Array 1 219329-218079 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEPZ010000003.1 Salmonella sp. 32040203-2019-00004 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219328 29 100.0 32 ............................. TAACTTTTCACATCTCCCCTCATCACGCGCAA 219267 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 219206 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 219145 29 100.0 32 ............................. TAACCTGATTGCCCTGTGATTCCGCTTTCTGA 219084 29 100.0 32 ............................. TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 219023 29 100.0 32 ............................. CCTGGCAAATTATTTCCTGGATACTCGATATC 218962 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 218901 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 218840 29 96.6 32 .............T............... CCATTCACGCCATACGCCGCCGTCACATAGCG 218779 29 96.6 32 .............T............... AGCGCGATCGTTCCGTCGTTTCGTGCGACGAA 218718 29 96.6 32 .............T............... TCCCCGAGCTTAGTTAGGTTTCGCTGAACGTG 218657 29 96.6 32 .............T............... TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 218596 29 100.0 32 ............................. GCTTATCTGGAAAACCAATACGGATACGTAGG 218535 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 218474 29 96.6 32 .............T............... TCGGCAGCTACTTCAGTGTTAGGCGGCATCCA 218413 29 96.6 32 .............T............... CCACGGCGCAGGAAATCTCCTTTGTAACAGGG 218352 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 218291 29 100.0 32 ............................. GTGATCGAGTATTGCTCGTTGTCGGCGTGGGC 218230 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 218169 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 218108 29 96.6 0 A............................ | A [218081] ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236468-235586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEPZ010000003.1 Salmonella sp. 32040203-2019-00004 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 236467 29 100.0 32 ............................. GGAGAAAATAAAACGCCGCTTATCGCGTTCGC 236406 29 100.0 32 ............................. CGATCTCCTGACGCTCCGCGACCAGTTCAAGC 236345 29 100.0 32 ............................. ATAATTCCTGTAAATGACCAATTCAGAGATAT 236284 29 100.0 32 ............................. AGAGCTGATCGCCACGGCGTTTAAAACTGCGA 236223 29 100.0 32 ............................. TGATTGCCACACTCTGGACATTCAGCTTGATA 236162 29 100.0 32 ............................. GCCTACGATTTAACAGGCTGGACAATTACGAC 236101 29 100.0 32 ............................. TAACCAAAGGTTACTTTATTATCTCTCGCATA 236040 29 100.0 32 ............................. CGAGATTGGCCAACGGCTCGATTACGACTTTA 235979 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 235918 29 100.0 32 ............................. CCTGAGGAGATATTCACCTTCCTGCATTTCAT 235857 29 100.0 32 ............................. CCTGAGGAGATATTCACCTTCCTGCATTTCAT 235796 29 100.0 32 ............................. CGGGAGTACGGCAGCGCTGGCGGGCGTGATCG 235735 29 96.6 32 ............T................ ATTGGTGAGGGGATTATTGAGCGGCGGTCAAC 235674 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 235613 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCTGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //