Array 1 1112110-1116455 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFWN01000003.1 Clostridium perfringens strain NCTC8799, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1112110 29 100.0 37 ............................. TTCTAATGCCTGTGTCAGAAACAACTATCTCATTATT 1112176 29 100.0 37 ............................. AAATTAATTTATGTATATTTTTATGTACTATTATGTA 1112242 29 100.0 36 ............................. GTTAGTGAATATCCAACTGCCTTTTGAACATAATTT 1112307 29 100.0 36 ............................. TCGTCAGAATAAGTTTTTTCTACATTTTTCTTTACA 1112372 29 100.0 36 ............................. GGTGACGACCTACAAATAGATTTCTCAAGTGGTGAG 1112437 29 100.0 37 ............................. GGAATTTAATCTCAACAGAAATATCTAATGCTTGGGA 1112503 29 100.0 36 ............................. TTGGTATCATTATAAAAATGTTTTACTTTTAATTCG 1112568 29 100.0 36 ............................. CCAATTAGTAACGCTTCGCTCTATCTGCGATGCCAC 1112633 29 100.0 36 ............................. TTAGTAAACGTAAAAAAACTTTATGCAGCTCATATA 1112698 29 100.0 37 ............................. ATCTCTGCTCTTTATAAACCGCAAAATTTGACTTTTG 1112764 29 100.0 36 ............................. ACAAAATTATAAAATTTAAGAGCATAATAAAAAACA 1112829 29 100.0 36 ............................. ACAATACGTTCATTAAGAGTACACTTATCATTCTGA 1112894 29 100.0 35 ............................. TTTTAAAGGCTACGCTGCGCTATGTCTGCGACGCC 1112958 29 100.0 37 ............................. ATGAATACAAGAAGAACAAAAACAACAACTATAAAAA 1113024 29 100.0 36 ............................. GCTATAGAAACTGGAATTATAATATCACCAGTATTT 1113089 29 100.0 36 ............................. GCAAGTGGTAAAAGAACACTAGATGCTACTGCTCCA 1113154 29 100.0 38 ............................. CCAACATAATGATAGTGGTCAAGTAATTTTTTCTTATT 1113221 29 100.0 36 ............................. ATATTCTGATGAAGAAGTTTTTTCTAACTTTGATTT 1113286 29 100.0 37 ............................. TGATTGGTGGGGGAGAATTTGAGTTTGAACCACATAA 1113352 29 100.0 36 ............................. TTTAAATCATTTGCCACTTGTCCAACCTTTCCCATC 1113417 29 100.0 36 ............................. TTTTTCTTTTAATAAATAATTTATCAAATTCTTTAA 1113482 29 100.0 37 ............................. ATAATAGTAAATATTCTTAGTTCTTTTGGTGTTGTTG 1113548 29 100.0 37 ............................. GGAGAATTTGCTGTAAAGTTAGGAGTTAACCCTAAAA 1113614 29 100.0 36 ............................. GAAATTGAATAAATCTAATGTCATTCTAATGGTGTA 1113679 29 100.0 36 ............................. TTAAATTAAATATAAATTCAAAGGTAGTAACTATTG 1113744 29 100.0 36 ............................. TTTTATGAATTTAACTTTATAATTTTTATACTCTAT 1113809 29 100.0 36 ............................. TTCTAAAAATAATAAAGGCCCTTTTTACTACTTAAT 1113874 29 100.0 37 ............................. TCTATAGGTTGTAAAGTAATATCTCCATTTTTAACAA 1113940 29 100.0 36 ............................. TTATTAACATATGGAGAAAACAATATAAGTTTTACT 1114005 29 100.0 36 ............................. TTTTATACTGAACTATTAAAAAGCCATTACAGTCTG 1114070 29 100.0 36 ............................. TGTTAGAAACGCTTGGACTTCTTCTGCACTTTTAAA 1114135 29 100.0 37 ............................. CCGAAAACAACATGACAAAGGGGAACAATACGAGTTA 1114201 29 100.0 38 ............................. ATGGATAAACTATGAATTTAAAATAGTAGAAGAAAAGG 1114268 29 100.0 36 ............................. AGATAAAGATAAATTTGTAGCAGCAGTTTATACAGA 1114333 29 100.0 36 ............................. GGTGGTAATGGTAATTCAGGAACATCAAAAAGCTTA 1114398 29 100.0 36 ............................. TTATGAATATAATCCATATCATCTATTTTTCTTTCA 1114463 29 100.0 36 ............................. ACTTGAAGCAAACAACCATTTCCATTTTGAGAACCA 1114528 29 100.0 37 ............................. AATGAAACATGGTACTACAGAGCAAGAGCTGTTAATA 1114594 29 100.0 36 ............................. CACCTTAACTATCAAGTAAATCATCTAATATTTCTC 1114659 29 100.0 36 ............................. GCATACAAATAATGATGGTTCGGAGTGCCCTAATCT 1114724 29 100.0 37 ............................. TAAGCTGTACTGTTCCATGCTTCGTTTTTTCTTTCAC 1114790 29 100.0 36 ............................. GGTTTAAAGTTATTTGGACAAAATAAAGAGTTAATT 1114855 29 100.0 36 ............................. ATGTAATCATAGTATTGCATGCTGAAATTTTTTCTG 1114920 29 100.0 36 ............................. GTTACTATCTTTACATCATTATCAATAAATTTATCC 1114985 29 100.0 37 ............................. TTTTTATTGATTTAATATTAACATAATAAAAATAATT 1115051 29 100.0 36 ............................. TTATAGAAAAATATAAACCTGATTTCATAGTTTTTA 1115116 29 100.0 36 ............................. TTGTATTGTTAGAGTTTATGCTATTACAAGTAAAGG 1115181 29 100.0 38 ............................. AAGATAAGATATAATCATATTTGCGAGATATAATTAAG 1115248 29 100.0 36 ............................. TCTACTATATAAACAACCTTTCCTTCCTTAATGGCT 1115313 29 100.0 36 ............................. TTTTTAGATGCATAGTTTAAAGTATCATATTCTAAG 1115378 29 100.0 36 ............................. ACGGTGGTAACTCAGACAAGCGATTTGAAGAGTTAC 1115443 29 96.6 36 .......................A..... AAAGATTTATAATTTAATCTTTTTTTTAATGTATGT 1115508 29 100.0 37 ............................. GGAATTACAGAATACATACTAAAAATTAATACAGATA 1115574 29 100.0 36 ............................. TATATTCCTTCTTCTTTATCTTCTTTTACTGTTGAA 1115639 29 100.0 36 ............................. TATGTCAGATTGTATTTGTTATGGAAAAGCAACATG 1115704 29 100.0 36 ............................. TGACAGTATATAAGCTACTGACATTCCACCAGCTAT 1115769 29 100.0 37 ............................. AGATTTATTGATAGACATTCCCAAAGCTTCACCTAAC 1115835 29 100.0 36 ............................. ATATTCAACCTTTTATTTTGTTTCCAATACTTCCAA 1115900 29 100.0 36 ............................. TATCTACATTTTGCTTTACAAGTTCTAAATCACTGT 1115965 29 100.0 36 ............................. TAGGATAGTTATCCTCATTTATTACATACTTTTTAT 1116030 29 100.0 37 ............................. TTCTTAGAATAGCTTTTATATTTTCTTTATTTTCTGT 1116096 29 100.0 37 ............................. CTTTGTAATACTATTTTTTTAGAAGGAACTACCCTAG 1116162 29 100.0 36 ............................. AATGGTATATATGAAAGTTTTAATCAAGATGACCAA 1116227 29 100.0 36 ............................. AAAAAAAAGTATTATGGTTAATGGAGGATCATGGAG 1116292 29 100.0 37 ............................. ATACAGAGAAGGAAAAGGGACAAGCTTCAGATAGCTT 1116358 29 100.0 38 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCATG 1116425 29 82.8 0 T................GAA....C.... | A,C [1116428,1116452] ========== ====== ====== ====== ============================= ====================================== ================== 67 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTCAGCATTTTGAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATTTAATAGCTCCCTTGAAATTTCCTCGAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //