Array 1 9398-11261 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPNC01000066.1 Porphyromonas levii strain AF5678 NODE_66_length_11294_cov_29.659353, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9398 30 100.0 36 .............................. ACGCTTCGCCCTCTCTTCGTAATCCTCTACTTTCTT 9464 30 100.0 36 .............................. ATAGCTGCGTATCGTGCGTATATCCCACGTGTGCAA 9530 30 100.0 37 .............................. TGCGAGGTGGCGGGGTGGTTAGAGGTGGCGGTACACT 9597 30 100.0 37 .............................. AGCATACGGGCTGTTCTACTCTCACGAAATAGACGAT 9664 30 100.0 36 .............................. TGGGGATACCAGCTCCTATTGTCATGAGCTGGAGCG 9730 30 100.0 36 .............................. CAGACACCCTTTTTGACGTCAACAGCCGTAAAAAAC 9796 30 100.0 35 .............................. ACAGATACAAGTAGAGCATATGCAGACACACCAGT 9861 30 100.0 36 .............................. ATAAAGGCGAGAGGAGGGCAAACAACCCTCCTCTCT 9927 30 100.0 34 .............................. CCTTTGGAGGTCTAAAACAAGTCAAAGAAGACGA 9991 30 100.0 36 .............................. TGCCAAAGAGTTGGCGGGAGAAAAGCCAAAGAAAGC 10057 30 100.0 37 .............................. ATGGCACCTGATTGGCTCGGTCTCTTTCTTTATTTCC 10124 30 100.0 35 .............................. TATTCACCTAAGATAGAGCTGAGCAACGCTCCAGT 10189 30 100.0 35 .............................. TAGTCTCATCTGTTAGTATGTATTTCTTTTCCATC 10254 30 100.0 34 .............................. TTCTGTATGCAGTAAGTTGATTCATCTGCTAAGC 10318 30 100.0 34 .............................. TGGGGATACCAGCTCCTATTGTCATGAGCTGGAG 10382 30 100.0 36 .............................. AGGACTATCACCAGCTTTGGAAGTGGGCAACTGGCA 10448 30 100.0 36 .............................. CGCCTGACGGCTCCGAAGGCGGTAGAAAAGGCATGC 10514 30 100.0 35 .............................. ATCTGCAGTACCTCCTTGATAGCTTGCAAAAAGGC 10579 30 100.0 35 .............................. AAGCCTTCGGAGCTGCGCAAGCTGCGAGGGCTTTT 10644 30 100.0 34 .............................. CACTATGCCCCCCCTACTTGTTAGCCTTTTTAGC 10708 30 100.0 35 .............................. TACCGAAACTTACATATAGCTTCAAGGAAGACCAA 10773 30 100.0 35 .............................. GCGGTAACATTCACGCAAGCGGTGCAGGGTAGTAA 10838 30 100.0 36 .............................. AGTTGTTTTGCCATGTTCTCCGCACTTCCGCCCATA 10904 30 100.0 36 .............................. CGTTGCACCCTGGCATTGGTAGATACACTAGCCCAT 10970 30 100.0 38 .............................. CTTGTCCTTATTTCTAAAGGTTTCTTCAATCTCTGATG 11038 30 100.0 34 .............................. AATACACGTATATGTGTCCAGGCTGGACACGCCT 11102 30 100.0 36 .............................. ATGTGCTGCAGGCAGTACAAAAGCTAGAGCGTGAGC 11168 30 100.0 34 .............................. AATACACGTATATGTGTCCAGGCTGGACACGCCT 11232 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 29 30 100.0 36 CTGTTAATCGTACCATACTGGAATTGAAAC # Left flank : TAAACAGTGTGTAAAGCTACACAAAAAAAGTGATAATGGGATGATTATTAGTAGGCTCTCCACTCTTTTTAAGGAGTGTTAGAGCAGTATGGATGCCCCGAGATCATCAACTCAGACCAAGGCGTACAGTATACGAGCAAGAAGTGGGTAGAGCTACTAGAGGAAAAGGGAATAAGGATAAGTATGGATGGGAAAGGACGTTGCAAAGACAATATTTGGATAGAACGCTTCTGGAGAAGTATCAAACAGGAACATATCTATCTTAATCCAGCCGATACAGTCTCAGAACTACGGCAAGGAATAGGGAAGTGGATAAAGTTCTATAACTATGAGCGCCCCCACCAGAGTATCACCAAGCTACTCCCTGCCATGGAATATGGAATAGTAGTAGCTGCATAACAATAACCAATAACGATGTAAAAAGAAAGAAAATGTGTACGTTTGTGACAGTGATAGAAAAAAACACTAGCCCGTTGTCGAAAAATGGGGAGTACTATAAT # Right flank : ATGTGCTGCAGGCAGTACAAAAGCTAGAGCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 3013-164 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPNC01000174.1 Porphyromonas levii strain AF5678 NODE_174_length_3752_cov_15.763310, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3012 30 100.0 35 .............................. ATGTAAGTATCGAAGATGAGCAAAAGGATATAGAG 2947 30 100.0 35 .............................. GGCGAGAAAAAACCTTGAAAAGATAAAGCAGGAAA 2882 30 100.0 35 .............................. ATCTAAGCAAGCCTACTAAGTACGAGGAGGGCGAT 2817 30 100.0 36 .............................. TCCGCATGAGCCTCGCAAAGCTCTACAAAGTTTTCC 2751 30 100.0 35 .............................. GCAGTATAGGTGCGTGGGCGACAGCAAGCTCCACC 2686 30 100.0 36 .............................. TCGTCTCAATCACAGAGGGCTTGATACGCGCCGAAA 2620 30 100.0 35 .............................. TTGATATCCCTCTTAACTCCTACGTGGAGTATGAG 2555 30 100.0 37 .............................. TTGCAATCAAGGTATTCGACTAGCCTCTCCTTTGATG 2488 30 100.0 35 .............................. AAGAAGTACAAGTGGAGCTTGATTAAGGGAGCGGA 2423 30 100.0 37 .............................. GTACTACACTAGAAGAGTGGGAGAAAGAGAAGTTCCA 2356 30 100.0 35 .............................. TTCATATTTTTCTGGTGTTACACTCTTTCCGTTGT 2291 30 100.0 37 .............................. GCGCTTTCTTCTGGATCGCATCCCAGTTGTCTACCAG 2224 30 100.0 36 .............................. TATTTTGACGTATTGCAGTACCTCACAAGCAATAGG 2158 30 100.0 34 .............................. TAAGCACTGCACTTACTGTTGCAGCGCCTACACC 2094 30 100.0 34 .............................. CTTGCGACCAGTTAGGCTACAAGCCTATTACCCT 2030 30 100.0 35 .............................. AATGAGTGTTTGCGCCCTGTTTAGCTCTGTATCCT 1965 30 100.0 34 .............................. ATGGTATTGTTACAGCCGAGGAGCAGGCACGCAT 1901 30 100.0 37 .............................. TGATACCTCCCATCTGCACTATCATCAAGTGCAGATA 1834 30 100.0 35 .............................. GAGCAGGATAATAATCACAGAGGTTGCGCAGCTCA 1769 30 100.0 36 .............................. AGCGAGTGACCATCACCAAGGGCATCATCCGTCACC 1703 30 100.0 35 .............................. GAGGTGATGGTGCGTTACGTGGTTACTTCGCTTGC 1638 30 100.0 35 .............................. GTCGTAGAGATGCAGAGAACAAAGGCTCTAGGATT 1573 30 100.0 35 .............................. AACGTGTACGTTGCTAAGTGTGAAGAGGAGCACGA 1508 30 100.0 35 .............................. AAGACAATAAAGGAGATAAGTAATGCAGGCTTCTT 1443 30 100.0 36 .............................. GAGAATATCTGTATCTGAAACGAGTATGGGAAGATA 1377 30 100.0 37 .............................. AAAGAGCGAAGACAATAATCTGGTGGGACTGGTCTAT 1310 30 100.0 35 .............................. TACTTCATAAAAGACAACTTTGACGTAAGCGAAGA 1245 30 100.0 36 .............................. AACTGGTATCGTAAGAATTACCGCAAGACCACCGTC 1179 30 100.0 34 .............................. ATGATGGAGACTTCAAAGGTATAGATGCTGTTAT 1115 30 100.0 36 .............................. TGGATACTCAGGTACTTGCGATAGGCAAGGGTACAA 1049 30 100.0 36 .............................. GCACAAGACAAGGCTCCAGAGAATGAGTGGACGACC 983 30 100.0 36 .............................. GCTAGAGAAAGAGAGACAACAAGAGCAACAGCAATC 917 30 100.0 35 .............................. ATACTTACAAGGTAGAAGCCAAAAATTCTTCGTGG 852 30 100.0 36 .............................. CTCTGCGCTTTCTTGGAGTTTATCCGCCCTTCTCTG 786 30 100.0 35 .............................. CCGCGTATCTCCACCGTATCAAGATTCGAGGGCAA 721 30 100.0 36 .............................. TTTCTATTCGTCAATAACGACGGGACAATGACTTGG 655 30 100.0 36 .............................. GTGTGTCTCTCATCTCATCTTTATGCCTTTAATATT 589 30 100.0 36 .............................. GTTTTAAAGCCAGATAGAAGTGTTAGTCTAAAAGTA 523 30 100.0 36 .............................. TTGTATAATCTGGAAAGATTAATCTATAGAAATGTA 457 30 100.0 37 .............................. TTCTTAGAGGTAGACAAAGAAGCCTACTTTCAAACAC 390 30 96.7 36 .............................T ATAAGGGGCTATTCAGCGAAGAGGGTAGTATAATAA 324 30 100.0 35 .............................. AGGTGTAAAGAGTGGTAAGTATCCTAGAGAGCACG 259 30 100.0 36 .............................. GCTGCATGAGATTCACAAAGCTCTACAAAGTCTGCC 193 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 44 30 99.9 36 CTGTTAATCGTACCATACTGGAATTGAAAC # Left flank : ATAATATTTTCATCAAGACAAGAGGGGTGGTTAGACAAAGAGATTATGGGAATTGAGAAAGCATCTACCGATAATTTCTTGTGAGTATTTTCCTATTTCGAATTACACGCCAATGCGTAAGGATGATAGAGATCATAGACATTTCGAAAACTAATAATATCTTTGTTTGGGTCGCATCAGACTAATAGATGTAAATCATGGTTAGCATTTTAGTGCTCTGTAGGACAGTTCCCATATCGTACAATATGTGGTGCGCATAAATTGATCTATAATGATGGGTTATTCTCTAAATGTCTGTCGATACTGGTGTTCACTAGTATTTTAGACGGTCTATGAAAATAGGAGGAATATTATGTTATTGATAATCAGAAGAATGGGCTGTTGTCGTAGGTGCACTCTTATTATACGATTAGGGTTCGACGACATCTTCCAAGCAAAAAGTGCCAAATAAATTTTCTAACAGACTTGTAACCAATGATATATTATAGTAAATTTGACGA # Right flank : CAGAAAGCGCAGAGCGGCATCAAGACAAAGCGGACATCTATAATACTCCCCAAAAACTAGACAACTCCAAAAGTGGTAGATTTGAGAGTTGAGATGGAATTAATTGTCATTTTCCGATGAAAAGAAGAAAAAGAGAAGTTTATGGGACGAAGAAGTAAATACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTAATCGTACCATACTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //