Array 1 2706271-2707493 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008855.1 Bacillus sp. X1(2014) strain X1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2706271 32 100.0 33 ................................ ACGAAAATTGCGTGAGCAGGGTTTGTAGGGGAG 2706336 32 100.0 34 ................................ AATTACCGCTTTATGCTTTGATTCGTCCCAAATT 2706402 32 100.0 36 ................................ CCTTCTAGGGGGGTTCCCTTGGTTCCCCTTATTTGT 2706470 32 100.0 34 ................................ CCTCCTATTTGTTGATCGCTGATATATGGGCATT 2706536 32 100.0 34 ................................ TCTCTTGAATAACTCTGACCTTTTTTTCGTATTC 2706602 32 100.0 35 ................................ GTGCGGATATTGAAAAAATTGTCGAAAAATCTCTG 2706669 32 100.0 35 ................................ AAATTTCCCCCCATTAATAACATCCCATTGATCCA 2706736 32 100.0 35 ................................ ACAAATTCTTTTGCGATTTAATGGACGACCAACAG 2706803 32 100.0 34 ................................ CTCTTTTTAGAACCTATTCACCAGCTTACCCATG 2706869 32 100.0 33 ................................ CCCACATATCATCACCGTCCTATAAGTAATAAA 2706934 32 100.0 35 ................................ ACGCCGTCCGGCCATTCGACCTGCCGCAACGCTAC 2707001 32 100.0 33 ................................ TGCTCGCTTCTTACGTTCCTCGGCCTCTTCCCT 2707066 32 100.0 35 ................................ GCAACTGGTTGACTTGTCGGAACTCTAAAATTTTC 2707133 32 100.0 34 ................................ TTCTGAGCCACAGTGATAACATTGACCACCACTA 2707199 32 100.0 33 ................................ ATCAGTCTCGCCCGCCTGAGTGATTGCAAAAAT 2707264 32 100.0 34 ................................ ATACTTCATTGTTTGCGTTATTTTCGTCATTTAC 2707330 32 100.0 35 ................................ TCGACCGTCGGTTGCTCGATGAGTTTCCGCTTCGG 2707397 32 100.0 35 ................................ CTAATTCTTTCGCAATTTTAGCGTCACTCCAATTT 2707464 30 87.5 0 ........................--....TC | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 99.3 34 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : AGATGAGTACCCACCATTTCTTTGGAAGTAGGTGTATCATTTGTTAGTATTAATTACTTATGATGTTTCTACTGTAAGTAGTGGAGGGAAGAAACGTCTAAGGAAAGTAGCAAAGGAATGTCAAAATTATGGCCAAAGAGTTCAAAATTCCGTATTTGAATGTAATTTAGATGCCTCTCAATTTGCTGCATTAAAGTTTAAACTTGCTGATATTATCGACAAAAATCAGGATAGTCTCAGATTCTATCAGTTAGGGAAGAATTATAAAACAAAAGTTGAACATATTGGCATTAAAGAATCAATTGATTTAGATAGTCCAATAATATTCTAGTGCGAATGTATAGTGCACATAAATTTCTTATTACTTTCGCACCTGAAATTCTTGTTCTTTTTTGTTGGAATTTGTCGTTTTTTTCATTATGTTCTTTATTTAATTAAAGAAAATAGTGTCTTTTTAATCAAAAATATGCTAATTTATATTTTTTTGATTAAAAATCGCT # Right flank : CGGCTACACTTAACTGGACAATAAAAATAAGGTCAAGTAGACTAACCACCAAATTTGGGCATACTGCTTACTGTCATAAGAGATCCATTCTAGAAACTTTACGTGGAGAAGCGGGTATGCTAGCCTTGTCGGCGGGGCCAGGTGTACTTATCAGCTGGCTTCCTGGTCGGGAAAGCATGTCCGCAGAGGCTCCATGTCAAGTTTCGGCATTATTCCACTGTTGTTGCAGTCTACGTTACCCCTATTTAGTTAAGGAGAGACTTACATGAGAGAAAGAAGAACATTTACTTCCGAATTTAAAGCTCAAATGGTCAAGTTATACGAAAGCGGAAAGCCCAGAAAAGATATCATTAGTGAATACGATTTAACGCCTTCGGCATTGGACAAATGGATTAAACAAAGCAAAACATCTGGTTCGTTTAAAGAGAAGGATAATAGGACACCAGAACAAACAGAGTTGATCAAACTTCGTAAAGAAAACCAACGTTTATTGATGGAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2708940-2711303 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008855.1 Bacillus sp. X1(2014) strain X1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2708940 32 100.0 34 ................................ ATTATGCACCTTAAATATACAAACCCAGACGCAC 2709006 32 100.0 35 ................................ ACCTCCTTTCATTGTTTCTTTCTGTAAAACTTCCA 2709073 32 100.0 34 ................................ CTGCAAATGGTGCCGACCAATCAGACGGAAAACT 2709139 32 100.0 34 ................................ ACTGTCTAGGATAGCTTTTAGAGACTCATCCCAT 2709205 32 100.0 35 ................................ ATCAATCCCTTTCTTATTTAAAATTTTTTATTTCC 2709272 32 100.0 35 ................................ ATCAATCCCTTTCTTATTTAAAATTTTTTATTTCC 2709339 32 100.0 34 ................................ AACACCCGCTGGATTCCTTCAAACATTTCACGCA 2709405 32 100.0 34 ................................ TTCGTCGCTCATAAACCATGCTTTAACGCTACAA 2709471 32 100.0 34 ................................ TTACGTACAACTTCGATTACAAACGTTTCATCAC 2709537 32 100.0 34 ................................ CGCTGTCTTGCGCTCGCAAAGTTCTTGCATCTTA 2709603 32 100.0 33 ................................ ATTAGGGAAACATTCTTTTACGATACTAGTTTC 2709668 32 100.0 36 ................................ ATCGAAAATGATCGAGTAGTTACTGATTCCCTAACA 2709736 32 100.0 36 ................................ TATATCTTATATCCAAACATCATACACTAAAACACC 2709804 32 100.0 35 ................................ ACCGTTTTGAATCGAATCATACGCCAGGTTTCCGA 2709871 32 100.0 34 ................................ AAAAGCATTACTTTAACCGGGGAAGAATTCGGTC 2709937 32 100.0 34 ................................ TTTTCGGTTTAATAGGGAAATTAGCAATTACCCA 2710003 32 100.0 34 ................................ ATATTGGCTTTATTTGGGCTTTTAGCCGTTGGGG 2710069 32 100.0 34 ................................ TTTCGTATAGACGAGCGTGTATTTGGTAGCTGAC 2710135 32 100.0 36 ................................ AAAAAGCCGGATATCAATGGAGAGTTGGTGGCGAAT 2710203 32 100.0 35 ................................ ATATGCGTCACCCCTTCGCTACATTTTGGAATATG 2710270 32 100.0 33 ................................ GTTTCATCAATCCCGCACTGAATAACATTTAGC 2710335 32 100.0 35 ................................ GGAAAAAACAAAGGAAAGACACTTAAAGAAATCTA 2710402 32 100.0 35 ................................ CATACCTGCATTAACCATTAAACCAGTAGCTGCAG 2710469 32 100.0 35 ................................ TTCTAAAATGCTGCTCATTCTTGGTCCATCTACTC 2710536 32 100.0 35 ................................ ATAAATTGGAAAAGTTTTTTTATAGTAAAACCAAC 2710603 32 100.0 34 ................................ AAAAGCAGCAATTTTGGCTCGATCATCCCTTAAC 2710669 32 100.0 35 ................................ TGTTGCATTCCCATGCGAACACGTTCAGCAAGGTT 2710736 32 100.0 35 ................................ ACTAAGAAAGGGATTGATAACATGAACACACTAGA 2710803 32 100.0 35 ................................ ATGACGTTTTCGGATAAACATCTTTTCTGTTTCCG 2710870 32 100.0 37 ................................ CGTACCAATCCCAATGGGTATTACCCTTATTGTCCAC 2710939 32 100.0 35 ................................ CACGATCCTGCAACTCCACCCCTTTTTGAAATCCA 2711006 32 100.0 35 ................................ ACCAATAACTAAGAAAGTAGTACAATGACATCATT 2711073 32 100.0 34 ................................ TTAGATTACGTAGAAGAACAAGAACGTCACAGAC 2711139 32 100.0 35 ................................ TCTTATGTGCTTGTTTTTAACTTTCTTCAACCCTT 2711206 32 100.0 34 ................................ TTATTAAAAGGGTTAAAAAACATAAACGCAAAAC 2711272 32 71.9 0 T..A......C..CCT..T..C.A........ | ========== ====== ====== ====== ================================ ===================================== ================== 36 32 99.2 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : ATGGCATTACATATGTTTATTTGTTGATCTTTATAATCGTGAAATTATTGGTCACAGTGCTGGGCCTCATAAAAACGCAGGCCTAGTATATCAAGCCTTATCGACTATAAAAGCTGATTTACGGCAAATTCAATTGTTTCACACGGACCGAGGAAATGAGTTTAAAAACAGGATGATTGATGAAGCATTAGAAACATTTAAAATAAAGCGTTCATTGAGTATGAAAGGTTGTCCGTATGATAATGCGGTAGCTGAAGCCACCTTTAAAATTATTAAGACAGAGTTTGTCAAAGGGAAACATTTTGAAAATTTAGAACGGTTGAAATTAGAATTAGATGATTATGTTCATTGGTTTAATCATATCAGAATTCACGGAACACTTGGGTATTTAAGCCCTATTGAATATAAAAATGAACACCTTAAAAAAGTTGTCTAGTTTAGTGTTGACATACCATGGATTGAAATAAGTGTCCGAGAGTATCCATAGCAAGGATATTCTC # Right flank : TGGGGACTGAATGAAGTAATATCAATAAATAGTTAAGGGATATAGAAGACTAATCAGGGGGGATTATAACAAGTTATGTCCAAAATTATTGTAATCGGAGCAGGGATACTCGGTGCATCTACCGCTTATCATTTGGCAAAAATGGGTGCCGAGGTAACAATAGTAGATCGTCAAGACCGTGGACAGGCAACGGAAGCTGCGGCAGGAATTGTTTGCCCATGGCTTTCCCAACGTCGTAACAAAGCATGGTATCAATTAGTGAAAGCTGGAGCGCGTTATTATCCAAAATTAATTGCAGATTTAATAGCAGATGGGGAAAAAGACACTGGATACAGGCAAGTTGGAGCAATAAATTTACATACAGATATCGATAAACTGGAGCAAATGGCAGAGCGGGCAAGAAAACGCCGGGAGGATGCACCGGAAATAGGGGAAATACATATTTTGTCACCTGACGAAACAAAGAAGCTTTTTCCGCCTTTATCCAATGAGTATGGGGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //