Array 1 297931-297048 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWTY01000001.1 Pantoea sp. VH_8 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 297930 29 100.0 32 ............................. GCACATGTAAGCCCGCCGCGTGCGGGCTTTAA 297869 29 100.0 32 ............................. GTCTCGCAATGAGCAAATACACAGACTGTATA 297808 29 100.0 32 ............................. CTGACTCTTCATGGCTGGCTGATTCATGAAGC 297747 29 100.0 32 ............................. ACCTGTCTGATTTTGAGCGGGATATTAAGGGC 297686 29 100.0 32 ............................. AGTACTTCTTTCGCCCATCATTCACAGCGATG 297625 29 100.0 32 ............................. TTGGCGGCGACTGGATCGCAGATTGGGAGGCT 297564 29 100.0 32 ............................. TGCGCTGGTGCCTTTGACGCGATATCCGTCGG 297503 29 100.0 32 ............................. GCTTAACAGTCAGGCCGGTCAGGTACTGGCTG 297442 29 100.0 32 ............................. AACAATTCGAGAGGCTAGAGTGACGATACCCG 297381 29 100.0 32 ............................. GTTGAGCCCGTGTCCGGCTGACGCGGGATGCA 297320 29 100.0 32 ............................. GATTCAGCCTGCGCCTTGTCAGCGGAGAAGAA 297259 29 100.0 32 ............................. CGTGGCGCTACCCATGCCCGGGTAACGCCGGA 297198 29 100.0 32 ............................. GAGTATGTGGGCAGTGCCATTACGCTGACGCT 297137 29 100.0 32 ............................. GCGCAGAGCTAATAGAAATTGACACAGAACGA 297076 29 89.7 0 .......G.A..C................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : CAGAGCGATCCGTACGCCTTTATCCGTAACGCCTACTTCCAGCGGCACGACTTCCTGGCGCGTGGCGGTAAACTCAAGCCGGAAGATAATCCTAACGCAGCCGCGATTCAGGATGACCTGAAGGATATCGATTCGCAGTAATGTTACGGTCCTTAAAAGGGCGCGTCACATACGTCGTTTTGATTTTATTGCTGACGTCTTACCCGGTCTGCTGTAAGACCGGGTAAGAACAGAGTTCAGGTTCAGGCTCTTCCTGATCGCCCGATTCTCGTCGTTCATGCTATGGAAAACTTTTCTCTTCTGCTTTTACTTCTGACTTAATTCGTAACGACCTTTCCTGTTTGGGGCTGTTATTAACCTTCTGCCTTCCTGAATAACAGTATTTTTTCGACAGATTTGGTGTCTGAGAATAACGGCTCATAGGGGCAGATCCGGATGTAAAATTCGGTAGAATTTTCTGGTGCGAAAAAACGCTTTGTAATCAGTCGGATAATTTTAGA # Right flank : CCGCGATAAACCTGTAATGAAAGAGTCCGGGAAAGGTGAGGGTAAATCTTCGCTATGCGAGCGTTGATTAACCATGGTGAAGAAAGACGTCGAAGAGTGAGAATTTCTGGAACTCCCGTACCTGCCGGGAAAAAGTCGAGGTTGGTCAGCTGTCTGAAGGCGACTCATCAGAGTCGCCTTTTTTAAACCCGTCCCTCGATCAGAACTTGTAGTTAAAGCTCGCACCATAGAGCCAGGCCTTGCCTTCAGAGGTAAAGGTATAAGGACCTTCTTTCACCGTTACTTTCTGCCCATGCATATAAGAGATACCCAAATCGACTGAGGCATCATCGTTAAAGGCGTAAGACGTACCCGCACTCAGCCATAAACGATCCTGGTCCGGAATAGAGATAGAACGCTTATCAGCCGGTACCGGGCTGTCATCAAACGCAATACCGGTACGGAAAATCCAGTTTTTGTCGTAGGAATAGGTTGTGCCCAGTGCAATGCGGTAAGCATCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43429-44007 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWTY01000010.1 Pantoea sp. VH_8 Scaffold_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43429 29 100.0 32 ............................. CGCGCAGAACTGACGGCAGCTACACCAGAGGT 43490 29 100.0 32 ............................. CGCACTCCCCTATATCCCATGCCTACCGGGGA 43551 29 100.0 32 ............................. AGCGCATTGATCGCGAAATGGAGGCCATGATT 43612 29 96.6 33 ............................C GCTGGCACCAGCGGGTTTATCCGGCTCGTTGAG 43674 29 100.0 32 ............................. AGTTCATGCAGAAGGCATGGGAGCAGGAATCA 43735 29 100.0 32 ............................. CATTTGGGTGTGGACGTCAAAGATTGTCATAT 43796 29 100.0 32 ............................. CGAACCCGCCAGCCTAAAATTTCAGCACCAAC 43857 29 100.0 32 ............................. CCTATGCGTGGGCTTCCGAGATTGCGCTGGGC 43918 29 100.0 32 ............................. GCACCGACCATGAAACTCACCGAACCCTCGGC 43979 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGATCTGGACCTTATACCGGCCAGTGATTTCGATGAGAAACCGGTGAAGCTGAGCGCCTGATAGGGTGTTTCAGAGGAAAAGGGCGAGTGGAAACACTCGCCCTTTTTTGATCAAAGTCTGGCTGGTTTGCTGTGAAAGCGAGTTTTCAGACGGATCCCGGTCAAAGTGGAAGGATGTTAACGTCAGTTTCTGACCATTCGTGCCGCGCAATTACGCACCTCATCTCTGAAATGGGCTCGTAGCCGCGCCAGCGCTCCTGGCGTTTATTTCGGGCGGCGGGATGTTTTCCTCGTCCTCCCTTCGCAATAAGCTTATGCATTACTGCAAGGTTCTCTTTGATAGGGTGTTGCCAGTACCCTCCAGGCTCCCATTGCGGACGCTTTTTTGCGCCAGATTTTTACCGGAAAATAAATGTGCATTTGGCTTAAGTCCGCAGGTAAAATTCGGTGGAATTATCAGATGTGAAAAAATGCTTTGTAATCAGGCTGATAATTTTAGG # Right flank : GATCGTGCAGAGTCATTGAGAATTAATTGCCATGACTGTCACGTTACTTTTTGCGAAAAAACTGGGTTGTACGCGACCTGAAAGGCAATACACTGGGCACCAATCCCATGCTAAACGTACTGCTTAAAAGCATCATTTAAGCCAGATTAAACCGACCGAAGCGAATTGATAATTTAAGGCTATTGATTGATTTCAAATGTTTGCCGATATTAGGCTATACGCGCGATACGGATAAATAATATGGATATGACGGATAAAGCTGTATTAGAGCCGATTGGCCTACAGGTGAAAGATGCAGTTAAGGAGATTCTTTTCCAGCATCTCACAAAGGATAAGACCGCCGTTGCTAATCGCTCAGTTCTGTTTATGGCTGGCTCACCTGCCGCTGGCAAAACTGAATTCATAAACAATGTGTTATTCGAAGGAAAGCAAACCAACTTTGTCAGAATAGATGCCGATGATTTTCGCTGGTGGTTCCCTTATTACAATGAAAAAAATTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46178-47305 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWTY01000010.1 Pantoea sp. VH_8 Scaffold_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46178 29 86.2 32 A...........CC..............T CGTTCGAAGCGTTTGCTGCGCCCGGTTTAAAC 46239 29 100.0 32 ............................. GCCCGTCAACGCACTTCAAAAAAATAACCCCT 46300 29 100.0 32 ............................. GAATGCCTGTCAAATCAGCAGCCTGTTTTCTG 46361 29 100.0 32 ............................. CGCGATATGCCATTTGATGGTGTGGCTCACAA 46422 29 100.0 32 ............................. CGGTGAGCACACTAAACAGTGACGCAGAACCG 46483 29 100.0 32 ............................. GGATGGCAATACCTGGGCGCATTTCTCATCGA 46544 29 100.0 33 ............................. CGCATCCATCTGCGCACTGGCGGTGTTAATTGC 46606 29 100.0 32 ............................. CCGCCAGGGTGATGGCGGACAATCTGAGTGGC 46667 29 100.0 32 ............................. CTAACCGCTAAGAAGTGCAGAACACTCATAAC 46728 29 96.6 32 .................A........... GATGCCGTTCTGCGTGTTACTCCAAATGGAAA 46789 29 100.0 32 ............................. GCCCCGTTTGTTGTGTCCGGTTATTATGGCTA 46850 29 100.0 32 ............................. GGGCCCGGTTACGGCTGGGGTTAGGGTTTAAT 46911 29 100.0 32 ............................. TACCACGTCGAGCAGAACAAACAGGCAACCGC C [46920] 46973 29 100.0 32 ............................. GCGCTCACCAGCCACAGACGTGGGTCTTCTGA 47034 29 100.0 32 ............................. GGGCGATCAGTTCCTGATCCGCTCCGGGGCGA 47095 29 100.0 32 ............................. ATTTATTTTCGGAGTATCGGGTAACGGGGCAG 47156 29 100.0 32 ............................. GTATTTACTCGTATGAGCAATAAAAAATTGCA 47217 29 100.0 31 ............................. CTGTCTGCTTAGACTGCTTTGAGGTGCTATG 47277 29 72.4 0 T....T.....AC.........AT.G..A | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.6 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ATGCTGCGGCTCATGTGCCTCGACCTCTTATCGTAACGCGGCCTCGAAAAGCGGCTACCAAAAAGTACTAACATACGGCTCCTGCAGGGGCCGTTTTTAATGATGCCATCCGCACGCTCAAGCACGGAATATCGTTAGTCTGTTCATGGCATGCGTTAGTCTATTCATGGTAAGCAGGTTTTGTGACTGCCATAACGCACAAAATTCCAGCTAAAGCCGGCTACTTACCATGAATAGACGAACAATCGCCATGAATCACCTAACGAAAGGCTGCAGCTGCCAGTCTTTGCCTAACGTTCACCATGAATCACCTAACGTTATTCACCCGGCAGTAACTCAGGGCGGCGGGAATGGATCAGAAAGTAAACGCCGCCATCCTTTTTGACTTCCGAATATGTCAGATAGCCTATCTTCTCCAGGTTTTTCATCTCGTTGCGAACCGCTAAGTTTTGGGCGCTGATCCTGGAAGTCAGGTTAGACGCTCGAGCAGGCGCTCAAGG # Right flank : AGTCTTTATCAGCACGCTATGACTGAAGCCCGGCTCTCCCCATGCTGTGCGGCATCAGCCTGAAATCAGAACTGGTAAGTCACACCCATCGCCACAATGTCGTCGTTGTTAATCGACAGCGCGTTGTCATCATCCAGCTGGTTGATTTTGTAATCCACGAAGGCGGACATATTTTTGTTGAAGTAGTAGGTTGCACCCACATCGATATACTTCACCAGATCCGCATCGCCGATACCGTTTTCGATATCCTTGCCCTTAGTCTGTACGTAGCCGATTGACGGACGCAGGCCGAAATCAAACTGATACTGCGCCACCAGCTCGATGTTCTGCGCTTTGTTGGCTGCGCCCGCGACGGCAGCGCCGGTATTACGGTTGGTACCGCTGATTGGCGTCATGTTGCGGGTATCGGTGTAAATCGCCGCCAGGTAAACGCTGTTGGCATCGTACTTCACGCCTGCGCCCCAGGAATCTGCACGGTCACCGCCGCCATAGGCGCGCGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //