Array 1 4014-2887 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFS01000042.1 Lactobacillus helveticus strain IMAU60117 Scaffold42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4013 29 96.6 32 ............................C TGGAGACGGTAACTCGGTCATAGGTAGTAAAA 3952 29 100.0 32 ............................. AGCCCACTCGGTCGGTTGACCGTCAGCATCAA 3891 29 100.0 32 ............................. ATTAATGCGGTACTCACCATACCAAAATGAAA 3830 29 100.0 32 ............................. TATATGAGTCAGTTGAGTTCTGGGTCTTTAAA 3769 29 100.0 32 ............................. ATGCGATGCGTCAAGAATTGGAATGTGAGCTT 3708 29 96.6 32 ............................C AAACCATTTTAAATAAACGGACTAGTTTCTTT 3647 29 100.0 32 ............................. GATTGTCCCTAAATCGTTTGCTACAAATTGCT 3586 29 100.0 32 ............................. GATATATTAATAGTGTCAAAAAATAAAAAAAG 3525 29 100.0 32 ............................. ACGATCAGGATAATTCTTTTTATCTTTTGGAT 3464 29 100.0 32 ............................. ACGATCAGGATAATTCTTTTTATCTTTTGGAT 3403 29 100.0 32 ............................. TATTAATAGCAATCCTAATTACCATGTAAGAT 3342 29 100.0 32 ............................. GTATTTCAGGGTTATACCCTCAAACACATTAA 3281 29 100.0 31 ............................. CGTAATTCAAGAACTTCTTTACCCTCTTTGT 3221 29 96.6 32 ............................C ATGAAGCAGCTTTATGCAGAACGTGGCTCTTT 3160 29 96.6 32 ............................C ATGAAGCAGCTTTATGCAGAACGTGGCTCTTT 3099 29 100.0 32 ............................. TATTGAGCAACTTCGATAACGCGTTGCTTTTG 3038 29 100.0 32 ............................. CTTGGCTGGTCGGCTCATTCAATGTGGAATAG 2977 29 96.6 33 ............................C GATGTTTTTGCTACCGATGAACACAAGCCAATA 2915 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.7 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATATATATCTAAAAGTAAATGTGAAAGATTTTATCGACTAATTAAAACTGATTATGAAATTCCAACGCATATTTCTAAAATTACGCAATTAACATCAGAGAAATTGAATCAAAGTGGTGTTGAATTATTTGATGCGCTTGAAGACTTAAAGAAGTTTTTAGCTGATAGATTAATAGTAGGTTATAATTTAAATTTTGATATTAATTTCCTGAATCGTGACTATCAAAAATATAATAATTCCCATATCTTGAATAATTTAAAGGATATATTGCCAATAATTAAGAATAAAAATAAGTTTATTGATAATTATAAATTAAATACAGTTCTTAAAAATTATGGTATAAAAAATGCTGAACCTCATAATGCTTTGTCAGATGCGTGTGCCACATTGGATTTAATTATTAAGCTGGTAGAGCAAGGCGGCTTTTAAAGATGATGAAAGTGATTAAAAATAGAGATTTAGTATTTTGAAAACGGCGATAGAATGGGATTTATTTACT # Right flank : AACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTACTTCTAGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCGATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTGTCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCACCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCACG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2203-158 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFS01000101.1 Lactobacillus helveticus strain IMAU60117 Scaffold101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2202 29 96.6 32 ............................C GCAAAAAGGGTGTTTTGCACGGTAGCTCCTAG 2141 29 100.0 32 ............................. AAGTTTGGGCGTGAAATTAGCAAGCGATTTAA 2080 29 100.0 32 ............................. GATCTTGTTATTTTGTTTGTTTTCACAAAACA 2019 29 96.6 32 ............................C AACGCTGCTGAGTTAGTAACTACACAACAACT 1958 29 100.0 32 ............................. ACTGATACTGATTCTGCAGTTAAAGCAATTAA 1897 29 100.0 32 ............................. ATCAGTGCCTGAAGTTAGTAATTTTAGTTTCC 1836 29 100.0 32 ............................. GCTTCCAAAATTAATTAATTCCATTAATCTAG 1775 29 100.0 32 ............................. ATAAGAGCCCAACGGCTCAGGAGGTGAACAAG 1714 29 100.0 32 ............................. AAGCGAGGAGTATATCAAAATTGTTAATAATG 1653 29 100.0 32 ............................. AGCCCCTTTTTTATCACTCGCCGTTAGGCAGG 1592 29 100.0 32 ............................. TACACCCCAGAACAAGTAACCGCACAGAACCA 1531 29 100.0 32 ............................. ACTTACTAAAATCAATAAGCAAGATATAGCCC 1470 29 100.0 32 ............................. CTCCCCACTCGGCTTCGGGGTCTTCATCATCA 1409 29 100.0 32 ............................. CAAACAAGATGTTCCTGCTAGTGATGTAGTAC 1348 29 100.0 32 ............................. GTATAGGCGAAAATGGTTCAAAGCTGAAAAAG 1287 29 96.6 32 ............................C AAACTGTTTTATCTTTGATCCGACTTGAAAGA 1226 29 96.6 32 ............................C AAGTTCACACCACTTGAGAACCAACATTTGGT 1165 29 96.6 32 ............................C GATTTTTTCGATTCTGTTTTTAAATTAAAAAA 1104 29 100.0 32 ............................. TTAGTAATAGTTAGCAAGGGACGAGAAAAGTA 1043 29 100.0 33 ............................. ACGAAAAGGAAACAGACGGCTATATGCGTAGCA 981 29 96.6 33 ............................C CATTGACGCAATGATATTGAGTAAGTCCTTATG 919 29 100.0 32 ............................. CAGTGATGTTGATGAATAGCCTAGAAAAAGCA 858 29 100.0 32 ............................. GCTATATTAATAGTGTCAAAAAATAAAAAAGC 797 29 96.6 32 ............................C AAAAGACCCATCTGGTTGTTGCCCAGACAAGT 736 29 100.0 32 ............................. TGATAACGCTCATCGAAAGTTAAGGCAAGATG 675 29 96.6 32 ............................C TTGTACAAAACTTGTACAAACTGTTTGTTAGA 614 29 100.0 32 ............................. TGATAACGCTCATCGAAAGTTAAGGCAAGATG 553 29 96.6 32 ............................C TTGTACAAAACTTGTACAAACTGTTTGTTAGA 492 29 100.0 32 ............................. TGATAACGCTCATCGAAAGTTAAGGCAAGATG 431 29 96.6 32 ............................C TTGTACAAAACTTGTACAAACTGTTTGTTAGA 370 29 100.0 32 ............................. GAATCTAATTATTAGATAAAGATATAAGAGCC 309 29 96.6 33 ............................C ATTGACCTGCGATGGTCTTAATCCTTCCCAATA 247 29 100.0 32 ............................. ATCAGCCCGTTCAATAATAACTAGTTGGTAAC 186 29 89.7 0 .......................A...TA | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : AACAGCTTAACCAAAAGTGTTCAATTTATTATTGCAATTTGCGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAG # Right flank : AAAAGCTTTCAAGTGCTATAAATAGTTCATATATAATCATAAATTATTAGTTTAATTATTTAATAAGCAATCATTTGATATGATTGTTTATTTTTAAGTCTTGCTTTAATGATTTTATGAGTATATATGATATAATATTAGTGAAGGAGATGATCTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8864-10481 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCFS01000024.1 Lactobacillus helveticus strain IMAU60117 Scaffold24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8864 30 100.0 36 .............................. GAATGAGCGAATTTGAAGGTTTAAAAAAGGCAGTCT 8930 30 100.0 36 .............................. CGGATATTTCACCTAATCTAGCACCAGTGAAAATAG 8996 30 100.0 37 .............................. TCCAGATTGTTTGCAGAAGTTGGTAGTTTTATTGGAC 9063 30 100.0 36 .............................. TATTTTTAACGCTCATAAGTTTTATCCAGATACTCA 9129 30 100.0 34 .............................. TTCTAGCTCAGTAACAAAAGCTAAGGCAGAAGCC 9193 30 100.0 36 .............................. TGATTTATTAATATCAATAATATTATTTGTAAAATC 9259 30 100.0 36 .............................. CAATTCCTGATCATGCATTGTCTCACTTAATTCATC 9325 30 100.0 37 .............................. TCCTCCATTAGCTGTAAGTACCAATAATGTATTAAAC 9392 30 100.0 36 .............................. CATCTCCATTTTAAAACCGCTCTAGATACTATTCTA 9458 30 100.0 36 .............................. TGCTATAAAAAGCATCTCTTAATCGTGTTTTTGATT 9524 30 100.0 37 .............................. AGAGATCATTAATAAGACCGTTCTTGATGTCAGTTTA 9591 30 100.0 38 .............................. GAAAACGATGTTAAAAGTGTCAGCGTTGACGGAACAGT 9659 30 100.0 36 .............................. TAAGAGCAAGAAATCCAAGTCTCTTAAAATCACTAT 9725 30 100.0 37 .............................. AAGTCTATGTTTCCAAACTCAATTACTTTGATTAAGC 9792 30 100.0 35 .............................. AAAACATAAATATGCACTGAGTATGGCGGATTGCC 9857 30 100.0 37 .............................. AGCGATAAGCCGGGCAAGAATGCCGAAATTGCTATTG 9924 30 100.0 36 .............................. GTTTTTAAATTGTGGATGGCTACCAACCACATGCCA 9990 30 100.0 36 .............................. TGTGTTTGGCATCGGCTACCTTAGATTTTACCCAGC 10056 30 100.0 35 .............................. CAACTATGAAAGAGGATTATCATTTCCAGACTTAT 10121 30 100.0 36 .............................. AATTAAGCAACTCAGAAGTTTGCTATATCAGTGTAA 10187 30 100.0 35 .............................. CATGCAGTGGCTGGTGGCAATGGTACTTCGGAAGT 10252 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 10318 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 10386 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 10452 30 73.3 0 .A......C.......G...G..AA...TT | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 97.9 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGTCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACGATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATGAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //