Array 1 71713-71900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSUW010000012.1 Brevibacillus sp. HD1.4A 12, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 71713 37 100.0 37 ..................................... CTGAGCTGCGGACTTCGATATCTTCAACCGGGAGAAA 71787 37 100.0 40 ..................................... TGCGAGGTCCATCAGCGTGTCCTCTATCGATTCGTTCACG 71864 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 3 37 100.0 39 GTTACATTGGAGACCCGAGAAGTTAGGGGACTGAAAC # Left flank : GAGAAACTCGTAGGGAACGCGAGTGCAACTGAGCGAGGGACTTGCTGCACATGAGCCGTTTTCAGTATGGACGGTTGTGTGCAGTTTTTTTGTGGGATTGTAGCGGAATGGAATGAAATGAAGTGGTCTGTTCACGCAGGGGGGATTTGTACGGGAGCGGACTTGCCGTATTAAAGGAGAGTGATTTGTTTGGGGAGTTGGATGAAGGAAGTGGCGGTTGAAAGATATTTGCGTTTGTGGATGAAAAGTTGTTTGGGTGCTGGATCGTGTAAAGAAATGGATAGATGAGATGGGGGATAATGTTTTATTATAAGTATGAGGGCGAATGGTTACCCTGTAGCGAGGAAAAAGAAATGAACAAGATGCGTACAGCCGATTTTCGAGGATAGGGCGTGATTTTTGACGAGAAGTGAATCCTCGAAAAAAGAGCGGGTTCTTGTTGGCAGTGAGTATGAGGAAAGCCTTGGCGTTATTGAGGTTAAGCATGGTAGTCAAAGTCG # Right flank : CCTTGGACGTGGTGTATCCACCCTTGCTTGAATCTGGCGTTACATAGTTAGCAGGCTTGTACGATTGATGTTCACACACCTTGATGGAGAAAGGCAGCATTCCCTGCGCTAGGGAGGGCAGTTTTAAGAGTAAGACAAGTTGATTCCTAGCGGTATGCTGAGAAGTAAGACATTCCAAAAAAGAAACGGAATTGATCACCCGTGCCCTTCGTGTTTTTCAAAAAGATTCGATCTGGTCAATAAAGTAACGCTCGATGCTAACAACTATGCCTAACCTTAGGTAGAAAGGCACTTCATTTCCGACTGACTGAAATATCTGAAGTGAACATTCCCCATATATATTTGGAAAAATGAAATACCGCCCCAGTGAAAATAGAAAACGAGAGCAGGTTGAAAAACGATTTGGTATTATGTTAGTTCTGAAAGTTTAAGCAGTAAATTGGATTGTTCCTCATGGGGAATTTGGATCGTTCGAGTGGCGATTGGAGCCATTTTATGCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGGAGACCCGAGAAGTTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 72658-74043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSUW010000012.1 Brevibacillus sp. HD1.4A 12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 72658 37 100.0 38 ..................................... CAATACAAAATCACTCCGGTGATTCCAAAACGCCTTGA 72733 37 100.0 38 ..................................... GAGTTGCGACAAGTCGTTCTCTTCGACGATCGAGTTTA 72808 37 100.0 37 ..................................... CAAACCACACATGCTCTACCTGCGATACTGGCTGAGA 72882 37 100.0 36 ..................................... AGTGTGGCTGCGAACACCTCATCTTCCGAGTGTTCC 72955 37 100.0 40 ..................................... TCCACGGCTACTGGTTTTGTAGTCATAGACGAAGGCGGTC 73032 37 100.0 41 ..................................... TACCCCGCCAAGGATATTTCACCGAAAGGAATCAAAAACCG 73110 37 100.0 37 ..................................... TTATTGGTGAAGGTCTTTATAGCTGCCAGCTCCCCGT 73184 37 100.0 36 ..................................... TCCGGATGCGACAGCGAGATCAGCAAGATTGTAAGC 73257 37 100.0 41 ..................................... GGTTTGTTAGGATCGCATGCTGTTGCTGGATAGCATGCGTG 73335 37 100.0 36 ..................................... TCCTGTTCAAATACACAAGTTTGCTGTTTGCGCGGG 73408 37 100.0 36 ..................................... TGGTCTACATGCTCGGCCTCGGGAAAGGGAAGACGC 73481 37 100.0 40 ..................................... CAGAAGTTTTACCACCGCCAGAGATCCCGATATTAATCTC 73558 37 100.0 38 ..................................... TTTTGACGCAGCAGCCAGAAAACGTGCGCTTCACGCTG 73633 37 100.0 39 ..................................... CTTGTCTAAAAACCTAGCTTCTTTAATGCGTACTCTTCA 73709 37 100.0 36 ..................................... TGTTGCGCGGGTCTTTGTACATTGAAATGATCAGCT 73782 37 100.0 38 ..................................... TGAGGGAAGGGGCGCGGCTCCTGGGGCTGGCCGATCAA 73857 37 94.6 38 .........G........G.................. TCATCGCCTGGATAACGCTTCATTTTTTCCAGGATCTC 73932 37 86.5 37 .......C..............CA....A.T...... TAAGGCTCTTGCATTTTTGTTCGTATTTGGTTATCTC C [73958] 74007 37 70.3 0 ....T...AC.A.T.......AAC..AA.....T... | ========== ====== ====== ====== ===================================== ========================================= ================== 19 37 97.4 38 GTTACATTGAAGACCCGAAAAGTTAGGGGACTGAAAC # Left flank : TAACAACTATGCCTAACCTTAGGTAGAAAGGCACTTCATTTCCGACTGACTGAAATATCTGAAGTGAACATTCCCCATATATATTTGGAAAAATGAAATACCGCCCCAGTGAAAATAGAAAACGAGAGCAGGTTGAAAAACGATTTGGTATTATGTTAGTTCTGAAAGTTTAAGCAGTAAATTGGATTGTTCCTCATGGGGAATTTGGATCGTTCGAGTGGCGATTGGAGCCATTTTATGCTAGTGGACGAAAAAGTCTTTTTGATATCAAAGAAAAAAGATAGATGAGGTATGGGGAATGTTTTATTATAAACATGAGAGCGAATGGGTACCCTTCAGCGGGGAAAAATAAAAGAATAAAATGCGTACAACCTGATTTTCGAGGATAGGGCGTGATTTTTGACAAGAAATGAATCCTCGAAAAAAGAATGGTTCCTTGTTGGCATTGAGTAGGAGGAAAGCCTTGGCGTGACTGGGGTTAAGTATGGTGATCAAAGTCG # Right flank : CTAAGCTGGCCTTGCCTGCTCGCGATGCTCCGACAACAAAAGATGCTAGAGAAAGTAGATTTGATGGAAAAGATGGAAAAACTTATAAAAGACGCGAAAAAAGCTGCACGAGAGACTTGCTGCACATAAACCGTTTTCAATATGGACGGTTGTGTGCAGTTTTTTTGTGGGGATTGTAACAAAATACAAGCTACATCGTCTTACTAATGAAGCCTTAAACATAAATGGAAAAAAATGTTGAAAATAGAAAAATTAAAGATTAATATGCAAAAAATTTCAAAATATTTTTAGCGAGGGGTATTGTTGAATAGAAAGCTTGTAGCAAGTTTTATTACTTCTTGCGTTGTTCTGGCGACAATCACTACTGCATTCGCAGCTACTCCGATGGGGATAGCACAATCAGAAGCGTCAATCAGTGGAAATCTGTCTACGGCAGGGGGAGAAAAACATTATGTAATATCTTCGTATGGTATTACGCGTGATATCTCCTCTAGAGTAAA # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAAGACCCGAAAAGTTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.10,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 269035-269526 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSUW010000002.1 Brevibacillus sp. HD1.4A 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 269035 32 100.0 34 ................................ TGATTTACTTTATAAACAATTGGTTTATAATATA 269101 32 100.0 35 ................................ ACGATGAAGCAAGCATGCTCTACACGCATCCGATC 269168 32 100.0 33 ................................ AAAACAAAGTAGATCGTGCGCAGACCAGCCCTC 269233 32 100.0 34 ................................ AAAAGATACTTGAGATTAGCAAAAATGAAGCATC 269299 32 100.0 33 ................................ AATTAACTCCGCCCAACTTGTAAATTTTGCATT 269364 32 100.0 34 ................................ TTAGGCTATGGAAAAGAGCGCAGTGTACCAAAAG 269430 32 100.0 33 ................................ TGTGAGCTGCGAGACTTTCTGCTGGAGTGCTGC 269495 30 84.4 0 .......................A.C..G.-- | TT [269519] Deletion [269525] ========== ====== ====== ====== ================================ =================================== ================== 8 32 98.0 34 GTCGCCTGTCGTAGGCAGGCGTGGATTGAAAC # Left flank : TTCTGGAAGTAGGAGTGATGTGGGATGATGGTGTTAATTACTTACGATGTGAATACAACCTCTGCTGATGGGCAAAGACGCTTGAGACAGGTTGCCAAAACATGCGAGGACTACGGTCAGCGAGTGCAAAATTCGGTGTTTGAATGTTTGATTGATTCGCAGCAGCTGAAGGAATTGCAGATTAAGCTGAAAAAGACTATAGATCCGGAGATGGACAGCTTGCGCTTCTATCGGATTGGGAGTAATTGGAAAGGTAAGGTTGAACATGTTGGCGCTAAACAAGGGTATGATCCAGAGGGGTTTTTGATGATTTAGCAGTGGATATGGCATTTGCGAACACTAGGCTCACATCGATTTTCAGGGAGGTTCGCAAATGCCTGCCGTTGCTGGGATTCGAGGTGTTTTTGGTATATGCTGCTGCGTATTATGCGACCGTATAAACGAGGTTCGCGGAAATCGCGTGAAATCCCTAGTCAGGACAAAGCTTCCTAGGTATTGCA # Right flank : AGAATTTGAGGACCTGTTTAGGGCAGTGACACCTGACTCTGGTGGAAGTCCGAACTGGTCAGATGTACTACCAAATACAGAGAAGTTAGCTCAGCTAGTAGACATAGGCCGGTAGTTTGATCTCAATAGTTCACCATTTAACTACGGAAACGGCAGTAATGCTGTTTTACATTTTGTTCATCGCCAATTTTTTGCTTGATCCTAGACTTTTCTGGAAAGTGTACCTGCTTTTTGGGATGGGAAGCTATGGTTGCTCTACATTAACACTCTACTGTATAGCAAAGATGGCTGCGATGCTACTAAGTAGCATATCAATAATGGTTTAGTCCTCGATGTATTGGCAGGAAAGAAGTAGAAGAGCAATTTTCGAATTCTAAATGTAAGATAGTTAATATACGCATTGATATGTATTTTTATTTCATCAACTAACAATCCCATTCTTATACGCCCTCCCAAGTGGGAAAAATCGAGATACCATCACATTATAGCTGCTTATGTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTGTCGTAGGCAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 48642-49672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSUW010000023.1 Brevibacillus sp. HD1.4A 23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 48642 36 86.1 37 .....G..TTT..............G.......... GCAGGTGCTTGGTCGTCTACATTTGACCTGCTCTACA 48715 36 77.8 22 ....................G...C.C.A..G.CGT TACGATTGATAGCAGTTTCGCG AC,T [48737,48740] Deletion [48773] 48776 36 100.0 37 .................................... GATATATGCAATGAACGTTAATGACGAATATTGACGA 48849 36 100.0 34 .................................... TGGTCGGTATTTTGAGCCACTAACCATCATGCCA 48919 36 100.0 39 .................................... TTGGGGTAAACATGCCGCTTTTGTCCGTTTCATAGTCTG 48994 36 100.0 36 .................................... GGATAAGTATACGGCTGAACCTGTGAGAGACAGGAC 49066 36 100.0 35 .................................... GTTTGGAGCTTGGATACGGCTTCACCTGCACCCAC 49137 36 100.0 38 .................................... TGATTTTGTCGAGGTTCAGGAATCCTCTCATGATCCTA 49211 36 100.0 34 .................................... TCAAGCAAGCGTGGATCGCGTTTTTCCAATTCCC 49281 36 100.0 35 .................................... CAAAATCTCGTCCTCATCCTATTTTGCTTACCCAA 49352 36 100.0 35 .................................... GAGGAATAAACTGTTGATGTAATCAGCAATATAGC 49423 36 100.0 35 .................................... GAAACGGGAGGCAGTCGGCTCATAAATTACGCCAA 49494 36 100.0 35 .................................... TTGAAATGAGCAAACGAGCATACAGTTTGCTACCC 49565 36 100.0 36 .................................... CACTGCCTGATGCCAGATTAACCAATTTAATACATA 49637 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 97.6 35 GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : GCCTTTACCGGACGAACAATCCATGGCGAGTTGGGTCTGCCAATGAACGAAAATGTAAAACGCGACATCGACCCGAAAGTAGGCTGGCTGCAAATTTCCAGCGAAGTCATTGGAAAATACGCCAGCGATTATATTTTCATGGCTGTCGATGCCAAAGCCGAGTCATTTGATTACGCGAATGATCCAATCTGGAACACCTTGGATGCCGTCAAACAAAACCATCTGTACGAAATTGACGGTTACCGCTTCTATTTCTCTGATCCGATTTCTGTGATGGGGCAACTAGAGGATATTGCCGATATGATGGAGGAGAGGGAAAGGGCTAGTGTTAAGCGGGGATAGTGTGGTTTTGCAGGTTTCGGAGTTTTGCCGTAGGCTTGAAGAACAGAAAGATGCCCCTAACGTTGAAGTAGGGGCATTGTTTGTTATGCGGGGATTGAATTTTTTACTGAGTTTTCGACAGGCAAAAACAAGTATAACGTCAATGGAACGGTGATATT # Right flank : CTCCTTCCTTGCCGAAACCTACAACAACAAGGCTTGAGCAGGGCTTTTTCGAGCGCCAGGAATTTCAGTATCCCTTTCCCCGTCTATGCACTCATTTCCAATGCACAATCGTTCAAAAAAGCTTACTCTCACAAGGATTTCGAGCATCTCCAGTGATTTTTGAGCTGCGGGGATGCTCGAAAATCAAACGCACATACTCAGTGGAACTTCGTGACTATTCGTGGTAGCCGCCCTGTAATGCAGGACGACAATGCACACGCACGAAATTAAAGCAAATCGACATACGGCCTCTAACCGTCGACTATCATCATTGTACTGTTTTCGCCTTGCCTCAACAACACACATCCACTTTCCTAGTAGATAAATTTAGTTAAGTCTCGCGGGAGGAACTCTCTTCCGACCGTGGCAATTCGCTTATCCAATTGGTCCTTGGTCACCGGGCCGATTTTTACAAACATGACCTGATCTTCTGCATGATGAATCAGCTCAGCCAGACTGAC # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATCCCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 55987-55468 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSUW010000023.1 Brevibacillus sp. HD1.4A 23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================= ================== 55986 36 100.0 41 .................................... CGAGGTGAGATAGGCATCCTCATCGACAACATCGCACAGAT 55909 36 100.0 33 .................................... GCTTCGCTGATGATATATTCGCGAAGCATCGGC 55840 36 100.0 35 .................................... CAGGAAATGGACCCGAGCGTGCAAGCCTCATTTGA 55769 36 100.0 34 .................................... TGGAAGCTGTCGGATTGCCGGCTGACGGATGCCC 55699 36 97.2 34 .....................T.............. TGGTCGAAGGTCGACGATCCGGCTAACAAACGAC 55629 36 88.9 89 ...........C...A.........A..A....... CACGGGGATGGATGAAGCCAGCACCAAACGGCCAGTCCATTCGAAAACTTTGAAACAAGCACGTGCATATCTAAATACATCTTGCGGCT 55504 36 69.4 0 C......TC.CC...A....A....AC.....T..G | C [55472] ========== ====== ====== ====== ==================================== ========================================================================================= ================== 7 36 93.6 44 GTTCGAAAGCTTAGTGGAAAGCTTCGAGGTTAGCAC # Left flank : TGTTTTATCAATGATTTTACTTAGTGCCATCTCAA # Right flank : AACAAAAGCCAATTCATCTAGAAACAGTGGAATTGGCTTTTTCCTATTACCCCAAAATATGAAAATGATTTACAATAAATAAAAATCATGCCCAACTCTTTTCAAAATCAAACCGGGAGGCACCAGCCATGGCAATCCGCAGTATAAAACTAAAGCTCAAAACCCGCACAGGCCCGGAAGCCCAAAACCTCCGAAAAGGAATATGGCGAACGCATCGGCTGTTAAATGAAGGCGTCGCTTATTATATGAAAATGCTCTTGCTCTTTCGTCAGGAGAGCACTGGCGGACAGACAAAAAAAGAACTGCAAGAAGAGCTGGTTCGTCATATTCGCGAACAGCAACAAAAAAATCGTGCAGATAAAAATACACAAGCGCTCCCATTGGACAAGGCGCTCGAAGCTCTGCGGCAACTATATGAACTGCTTGTTCCCTCCTCGATTGGGCAAAGTGGCGACGCCCAGATCATTAGCCGAAAATTCCTCAGCCCGCTAGTTGATCCG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGAAAGCTTAGTGGAAAGCTTCGAGGTTAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 22922-21126 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSUW010000031.1 Brevibacillus sp. HD1.4A 31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 22921 36 86.1 44 ......T..CAA.....C.................. TGCTCAACTGCTGTACATCCACTCACACGGCATTCGGCAGCAGA 22841 36 91.7 39 .......T.C.A........................ TTGTCAATATAGGATTCACCCAAATGAGATTACTACCCA 22766 36 100.0 36 .................................... GGTGTAGCTATATCGTACCACGAATTTTGTCAAAAA 22694 36 100.0 35 .................................... CTGCTCGGCGTTTTCAAGTTCGCGCTGCAATTCAG 22623 36 100.0 37 .................................... TTCGACGAAAAAGACGGCATGATCACGTTGACGAACG 22550 36 100.0 36 .................................... TATATCTTTGCATCTGGCTCGTTCGTCCATAGGCTC 22478 36 100.0 38 .................................... CCGTTGACTCGTCCGTTTTTAATTCCGGTGGTGACGCA 22404 36 100.0 35 .................................... GAGGACTGGCCGTGAACCCATACGCTCCTATTCCG 22333 36 100.0 37 .................................... TTACATCACGAAAAACGATGACCACTCTTCATACTTC 22260 36 100.0 36 .................................... CAATGTACGGATCGCCTATCGGATGAGCGATGACCT 22188 36 100.0 38 .................................... AACCGGATGGAGACGATTTCCTTACCAAGTACGGATTC 22114 36 100.0 36 .................................... AAACTCATCGATCACCTGCCCCCCATCTTCGCTAGA 22042 36 100.0 34 .................................... GGTAGACCAGGCCAACGCGCAGTTGGTGATTAAG 21972 36 100.0 36 .................................... GCGAGATACTCATATCAACTCACCGCTACTTTCTGC 21900 36 100.0 35 .................................... GACCTCCACACTTCATTGTATGTCCATCATACCCT 21829 36 100.0 38 .................................... CGCTGGCTGCTGTACCTCTCGTATTTATTGCCACGATC 21755 36 100.0 39 .................................... CCGTCAGGCGTTTTACTTTCCGCTCGTATAACTCTTCTG 21680 36 100.0 36 .................................... GAAATTTGCAGGGTTTAATGGGGTTATTTCATGTTA 21608 36 100.0 37 .................................... GCAACAAAAACGCGGTGGGACATGGAGCACCCAAAGG 21535 36 100.0 40 .................................... CGTGACTGATGTTCAACACTGCGTTTACGAACCTCATAGA 21459 36 100.0 41 .................................... GATCATCACCTACTTTTCGCCCTGTCCCCTACACGGGTAAA 21382 36 100.0 35 .................................... GACCACTTACGCAGCGCTGATGGCGATACTCCTAG 21311 36 100.0 41 .................................... GCCACTCCTTCGTAAATTCGCACGCTTTGGCAGATACCTCG 21234 36 100.0 37 .................................... CGAAAATAATGATTATGTGAACTGCTCAACTTGTCCA 21161 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 25 36 99.1 37 GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAAC # Left flank : AAGATCGTAGAAGATCCTGCAAGATAAAAATGGCTTTACCCGAAATCTCATAGTAAAATATGGGCAAGTACATTAGACACGGCTCTCAAGGGTGGTCGGCTCATCTCCCATGTCGGAAGCGAGGGGAGGTGGGAACGTGGCAATTACTCACGAAATGCTTACACTTATGCTCCAGTTCGGCGGCTTTATCGTTGGGCTGTTGAGTCTCGTTGTAACAATCGTTGTTGCCCTGACCAAAAGAAATGACCGCCCTTGAGATTGGCGTCCAAGGCGGTCATTCTGATCGACTATTAAGCTGAGCCGTCCCCTTGAGGGAACGTCTATTGTACTACCGGCAGAGTGCGGGAACACCCTGTCGGTTTTTATTTTGTCCACTTTTGGTTAAACATTAAACACTTCATGTTGAAAGTGTAACCGATCTTGCTTCCATCATAACACGTTTGACATGTCGGCGTAAATAAATAAGCGACCCCACATGTCTTTATAATCTCCTGGTTCAC # Right flank : TCCTGTCTTACCAATCCCTACAACCGCAAGCGTTCCCACACTCTCTTTCGAGCAGCCCATTTTCTCGGTTGTATTCTGCCTGATTTCACGGAGACTCCAGTCGTTCAAACTGACTTGGCGCTTACTCTCCCAACGTATGCGAGCATCCCCGGAGCTTTTTGGGCTGAGAGGATGCTCGCATCGTTGTTTTCGAAAGCTTAGTGGAAAGTCGAGATTATCCGTGGGAGTAGACTTGTGGAGGGTCTACATTTGCACACGCACGGAAATCGGCCTGTCGCCTTTAGCATGCGACCGATACATTCATTTTACATATTTTCCAAATACAGTTCAACTACTACCGCACTGGTAAACTCCTAGCATCAGCCATTTTCTCGCATCGGGGAAAAGCGCGGTCAAAATTTTGATCCCATCTTCCCTGCATCCTTCCGCCAAACCGCCGCATCCCCTTTTCCACTAAGAGGTATTGTACACCATTAGCGTGTCCTTACTTCGCCAAAGCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 24107-23847 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSUW010000031.1 Brevibacillus sp. HD1.4A 31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 24106 37 100.0 37 ..................................... ATGTGTTCTGTAATACTCTAGCTCTCTCGCTCTTCCA 24032 37 100.0 38 ..................................... AGCTACTCGCTTGCCCAGGATGGGACGATTTAGCAGAT 23957 37 100.0 37 ..................................... CTGGGAGGAACCATACGCTTTTGCCAATATCCTGAAC 23883 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 99.3 38 GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAACG # Left flank : | # Right flank : CCTGTCTTACCAATCCCTACAACCGCAAGCGTTCCCGCACTCTCTTTCGAGCAGCCAATTTTCTCAGTTGTATTCTGCCTGATTTCACGGAGACTCCAGTCGTCCAAACTGGCTTTGCGCCTACTCTCCCAACGTATGCGAGCATCCCCGGAGCTTTTTGGGCTGAGAGGATGCTCGCATCGTTGTTTTCGAAAGCTTAGTGGAAAGTCGAGATTATCCGTGGGAGTAGACTTGTGGAGGGTCTACATTTGCACACGCACGGAAATCGGCCTGTTGCCTTTAGCATGCGACCGATACGTTTATTTTATATATTTTCCAAATACAGATCAACTATGATGATGTCACGCCCCCCATATGAACCCCTGGAGTTTGTTAGAAAAATAATCGTCTGAAACAGATTGGATCGTGATTTTACAAGATCATGGAAGATCGTAGAAGATCCTGCAAGATAAAAATGGCTTTACCCGAAATCTCATAGTAAAATATGGGCAAGTACATTA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAACCTCGAAGCTTTCCACTAAGCTTTCGAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //