Array 1 3635-4090 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBDF01000042.1 Escherichia coli strain Sum2013_WWKa_NEU_53 Cont042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3635 29 100.0 32 ............................. GGCGAATACAAACGCTGGCGCAACGAGTCCTA 3696 29 100.0 32 ............................. ACGCCAGCGGTGGCGTTACTGAAATCCTCGGT 3757 29 100.0 32 ............................. CCGCCGGTTACTGCCCCGGCGTTCACTGCCGA 3818 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 3879 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 3940 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 4001 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 4062 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29804-31297 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBDF01000042.1 Escherichia coli strain Sum2013_WWKa_NEU_53 Cont042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29804 29 100.0 32 ............................. GGTTCAACCTGCATTCACCGACGGCCATAAGG 29865 29 100.0 32 ............................. TACGTGTCGCCGTTACAGGTTTCAGTCTGTTA 29926 29 100.0 32 ............................. CCGTTGAAAAAATAAATTCATGCCTGGAAATC 29987 29 100.0 32 ............................. TGGAATTTTTGCTCGGTCATGTCGAACCAGAA 30048 29 100.0 32 ............................. ACACACCGAGATCCTCAAACCTGGCTGGAGTT 30109 29 100.0 32 ............................. CACGCGAAAAAAGGAGAGGGCGGGAAAAAGGA 30170 29 100.0 32 ............................. ACGAAATATTTACATGATTTACATCGGGCATA 30231 29 100.0 32 ............................. ATTGCGCAGGGAATTATTTCTGATACCGGGGA 30292 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 30353 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 30414 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 30475 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 30536 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 30597 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 30658 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 30719 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 30780 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 30841 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 30902 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 30963 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 31024 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 31085 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 31147 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 31208 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 31269 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //