Array 1 190973-192465 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPZ01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 119 NODE_4_length_421473_cov_20.4877, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 190973 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 191034 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 191095 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 191156 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 191217 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 191278 29 96.6 32 ............................A TGCCATCGCCGAGGGAGGGCCTCCAGATCATC 191339 29 100.0 32 ............................. CTGAATAATTCGCCGTAGGTAGCCAGCGCAAT 191400 29 100.0 32 ............................. CCGTCGCTGACGAACTGACTTTTCTTCATCTC 191461 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 191522 29 96.6 32 ............................A CATTGGGCACCGTACCGTTGCGAATACGTCGC 191583 29 100.0 32 ............................. CCAGTAATCACAGACTTTCTCCGTGTCTTCAC 191644 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 191705 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 191766 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 191828 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 191889 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 191950 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 192011 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 192072 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 192133 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 192194 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 192255 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 192316 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 192377 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 192438 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 208601-209301 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPZ01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 119 NODE_4_length_421473_cov_20.4877, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208601 29 100.0 32 ............................. TGTCCAGGCGATTTCCTGGAACCTGGCATTGC 208662 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 208723 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 208784 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 208845 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 208906 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 208967 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 209028 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 209089 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 209150 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 209211 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 209272 29 93.1 0 A...........T................ | A [209298] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //