Array 1 2575-923 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJSM01000045.1 Thermoplasma sp. Kam2015 TKam2015_draft_contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 2574 29 100.0 39 ............................. AGTGGAAACACGGCAGAGGCAAAACCAGTAGCTTCTTCA 2506 29 100.0 36 ............................. TCCGATGACCCTGTGAATATGACGTCGCCTGAAACA 2441 29 100.0 37 ............................. GTGTAGCCACTGGACTACACTGGACTACATCCTCTGG 2375 29 100.0 38 ............................. GATATTGAGGCATCGGAAAATGCGTGTCGTGGTGATTG 2308 29 100.0 37 ............................. AATACTGTAGGAACAGTCAATGTAGCTAATGATATCA 2242 29 100.0 37 ............................. AAATCATGAGTGAAATAATAAATTTAGACGGCTCTAA 2176 29 100.0 38 ............................. GTGAAGTTCGCCATGACGCTCTGGAAGAAGGACATAAA 2109 29 100.0 36 ............................. ATTACTGTTTTGTCTATTGTTGCGATGACTCTACAG 2044 29 100.0 36 ............................. GATAATCGGCTGATAAATCCAGTAGCACACGATTTT 1979 29 100.0 37 ............................. TCTAAAAGTGGAAAAAGAGGGCGTTGGCGAGTATTTA 1913 29 100.0 36 ............................. TATATCGATGTAATCAGTCAATACATAATAACTTGA 1848 29 100.0 36 ............................. ATATATAAGCATTAGCGTATGAACAAACGTTTCTTT 1783 29 100.0 36 ............................. AGGGCAGATACAAAAGCATACAAAAGGGCATCTGTA 1718 29 100.0 39 ............................. GCCTTGAGTTCAGTATCCTCAGGAACTCGGGGATGGAGA 1650 29 100.0 36 ............................. ATGAAAGAACGTTTGAAGTCGCACTCGTGATAAGCT 1585 29 100.0 35 ............................. TTCAATAGTGGATGTCGGCAATCAAACAGGCACTA 1521 29 100.0 37 ............................. TGAATTGAAGCATAAGGAAAAACATAAGACTAAATTT 1455 29 100.0 37 ............................. ATTCCATCATGGCTTGAATCGATAGGATCGGATTATG 1389 29 100.0 38 ............................. TATTGTGATACGGACAGCATACACACTATAAACAGGAA 1322 29 100.0 40 ............................. GCATTGCAACTACTTCCGTATTTCTTATTCATCTGCCTTT 1253 29 100.0 38 ............................. AGAACCTCAGCACGTTCATTCATCAAAAGGAATTCAAG 1186 29 100.0 36 ............................. ATAGAATCTGAAACAAGCACACCAAGCGAGAGTTCT 1121 29 100.0 37 ............................. GGGTTTGAGATGTTTATATCTCCAGAAAGCACCTCTC 1055 29 100.0 30 ............................. TCTACCGGCAAGCACGAACGACGCAACATA 996 29 89.7 16 ........................AT..T TTGATCGCCTATGTAG Deletion [952] 951 28 69.0 0 ..G...A...GG.......TA...-T..T | T [948] ========== ====== ====== ====== ============================= ======================================== ================== 26 29 98.4 36 GTAAAATAGAACCTTAATAGGATTGAAAG # Left flank : TGGTGATCTATTCCTTATCTCTTCGTCTAGTTTGTACATTCTATCAGTTATGAAGAATAATGTTTATCTAAACCATCTTGTATAAAGATGTTCACCAGCTCTACCTAGGGCAAATGATATTCTTTTGAAGCTATATAGAATCACAATATCTCAATCATCTAATTCTCTTATGCCCATTTCAAAGATAGCGAGTCCTTCTCTAATGCATCCCTTCTTTAGAAAAATGAGCGGACATCAAGTAATTATTATGAAATATCGCCTACAATATTTTCGAAGCTTTTCTGATGCATATTCTTCTCTAGCATGAGACATTATAAGTTCCTTTATTTCTATGGATCTGCTCTATAAATCGGATATTATTGTTCTGAAATTACCGCCCCTTTTATATTTTCAGAGATGTATAGATCCTTTATATACTTACTATATGTTCATGAGTTCTGTACATTTTACTAATTCCGTACCAAAAAATAATATAGTATTAATGGGATCTATACTACCGG # Right flank : CAAAAATAATCGAATTTTTCCAAACCTCTCACCGAAGAACTTTTTCAGACCCTCATGGTCAAAGAATAAGATTTAACATAAAGGATTGCCCAAACCATACAGGAAGATTGAGGCGCCTGTTGATCCCCTGACAGGTAGATCAGATCGAGACATATAAGAATAAAATCAGGAACAATGCATCATACATCAATTGTAAAGACAGAAAGGAGAGAACATAGAAAACTAGGAGAGATGATGTCGATACAGAAAGATCTTCAGATGGAACATGCTCAGTAAAAAATCATGAGAAGTATTTCTGATACAAAGAATACATACTGGTCAATGAGATCATAATCATTGAAAAATTATCATTAGGATCAACAAATGTTCATGATCAACAGATCGATCTCTGCATTCCTGGCATTATATGCTACAGAGAAAGGCTATCTCGGTTAAGAATGTAAAGGCATAGGAGGGATCTCATTATATCCAGAATTCGATCAATGGTGAAACATCCCATG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAAATAGAACCTTAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 7733-8839 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJSM01000042.1 Thermoplasma sp. Kam2015 TKam2015_draft_contig_42, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 7733 28 100.0 38 ............................ AAAAAATGATTTTGAAGTATGAGGGTGGGATATTCTTT 7799 28 100.0 42 ............................ AAATCCCTTAATCCCTATATAAGGCATCGGTGGATGCGATAC 7869 28 100.0 41 ............................ AATATATGTGTAGATATATCAGATATGCCCATTGAAGACTT 7938 28 100.0 40 ............................ TACTTACAAGGTTTTTGCCACTCAATAATGATGATAATTT 8006 28 100.0 37 ............................ GTCTCAATCCGGCTCCTCCTTCCGAAGAGATCGAATA 8071 28 100.0 38 ............................ ATGACATTTCATACTGCCTATAATCTGCTGTTACGGTT 8137 28 100.0 40 ............................ CAGCCGGTCCTCACGGTAACAATGAGGGAGCTTGAAGAGT 8205 28 100.0 40 ............................ TACCAGAGAGAAAGGCTTAAAGATTACGAGGAAGTCTCTC 8273 28 100.0 42 ............................ TGATAAATATAGCCAATCATAGAATTAAAACAGAAACAGAAA 8343 28 100.0 38 ............................ CGGTGGCTGAGTTCATTGCTGTTTATCTAATATATCTA 8409 28 100.0 38 ............................ GAGATTTTTAAAGGATAGATAGATGCGATATTCTATCT 8475 28 100.0 39 ............................ AGACACAATAAGAACTTTGATAGGGACTTTGCCGTTATA 8542 28 100.0 37 ............................ CCAGACAGTGTTTGGTATTTCGCGTTCAGAGCGTTGT 8607 28 100.0 39 ............................ AATCTATGACTTTGAGGATATCATCCTGCTCATTTGCCA 8674 28 100.0 42 ............................ TTCAGGCGACAAAAAAATGCAGACAACGCAGCCGCACAAGTT 8744 28 100.0 40 ............................ TACTTACAAGGTTTTTGCCACTCAATAATGATGATAATTT 8812 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================== ================== 17 28 100.0 40 CTTCCATACTAACTAGTATTTCTGAAAC # Left flank : GTATTCGCCGATTATCGAGAGCGTCAACGCATAATCCGCACCTATGGCGAGACCAAGAAGGGCCCTGAATATTATAAGTTCAATGGCGTTTATCGATATTGCGCTCAATATGGCGAATAAGGCGAAGATGAGCATATCCCATTGGTATATGAGTTTACGTCCTTTGAGATCGGCTATGAAACCGAATACAGCACCGCCTATCAGCTGGCCGATTATTGTTGCAACACCGATTATGGCTGATTCCGCTACACCTATATGAAATAGCGGCCCTATGAACAGGAGAGCCGGACCTATCACAAGAAGATCGTAGCCATCCAGAAAATAACCCATATCGGAAAGCGCTGTTATCAGATAATGATATTTCTTGATGCTGAGGGCATCAAGTTTTTTAAGAAGATTATCCTGTGCCACACTATTCTAGACCAACGTATTATATCTTTTTTTCCATATAGAGATATATAGGGATAAATGCAACACCATTAATGCAACACATGTGAGGT # Right flank : CCCGTTGTCTATGATCTTATTTCTATACTGTATATAACGATTTCCAATATGTTTTATGTATTTATAGCATGAATAATTATATAATGTATATAAGATACAATATTAATATGGTATAATACGATATCTACCAACGAAAGAATTGAAAATTTCGGTAAGCCTCATTTTTTGACTTTGTTTAAATACCCTTACCGACATTTTCTTATATAAATAAATTATGTAGCGATAGTGACACAAATCCACGAACATACCATTGCTCAATGATCTACGGATTATGTAGTGCATCATATAACGTTTAGATCCCTTTTCTCCCCTATTATGAATCTATCAACATATCCCTTTGTCTTGAATTTATATAATATTACAGAATCGCCCTCTTCCAGCCGCTCATCTAAGCCTTCCATCATCTCGTTCAACAGCGCATCCGTTATTTCCCCCTCAAAAACACTGTTCTGCACCCATATCAGATACCTCTTCAGATATTTGTTGATCTTAGAAACCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCATACTAACTAGTATTTCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 20268-18302 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJSM01000042.1 Thermoplasma sp. Kam2015 TKam2015_draft_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 20267 28 100.0 40 ............................ ACAAGAGAGGAAGTAGTTGATTTCATCGAAAAGGAAGTTT 20199 28 100.0 41 ............................ ATTCTTACCCAATACAGAAAATACTTGATGGTATATAAACA 20130 28 100.0 37 ............................ TTTTTATACTCTTAATCGGGTTCGCTATTTCCACCCA 20065 28 100.0 37 ............................ TTTCGATAAATGGGATATATTCACCGCAATTGCTTCG 20000 28 100.0 40 ............................ GATGTCATGTCCCCAGTGTAAAAATGCTGTTTCTAATGCC 19932 28 100.0 37 ............................ TTTTTAAAAAAGCCATTAGTTTTTACTGCAGAGCCTA 19867 28 100.0 37 ............................ TGACCAAGCGCTCCGTCTGTTCCTGTGGCCACCTCGC 19802 28 100.0 41 ............................ GCGAAGATTTTCTTGGTAATACCGATCATCGGCTTCTAACA 19733 28 100.0 38 ............................ GTAAATTCACTGTCATCATATGTCTGCATTTCTGCAAA 19667 28 100.0 41 ............................ CTGTATGGCTTCCTTCACGTCAGCCGATACAGTAATCTGTA 19598 28 100.0 38 ............................ ATTCTATTCCAAAAATATATAAAGTCATTTTATTCCTC 19532 28 100.0 39 ............................ TCGTCCTTGTCATATATTTAGCGATGAAGGCTAATACGA 19465 28 100.0 41 ............................ GTCTCTCAAATAGATCAAATATACAGCTATAAATTCTGCCA 19396 28 100.0 40 ............................ CGTTCCGCCGATTGCGGCAATGAAAACATCGCCTTCGTTT 19328 28 100.0 38 ............................ ATACTTAATATTGAAGTCCCCGTTTCATGGAAAACTTC 19262 28 100.0 37 ............................ GTTGTATTCTCCTATCCTCACAACCATTTTTTCACCT 19197 28 100.0 38 ............................ TGATATCAGGGTCGGTACCTTCGCCATCCCGATCTCAT 19131 28 100.0 40 ............................ GGGTAGTAGCCCGTCGGAACCTGCGTTTTTCCTTCCACAT 19063 28 100.0 37 ............................ GTTGTATTCTCCTATCCTCACAACCATTTTTTCACCT 18998 28 100.0 42 ............................ TAGCAAAGATGCAGGTCTATTATGTATTATTGCGATATGCCA 18928 28 100.0 36 ............................ AAACCACGCGTTCAAATCCTGATCGAACAGATGATA 18864 28 100.0 40 ............................ GGGTAGTAGCCCGTCGGAACCTGCGTTTTTCCTTCCACAT 18796 28 100.0 38 ............................ ATTGTATACAAAATAGTCGCTGTCGCCCACGATGTGAA 18730 28 100.0 37 ............................ GTTTAAAACGCCATCCTTTCCCAACTTGCTGAGGCAG 18665 28 100.0 40 ............................ TTTGTTTGTCAGTGTGGCAATCTTTTGCACGGTTTCTTTA 18597 28 100.0 37 ............................ ACGGTTCGTCTCCCAATAGTTAGACGCATCGAACTCA 18532 28 100.0 41 ............................ AACCGTTATACGGTTGAAGGCATACACGCCATAATCCGTAA 18463 28 100.0 41 ............................ GCAACAATAGTTGGAATAAATGATGTTATAATCTTTATATT 18394 28 100.0 37 ............................ TTGAATAAGGACGGATTCCTTCTGACCTATCCTGTGT 18329 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ ========================================== ================== 30 28 99.9 39 GTTTCAGAAATACTAGTTAGTATGGAAG # Left flank : ACCATATTAATATTGTATCTTATATACATTATATAATTATTCATGCTATAAATACATAAAACATATTGGAAATCGTTATATACAGTATAGAAATAAGATTATAGACAACG # Right flank : TGGTCTTTTTTGATCATATGAATGACAATTTCAATGCTCGAGCCCTATTATCAATGGGATAAACGATATTTTTCTTCTGAAGTCGTATTTTCAAGGGGATAAATGGTATGGTAACAAGATAAATCCTTAGATACCATACCTTTCATCGCGGAAGCCGTATTTTCAATAGGCTATATTGGGGATATAAATTATTGATTGCATATAGCCTATTGGTAATGCGTGGTCTGGAGACGAAATTGCATCAATCGAGGGATATTGGGATATATCCCTAAATTACAATACTTTTTAATGCTGATGCCGTATTTCCAATAGGATATATGAGGGATATTGGAGGGATATATTTTTTAATATCCCTACTTTATATCCCTACTATACATGGGATTTTTCGATGGAAAACAGTCGATCATGACCAGAGAAGACTTAGCAGAAACTGCAAAGTCATGTCTGATGCCAGGGATATATTTTAGATATTTTCACACCGGTGTTTTTTAGCATATTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAATACTAGTTAGTATGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.40,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //