 33 ............................ TCCGTGAAAACCGCGTCGAGAGACTTTCTCTCT 69996 28 100.0 32 ............................ AGGATTGCATCGACATACGATAAATTTTTTTC 69936 27 82.1 0 ...........T.C.........-..CG | GG [69913] ========== ====== ====== ====== ============================ ====================================== ================== 47 28 97.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGTACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTACGCGACTATAGCACCATCACCGATGTATTAACGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGCCGAATGAGCGCGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTACCGCTGCGTAGCCTTTCCAGTGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTACAGGACAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAGGTTTTCCCGGAAAAACGGCGTTTTTTCTTTAACAATCAGGCGATAAGCGATTATTCGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCGCGGCATGGATGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGCAGCACCCAGGCTGTTGCCAACAGCCCATCCCCGGCGGGCAGAGCCGTTTCCTGCAAGGAAAAAAATCCCCCAACCGTTACCAGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCCGCGACGCGCTGCACGTTGTGATGGTTTAACCCGGCGATGCAAACACGGCCGCTGGCGAT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 81297-83005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJWW010000020.1 Dickeya oryzae strain FVG08 Dickeya_oryzae_FVG08_contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 81297 28 100.0 32 ............................ ATCGATATACGGGTATTCATCCTGCGCAATGT 81357 28 100.0 32 ............................ AGCACGCCTGCTGCTTCCGCTGCTGCTTCGAT 81417 28 100.0 32 ............................ TGACAAATGGCCGCCGTTCGATTGCATTTCGC 81477 28 100.0 32 ............................ ACCCTCGTCAATGTGGACAATCATCCCAACGG 81537 28 100.0 32 ............................ AGCGGAAATGCCGCCCCACGCTTTAAACTGCT 81597 28 100.0 32 ............................ AGCGTGATCGTCGTGCCAATGCACACCATTGG 81657 28 100.0 32 ............................ ACCGTATCTGCGGCGGACACAACACCAGAAAC 81717 28 100.0 32 ............................ GATGCCATCGAACCAGAACGAAGCCACGCCGA 81777 28 100.0 32 ............................ ATGAGTCGTCACCAACATAACCATTAGCATAT 81837 28 100.0 32 ............................ AGACGCAGATTGAAGAAATTTACCCCATGTTT 81897 28 100.0 32 ............................ TGCTATTCCTGATGTGGATTGATGAAAACCCG 81957 28 100.0 32 ............................ TGCTACTGCGAAAAAATCACCAGATAGGCTGG 82017 28 100.0 32 ............................ GAAGCTTGTTCTTGCCGAACAAAGCGTTTCGC 82077 28 100.0 32 ............................ TATCATCAAAACCGCCCCGCGCCCGGTCTTGT 82137 28 100.0 32 ............................ GCCGAATGTGCCGGGCGACGATAACAATCCGA 82197 28 100.0 32 ............................ CGAAGACCATTGTTACGATACGGTACGTTATC 82257 28 100.0 32 ............................ AATCACAAATGATGCCGGCGCGACACCGCAGC 82317 28 100.0 32 ............................ CGGTCGGTCGGATAATCGAACGCATGTTTCGG 82377 28 100.0 32 ............................ TGTTCGGTCATGGCGGCAAGCCTTCAAAAGTC 82437 28 100.0 32 ............................ GAAGACGGCAGCACCAAGACCAACAAAAAGGG 82497 28 100.0 32 ............................ AACAAATGCGAAGGGGCGTTCGGGCTTGCCAT 82557 28 100.0 32 ............................ ATATCCCGAACGGCGGAAGTCGCGGCGATGAT 82617 28 100.0 32 ............................ ACCTAAACATAGAATTTAATCTTATGTGGAGT 82677 28 100.0 32 ............................ GATGTATCTATCTGCGTCACGTTCGGTATGTT 82737 28 100.0 32 ............................ AGAAATTTAATCAGATCGCGGCGCAGGCCAAC 82797 28 100.0 32 ............................ ACTTATCCCACAGCGTGGTGGCCTGTGTTAGC 82857 28 100.0 32 ............................ GGCATTAGCCGCTGCGGTGAGCGATTAATGTC 82917 28 100.0 32 ............................ AATCTATTTCTGATAATAGTAGTTATCGGAAA 82977 27 78.6 0 ...........CAC.........-..CG | GG [82998] ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.3 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : CGTGACCGAAGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACGGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCACGCAATGATACGCAGGGTAATAGTTTACCAGAAACATGTAATGCACTGGAAAGTAACGAGAATTAACCTAGCACAGCCCCAACAGGAAAGTGAATAACGGCCAAAATACTTTCCGTATTTTCATACCCTTTTTTTCCGACGTCTTTTTCGGTATTGAAAAATCAATCAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCGAGTCAGAATACAACGGGTTAGAGTTAACGGGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCACTCTACCGATAATCCTCACTATCCTAACGCCCGGATCTAACGCCCGGGAAAGGGCAACCTGTCAGAACGACGCCCAATCACTATTGCTACCCGCCGCCGCCGTGGCCCGCTTTTCCGGCAACGCCGGAGATAGCTCCGCTGGCTGACGGGCTGGTGGCGTTGTGCCGCTGTTGCCCTGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //