Array 1 425303-426733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZC010000003.1 Salmonella enterica strain FUA10060 NODE_3_length_548313_cov_36.222486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 425303 29 100.0 32 ............................. CCCGGTTTTACCGCCAACACTCACTATATTGT 425364 29 100.0 32 ............................. CGTTGCTGGCTATTCGAACTAACCTGATTGTT 425425 29 100.0 32 ............................. GCCTCAGCATTGTCATAACCCCACGCCTGGCA 425486 29 100.0 32 ............................. CGGCTCGACCGGGAGCTTGCCGGCATCGTGGA 425547 29 100.0 32 ............................. CAATCATCTGATTTTTTATCATTGAGAGATAT 425608 29 100.0 32 ............................. GCAACTTCTTATATGTAAAAAACCGTTATGAT 425669 29 100.0 32 ............................. TCCGGGGAAAGAACTCGCCTCGTCCAGCGTCA 425730 29 100.0 32 ............................. GCAATATGAATAACAACGTACCACTCATCGCA 425791 29 100.0 32 ............................. GAGCACTTTTACTGTAGGACTTGTATGAATCT 425852 29 100.0 32 ............................. CGGCCGTAGCGCCGCTCAGTCCGGGGGATGGT 425913 29 96.6 32 ...........A................. CAATTGCGTTCTTGCTTATGCCCAGCGACTTA 425974 29 93.1 32 ..G.........T................ ATTTCAAACACTCCGGGTCTGCCAGCGCCTCA 426035 29 96.6 32 ..G.......................... CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 426096 29 96.6 32 ..G.......................... TATACAGGATTCTCACACTTTGGTTTGGTCGA 426157 29 96.6 32 ..G.......................... CGTTTTTTTTATTTGTACTATTGTCAGTACCC 426218 29 96.6 32 ..G.......................... CGGAAACAAACAAAGTTTTGCGCGATTCCACC 426279 29 96.6 32 ..G.......................... CACCAGGTAACAATATCGTCCCCGACCTTTAT 426340 29 96.6 32 ..G.......................... GCGAAATTCCCCAGATACCGCGCATCGGCACT 426401 29 93.1 32 ..G.........T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 426462 29 93.1 32 ..G.........T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 426523 29 93.1 32 ..G.........T................ TTGCCACAACCACAATGGATCAGGAGCAATTA 426584 29 93.1 32 ..G.........T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 426645 29 93.1 32 ..G..........T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 426706 28 86.2 0 ..G.........T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 96.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTACCTCGCCTTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGCGCTGACAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATTATAGTCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 443494-444804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZC010000003.1 Salmonella enterica strain FUA10060 NODE_3_length_548313_cov_36.222486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 443494 29 100.0 32 ............................. TGGCTCCAGCCCATAGTTATCTTATGCGTATT 443555 29 100.0 32 ............................. TCGCCGCTGCACACCGGCAGCGCATACCTTTT 443616 29 100.0 32 ............................. GTTGTGCTGGACGGTGACGGTAAAGGTGATTA 443677 29 100.0 32 ............................. TCTGTTCAGACCGTCATTGGACTGACGTTGAT 443738 29 96.6 32 ............................T TACGGGTGGCATACGACAGCACAGCGCGTACC 443799 29 100.0 32 ............................. CCCGTCCACTGCTGGATGAAATGATGGAATGT 443860 29 100.0 32 ............................. GGCACGACGCACCTGCTAAAAAATACTACCGC 443921 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC 443982 29 100.0 32 ............................. CGCCAGCGCTGAGGTGAATTTTAACGGTGTCA 444043 29 100.0 32 ............................. AAACAACTCTGTCTATTTTATGAATAGTTAAA 444104 29 100.0 32 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATG 444165 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 444226 29 100.0 32 ............................. GTACGTTGCCAGATTGCTTTCAATGATGGCGT 444287 29 100.0 32 ............................. GCCGGGGTTTCCCGGAGGCATTCTGATGAAAG 444348 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 444409 29 100.0 32 ............................. GAGCATACGGAAATTAAAGGGGTTAACGATCA 444470 29 100.0 32 ............................. CGCGCAACATTCATTACTGCCCACTATTCAGA 444531 29 100.0 32 ............................. AACGCGCCGCCTTAGAAAAACAGCGAGGGGAT 444592 29 100.0 32 ............................. CGTCCTGTACGTGGTAGCGATAATCGTAATAA 444653 29 100.0 32 ............................. GCTGATACGCAGACGATCACAAACTATATGGG 444714 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 444775 29 96.6 0 ............T................ | A [444802] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTATTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //