Array 1 54058-51712 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBZ01000051.1 Nocardia speluncae NBRC 108251, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54057 28 100.0 33 ............................ GCTTTGGCAGTGTCGAACGCGCTGCGGTACGCG 53996 28 100.0 33 ............................ TCCTGAGCAGTCGGAACCGACGAAGTAGCTTCG 53935 28 100.0 33 ............................ TCATGCACAGTGCCGAGGTCGAGCCGCCCGCTG 53874 28 100.0 33 ............................ CCCGCACTGGCCGCCGAGGCCAAAGTTTCGCGC 53813 28 100.0 33 ............................ TCAATCGGGTTATTGAACGGGTCTTTAACCCCT 53752 28 100.0 33 ............................ CAGCATCAGTAGGAACAGAACCACCAGCGCGGG 53691 28 100.0 33 ............................ TGAGGCCCGATCAACTCGGAGCGGTCACGCAGG 53630 28 100.0 33 ............................ GCCGAGGGTCGTCGCGGTCTTGCCGACGCCGCC 53569 28 100.0 33 ............................ TACGTCTGGGAGTATCGTCTGGTGCCGTGGTTG 53508 28 100.0 33 ............................ CCCGGACGCGATCAGCCACGCCCGCCTGGTGGA 53447 28 100.0 33 ............................ TCGCTGCTGATCAGCGAGTGCGCGGTCTCGGTG 53386 28 96.4 33 .........................C.. TGGTCTTCACGACAACTCGATTATTGATGTGTC 53325 28 100.0 33 ............................ TCCCTGTCGTACGGTTCGGTGTCTTCCCAGAAA 53264 28 100.0 33 ............................ CTGCTTTTCTACTGCGACCTTGTACGTAGCTAG 53203 28 100.0 33 ............................ GATCTGCGCGAGGACTTTGACGGGCTGGCGGCT 53142 28 100.0 33 ............................ GGTCATGACGCCGAGACCGAGTCCCCCACCGAG 53081 28 100.0 33 ............................ CGGTTCGAGCGGCTGTGGGCGTATTTCACCGGT 53020 28 100.0 33 ............................ CTCATAGTGGTGGGCAGGGACCCACATCGCGTC 52959 28 100.0 33 ............................ GGCGATGAGCCGGGCTTCGTCGTCGGTGACCAG 52898 28 100.0 33 ............................ TTCCGGGCTGGGAGCACGACTCCGCATGCCGCG 52837 28 100.0 33 ............................ TCGATCACGACGTCGTCGAAGATGCCGACCAGG 52776 28 100.0 33 ............................ GCACCAGCGGTCGAACAGGTTGGCCCGGGTCGC 52715 28 100.0 33 ............................ GTGAGGCAAACAACGCAAACACTGCATGACTCT 52654 28 100.0 33 ............................ GAACTACGCGAACAGATCTTGAAGGCTCGGTGG 52593 28 100.0 33 ............................ GCGTCTCGGGTCCGTTTCCTCTCAGGGGACCGT 52532 28 100.0 33 ............................ GACACCGTGGAAGCCGTCGAGGACCTTTACGAA 52471 28 100.0 33 ............................ GCAGACGATCCTCGACGCCGGACGTGAACTGGA 52410 28 100.0 33 ............................ GCGGCAGGTGGTCGCTGGCGGTCTGGGTCTCGG 52349 28 100.0 33 ............................ TCACATGGTCGGCGGCATTGGCGTTCATCTTGG 52288 28 100.0 33 ............................ TCGATCGCTGGTGTCGGCTCGGTCGCGAGCAAG 52227 28 100.0 33 ............................ TAGCGACTCACGCTTCTGTCGGCTTATCGTTTG 52166 28 100.0 33 ............................ TTTCCGGACTTGACGACGATCGCCCCTCGGTGG 52105 28 100.0 33 ............................ GAGTCGATATTGCCACCGATCGACTCCGGCGGT 52044 28 100.0 33 ............................ CCCACCGACGCTGCTGGGGCAACTGCTGACCAA 51983 28 100.0 33 ............................ CGACGAATACGCCGAGAAGTCGGTGCTGGGCGC 51922 28 100.0 33 ............................ TGCCGCTTGCCCCTCCACTGCGGCAACGAACGC 51861 28 100.0 33 ............................ GCACTGATAGATATTCTCGCCCTCGTCGGCTGA 51800 28 100.0 33 ............................ TCGACACCGGACCGGTGCTTTGGGTGCCAGGTT 51739 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.7 33 GTCGGCCCCGCACCCGCGGGGATGGTCC # Left flank : GTGCGATAACAACAGATTCGCCGTGCCACCGGCACGACCAGCAGACTTCCCCCACAACGCCCCCAACCAGGCCCTCTGCGGACCCGACAAGTCCTCCCACCCAGTCGATCTCGCATCCCCGTCAATCGTCATGGCGCCCACCATAAAAAGCCCCACCGACAGAAATAGCCCCGGAACCGCCCCGCTGAGCCACCAGAGCCGTCAGCTGCCGCACCAGCGAACCTACAAAGCCACAGAACTCCAGCCGGGAAACCACCGCCGAGTGCGAATCCCTGGCCTCATGGTCGAGGCGCCAGCAACCCGCCCGATAGCGTCACCCACTATCGAGCGCCTCTTTGTGAAGGTTGTCTCCCTTGAAGGCGTTGCGCGACACCGCTCACCCGATGGCCGGGAAACATGGCTGAGAGTAGCCTCGGCCACGTGTTCAGACACATAGATCCCGTCCAGGCGAAGTGAATGAAAATCCGCCACACTGCGCACATAAGACGAGGTCAGGAAGT # Right flank : GGAGACCAATGTTATGTCACCGTGTCGTGCTGGCAGGGGACACGTTCTTCGACGACTCTCCTACCTTTGTTGTCGCGACGTCGCGAGCAGTCGGTCTTAGGCCAGCATATCCCGACGAGAAGTCGGAGTAGGGGATCACCGCCCCCGGCAGAGCCTGCCAACTGCCAGCGCAGGATACGAAGTCTCAGTACCACGGCGAATCCGCCACCTCACCGCCACACATTCTGAGATTCCGTCTCAAGTTTCGAGGCCCTACACCGGCGGCTTACCGTTATGCAACGACGAGGCTGAATTCTTCCGCTTGGATTCCAGCGATGAATGCGGCCCATTCACCAGGGGTGAAGACCAGCGTCACACCGGTGTCGCGGCAACTCACGGTAATCCAGCCGTCGTTTCGACGGTCGATCGTAGGCATGCCCGCGGTGGCTTGCGTAGTCGGGTCGGTCGAGTGATCGCAGAATACCGTCCACAGATCGGCAGGGATCGAGATCTGCGGTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63871-64203 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBZ01000051.1 Nocardia speluncae NBRC 108251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63871 28 100.0 33 ............................ GTCGTATCGGCGACCATCGACACCTTCGACGTG 63932 28 100.0 33 ............................ CCGGTGGTCCGGCCGCGGATCCGGGGCAGGAGA 63993 28 100.0 33 ............................ ACCAGTTCCCGCAGCGCGGTTTCGGCGTCCCGG 64054 28 100.0 33 ............................ GTGTTCCGCGACCAGATGGGAGCCAACCAGGAG 64115 28 100.0 33 ............................ CTTCCGGATCACACCCTTCAGCCATTCCCAGGT 64176 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTCGGCCCCGCACCCGCGGGGATGGTCC # Left flank : GAAGCCGACCTCATTCAACCCGGCTTCGGCGAGCAACAGGTCACCATCATCGGCCCCGAACTCGAAACCCCGGCCGAATGGTGAGCCGATGACGGTCATCGTCCTTATCGCCGTCGCCCCGGGCCTGCGCGGCCACCTCACTCGATGGATGATCGAAGTGAACGCTGGCGTCTTCGTCGGCAAACCCAGCCGACGAGTACGAGAACGCCTCTGGGAACTCCTCGCCGACCGAGTCCGCGACGGGCAAGCCGTAATGATCGAACCCGCCAACAACGAACAAGGATGGGCCGTCCGCACTGCCGGCCGCGACCGCTGGAGACCCGTCGACTTCGACGGGCTACTCCTCTCAGCCCGCCCGAGAACACCAACCTCACCCACGCAGACCGACACCCCACAAGACTCACCCAGGCCGCGCAGCCGAGGCAACAGCACAGAGCAAAGCTTCGACCGAAGTGAATGAAAAAGTCACCACGGACGAATAAACATGCAGGTCAATAAGT # Right flank : GTGCTGCGTCGATCTCGGCGCCGCACTCCTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40-1104 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBZ01000047.1 Nocardia speluncae NBRC 108251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================================= ================== 40 29 93.1 32 ..A.........................G GGCTTTCTCCGGGCCAAGTCCGGGATCGGGGA 101 29 100.0 32 ............................. GCTGACCCCGGGCAGCCGATTCCTCCGATCGT 162 29 96.6 32 ..T.......................... CCTGACAACGCCAAGATCTGGCAGGACGCGCA 223 29 96.6 33 ..............T.............. CTGCCGGGCCAGGCGCATCTGCCCGCCTGGCCC 285 29 96.6 32 ............................A CTCGAGCGCACCGGGCTCGGCAGCGGCGGGCA 346 29 96.6 32 ............................G GAATTTGCCGATTCGGTCGATCTCCTCGGCGG 407 29 96.6 32 ..T.......................... CACAAACCGAACACCTGAGCGAGTGTTTTCAG 468 29 100.0 32 ............................. CCGTACCGGGTGATCGTGGATCCACGCCGCGA 529 29 96.6 32 ............................G TCGGTGATCCCGGCGTCCAGCAGCGACGACGC 590 29 100.0 33 ............................. GCGTGGAGGCTGAGGGTGTGGAATATCGCGCAT 652 28 86.2 31 ....C..A......-.............C TCCGGCTGCGATTTCCTGTTCGTGGACGAAG 712 29 86.2 32 ..G...........T....A........C TGGACTGCGCCCGGCAACCCGATCGCCGCGGC 773 29 86.2 32 ........T.....T...........T.A GCAGTCAGGCGTCGCTTTCGCTGACGAGGCGG 834 29 79.3 151 .....T.....C....T.........GAC CAACAGGACGCCGTCGGTCCGCAGACGGGGTGTCCCAGAGCGGTCGTTTCCGCGGCCGGTGGTCAGCATGTCGGCCCCGAATGCGGGGATGCTCCGGTATTGATGCCGGTGATTGTCAACGCCCGAGTGTCGGTTATATTCGTACCGGGCA A [858] 1015 29 82.8 32 .....T.....GT.G..........C... AGGCGGGAGAGTCGATCAAGCCTGCCATTATA 1076 29 79.3 0 T....................G.AA..TC | ========== ====== ====== ====== ============================= ======================================================================================================================================================= ================== 16 29 92.0 40 GTCGGCCCCGCACCCGCGGGGATGGTCCT # Left flank : TGGTCCGCGATGTGCAGCGACGTGGTGAGCGTGGTGTGGG # Right flank : CGCGCTCACGCACTATTTCGTTGACGTGTTCGACGCGCTAGACCTGCGAGCGCAAGTTGCGAGTACTAGCCGCACAGATCTGGCTGGCCCGGTGGACGTCCAGAAACTGCTCCCGTCTGTCGTCTAATTATCAGGTATTAGGCGTCCTGATTCAGGCAAATGCGATGGTCTCGCGGATGTTCGGCGGCATCGGCCCACAGCATGAGGCTGCGGCGGGGGAATGGCTGTGCGGATTCCAGGGCATCGATGGCGAGCGCCCATGGGTCCGTAACGGGCGTAGGGCACCGTATCGAACCTGCGCTGCGGCAGGTAGTTAGTATTTCGTCATGCCCAGCCTGCTCACACCCCAGTCCGAGAACTTCCCAGCGTGGTACCAGGATGTCGTCTCCAAAGCCGAACTAGCAGAGTCTGGGCCCGCGCGGGGGACGATGGTTATCAGGCCGACTGCTTACGCTGTCTGGGAGCGGATGCAGGCGGCTATGGATGGCCTGATCAAGGAC # Questionable array : NO Score: 4.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.73, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //